Manes.S113300.1.v6.1 (mRNA)

Overview
NameManes.S113300.1
Unique NameManes.S113300.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length558
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold10295supercontigScaffold10295:228..785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32366975
Longest1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.S113300Manes.S113300.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.S113300.1Manes.S113300.1.v6.1-proteinManihot esculentapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.S113300.1.v6.1.CDS.1Manes.S113300.1.v6.1.CDS.1Manihot esculentaCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.S113300.1.v6.1 ID=Manes.S113300.1.v6.1|Name=Manes.S113300.1|organism=Manihot esculenta|type=mRNA|length=558bp
ATGTCTGAAATGCTGAGAAACCCAAGGGTAATGAAGGAGGCACAAGCAGA
GGTAAGACTAGCGTTCGATGGAAAAGCTGATGTGGACGAAAAACGCATTC
AAGAATTAAAGTACCTGAAACTAGTAATCAAAGAAACCTTAAGGCTGCAT
CCTCCAGTACCCCTGCTGCTTCCAAGAGAATGCAGCGAGACTTGCGAGAT
TAATGGCTACAAGATACCTGCCAAGACTAGAGTGTTTGTGAATGCATGGG
CACTTGGAAGAGATCCAAGTTACTGGAGTGAAGCTGAGACGTTTTTTCCG
GAGAGATTTCTTGATATTTCAGTTGATTTTAAGGGAACCAATTTTGAATA
TATCCCATTTGGAGCTGGAAGGAGAATCTGTCCAGGTATTTCATTTGCCC
AGCCTAGCATTGAGCTGCCACTTGCTCATTTGTTGTATCATTTTGATTGG
AAACTTGGTAATGGGCTGAAACATGAAGATCTAGACATGACGGAGACCTT
TGGCTTAACAGCTAGAAAGAAACAAAATCTTGTCTTAATTCCTATTCCTT
ACAAGTAA
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mRNA from alignment at Scaffold10295:228..785+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.S113300.1.v6.1 ID=Manes.S113300.1.v6.1|Name=Manes.S113300.1|organism=Manihot esculenta|type=mRNA|length=558bp|location=Sequence derived from alignment at Scaffold10295:228..785+ (Manihot esculenta)
ATGTCTGAAATGCTGAGAAACCCAAGGGTAATGAAGGAGGCACAAGCAGA GGTAAGACTAGCGTTCGATGGAAAAGCTGATGTGGACGAAAAACGCATTC AAGAATTAAAGTACCTGAAACTAGTAATCAAAGAAACCTTAAGGCTGCAT CCTCCAGTACCCCTGCTGCTTCCAAGAGAATGCAGCGAGACTTGCGAGAT TAATGGCTACAAGATACCTGCCAAGACTAGAGTGTTTGTGAATGCATGGG CACTTGGAAGAGATCCAAGTTACTGGAGTGAAGCTGAGACGTTTTTTCCG GAGAGATTTCTTGATATTTCAGTTGATTTTAAGGGAACCAATTTTGAATA TATCCCATTTGGAGCTGGAAGGAGAATCTGTCCAGGTATTTCATTTGCCC AGCCTAGCATTGAGCTGCCACTTGCTCATTTGTTGTATCATTTTGATTGG AAACTTGGTAATGGGCTGAAACATGAAGATCTAGACATGACGGAGACCTT TGGCTTAACAGCTAGAAAGAAACAAAATCTTGTCTTAATTCCTATTCCTT ACAAGTAA
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Coding sequence (CDS) from alignment at Scaffold10295:228..785+

>Manes.S113300.1.v6.1 ID=Manes.S113300.1.v6.1|Name=Manes.S113300.1|organism=Manihot esculenta|type=CDS|length=558bp|location=Sequence derived from alignment at Scaffold10295:228..785+ (Manihot esculenta)
ATGTCTGAAATGCTGAGAAACCCAAGGGTAATGAAGGAGGCACAAGCAGA
GGTAAGACTAGCGTTCGATGGAAAAGCTGATGTGGACGAAAAACGCATTC
AAGAATTAAAGTACCTGAAACTAGTAATCAAAGAAACCTTAAGGCTGCAT
CCTCCAGTACCCCTGCTGCTTCCAAGAGAATGCAGCGAGACTTGCGAGAT
TAATGGCTACAAGATACCTGCCAAGACTAGAGTGTTTGTGAATGCATGGG
CACTTGGAAGAGATCCAAGTTACTGGAGTGAAGCTGAGACGTTTTTTCCG
GAGAGATTTCTTGATATTTCAGTTGATTTTAAGGGAACCAATTTTGAATA
TATCCCATTTGGAGCTGGAAGGAGAATCTGTCCAGGTATTTCATTTGCCC
AGCCTAGCATTGAGCTGCCACTTGCTCATTTGTTGTATCATTTTGATTGG
AAACTTGGTAATGGGCTGAAACATGAAGATCTAGACATGACGGAGACCTT
TGGCTTAACAGCTAGAAAGAAACAAAATCTTGTCTTAATTCCTATTCCTT
ACAAGTAA
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