Manes.01G020700.3.v6.1 (mRNA)

Overview
NameManes.01G020700.3
Unique NameManes.01G020700.3.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length1891
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:3502226..3504116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32357607
Longest0
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G020700Manes.01G020700.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G020700.3Manes.01G020700.3.v6.1-proteinManihot esculentapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G020700.3.v6.1.five_prime_UTR.1Manes.01G020700.3.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G020700.3.v6.1.CDS.1Manes.01G020700.3.v6.1.CDS.1Manihot esculentaCDS
Manes.01G020700.3.v6.1.CDS.2Manes.01G020700.3.v6.1.CDS.2Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G020700.3.v6.1.three_prime_UTR.1Manes.01G020700.3.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G020700.3.v6.1 ID=Manes.01G020700.3.v6.1|Name=Manes.01G020700.3|organism=Manihot esculenta|type=mRNA|length=1891bp
TCTCTCTCTCTCTCTCTCTTCATCTCACCCACAAAAACTTGGTACTAATA
AGTACTAAATTTCAGCAGCAGCAACAACAACAACACATGTCCAAATCCTC
AAACATATACATACTCACAGTGTTTTTGCTGATCTTGATGATGAGGTTTG
GGTCTCAGGAACAAATGGCTGTCTTTCTCACTAACTGGTTTCTTTTGTTT
TTCCCCTCTTTTCATTTTCTTTGCAGATCAAGAGAATAGATTGGAGAAAT
TGAAAAAAGAAAAGGGATTTTAGTGCACCTCAAGCTAAGCTGATTTAGCT
AATAATATCACATGATCTGTTGCCTGTTGGTGCATTTTTATGCATATCTG
TCGTTCTCAAGCTCCACTTTACAGATAAAACTAGGTTTTCTTATCTATTG
TTCAGTGCAAATTTTACTAAAGCTATCTCTCAATTTTTCTTTAACATGTT
TCCTTCAAGCAACAATGGCAATGACCCCATCTGCTACAGTGACCAACAGC
AAGTTTACAATAGGCCTTTTTTCAATGACATCACTTCAAATTCTAAACAT
GAAGAGCTTCCATTTTCTTGCTTCCACTTTCCATCTCCTTTTCTTCCTTA
TGATCAACTGGACTTTCAAGATCATGATGTTGATCTTCTCCATCAAAACC
ATGATCTTTTTCTTCACCATCCACCCTTAATCAGAGCTCTTGCTTCCACC
AGTTGTACTGTAGCATCATCAGCTGAGACATTTCTTGACATGGTGCGTTC
CAACCAAAATGATGCTAATAAGAAATCTTGTAGTGCTTCTTCTGATCAGA
TCCCAAGAAAGAGATCTTGCAAGAGAGATCGCCATAGCAAGATTTACACA
GCTCAAGGACCTAGAGACCGTAGAATGAGATTGTCTCTTAAAGTTGCTAG
AGAATTCTTTGATCTGCAGGACAAGCTTTGTTTTGATAAAGCTAGCAAAA
CTGTTGAGTGGCTGCTCATGCAAGCAAAACCAGCAATCAAGAAACTATCA
AGTGGTCTCCCACAGTTCAACTACAGCTGCAGTGTTCATGCGAAGAGTGC
ATCTTCTACTTCAGAATGTGAAGTTGTATCTCGAAACGATGATGAGGCAG
CCGCCATTAAAGCCACCAGCAAGGTCTCTAATGCTAAAAACTCATCATCT
TCATGCGTTACCAACAAGGGGAAAAAAGCAAAACCATCACGTAAAATTGC
ATTCGACCCAGTAGCAAGAGAATCAAGGGACAAAGCAAGAGCAAGAGCAA
GAGAAAGAACAAGAGAAAAGCTTCAGAATAGAAGAATTGACGAATCAAAG
CTAAGTGAAGAAGCCAAAGATCTTGAATTTAACCAATTAAATTGCTGGAG
TCCATTTGAAATAGGTGAAGAATCTGGCAAACAAAGTCACCCCATGAATC
CTAATTCCTTGGAGATTCCGACACAAGAGCAAGACAGATTATTAGTAACC
TCGGAGAACATGATTGATGATTCAATGGTGATCATGGAAAAGTGGAGCGC
ATGTTGTTCTTCCATTAACAACCACCTGTACAACGCTGCCATGCCCCAAG
AGGTGAGTTCCAAGAAAGAAGTAGCTATAGTTGTCTTCCAGATGATTTTG
TACATAAACATTTTTACATAAATCAAGGAATTAAATGTTATTTTTTTACA
CAATCAATTTGGTTGCAGCATCAAATCACAGACTTGCAATCTTTCTTCAA
GTCATTGGAGGCGCCATATATATAACAGTTAGATGATGATATGTCAAGTC
AAGTGGACAAATGATTTGAAGAATACTATGTATGGTTTTTCTTTCTGTTT
AGAATTAATGTAAAATAGAGGTGTGTATCTTTCTTTCTTTCTGCAATTCT
ATTGTGAAACTCTTTTTTCAATGATTAAATTGTTCATCAGC
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mRNA from alignment at Chromosome01:3502226..3504116+

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G020700.3.v6.1 ID=Manes.01G020700.3.v6.1|Name=Manes.01G020700.3|organism=Manihot esculenta|type=mRNA|length=1891bp|location=Sequence derived from alignment at Chromosome01:3502226..3504116+ (Manihot esculenta)
TCTCTCTCTCTCTCTCTCTTCATCTCACCCACAAAAACTTGGTACTAATA AGTACTAAATTTCAGCAGCAGCAACAACAACAACACATGTCCAAATCCTC AAACATATACATACTCACAGTGTTTTTGCTGATCTTGATGATGAGGTTTG GGTCTCAGGAACAAATGGCTGTCTTTCTCACTAACTGGTTTCTTTTGTTT TTCCCCTCTTTTCATTTTCTTTGCAGATCAAGAGAATAGATTGGAGAAAT TGAAAAAAGAAAAGGGATTTTAGTGCACCTCAAGCTAAGCTGATTTAGCT AATAATATCACATGATCTGTTGCCTGTTGGTGCATTTTTATGCATATCTG TCGTTCTCAAGCTCCACTTTACAGATAAAACTAGGTTTTCTTATCTATTG TTCAGTGCAAATTTTACTAAAGCTATCTCTCAATTTTTCTTTAACATGTT TCCTTCAAGCAACAATGGCAATGACCCCATCTGCTACAGTGACCAACAGC AAGTTTACAATAGGCCTTTTTTCAATGACATCACTTCAAATTCTAAACAT GAAGAGCTTCCATTTTCTTGCTTCCACTTTCCATCTCCTTTTCTTCCTTA TGATCAACTGGACTTTCAAGATCATGATGTTGATCTTCTCCATCAAAACC ATGATCTTTTTCTTCACCATCCACCCTTAATCAGAGCTCTTGCTTCCACC AGTTGTACTGTAGCATCATCAGCTGAGACATTTCTTGACATGGTGCGTTC CAACCAAAATGATGCTAATAAGAAATCTTGTAGTGCTTCTTCTGATCAGA TCCCAAGAAAGAGATCTTGCAAGAGAGATCGCCATAGCAAGATTTACACA GCTCAAGGACCTAGAGACCGTAGAATGAGATTGTCTCTTAAAGTTGCTAG AGAATTCTTTGATCTGCAGGACAAGCTTTGTTTTGATAAAGCTAGCAAAA CTGTTGAGTGGCTGCTCATGCAAGCAAAACCAGCAATCAAGAAACTATCA AGTGGTCTCCCACAGTTCAACTACAGCTGCAGTGTTCATGCGAAGAGTGC ATCTTCTACTTCAGAATGTGAAGTTGTATCTCGAAACGATGATGAGGCAG CCGCCATTAAAGCCACCAGCAAGGTCTCTAATGCTAAAAACTCATCATCT TCATGCGTTACCAACAAGGGGAAAAAAGCAAAACCATCACGTAAAATTGC ATTCGACCCAGTAGCAAGAGAATCAAGGGACAAAGCAAGAGCAAGAGCAA GAGAAAGAACAAGAGAAAAGCTTCAGAATAGAAGAATTGACGAATCAAAG CTAAGTGAAGAAGCCAAAGATCTTGAATTTAACCAATTAAATTGCTGGAG TCCATTTGAAATAGGTGAAGAATCTGGCAAACAAAGTCACCCCATGAATC CTAATTCCTTGGAGATTCCGACACAAGAGCAAGACAGATTATTAGTAACC TCGGAGAACATGATTGATGATTCAATGGTGATCATGGAAAAGTGGAGCGC ATGTTGTTCTTCCATTAACAACCACCTGTACAACGCTGCCATGCCCCAAG AGGTGAGTTCCAAGAAAGAAGTAGCTATAGTTGTCTTCCAGATGATTTTG TACATAAACATTTTTACATAAATCAAGGAATTAAATGTTATTTTTTTACA CAATCAATTTGGTTGCAGCATCAAATCACAGACTTGCAATCTTTCTTCAA GTCATTGGAGGCGCCATATATATAACAGTTAGATGATGATATGTCAAGTC AAGTGGACAAATGATTTGAAGAATACTATGTATGGTTTTTCTTTCTGTTT AGAATTAATGTAAAATAGAGGTGTGTATCTTTCTTTCTTTCTGCAATTCT ATTGTGAAACTCTTTTTTCAATGATTAAATTGTTCATCAGC
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Coding sequence (CDS) from alignment at Chromosome01:3502226..3504116+

>Manes.01G020700.3.v6.1 ID=Manes.01G020700.3.v6.1|Name=Manes.01G020700.3|organism=Manihot esculenta|type=CDS|length=1164bp|location=Sequence derived from alignment at Chromosome01:3502226..3504116+ (Manihot esculenta)
ATGTTTCCTTCAAGCAACAATGGCAATGACCCCATCTGCTACAGTGACCA
ACAGCAAGTTTACAATAGGCCTTTTTTCAATGACATCACTTCAAATTCTA
AACATGAAGAGCTTCCATTTTCTTGCTTCCACTTTCCATCTCCTTTTCTT
CCTTATGATCAACTGGACTTTCAAGATCATGATGTTGATCTTCTCCATCA
AAACCATGATCTTTTTCTTCACCATCCACCCTTAATCAGAGCTCTTGCTT
CCACCAGTTGTACTGTAGCATCATCAGCTGAGACATTTCTTGACATGGTG
CGTTCCAACCAAAATGATGCTAATAAGAAATCTTGTAGTGCTTCTTCTGA
TCAGATCCCAAGAAAGAGATCTTGCAAGAGAGATCGCCATAGCAAGATTT
ACACAGCTCAAGGACCTAGAGACCGTAGAATGAGATTGTCTCTTAAAGTT
GCTAGAGAATTCTTTGATCTGCAGGACAAGCTTTGTTTTGATAAAGCTAG
CAAAACTGTTGAGTGGCTGCTCATGCAAGCAAAACCAGCAATCAAGAAAC
TATCAAGTGGTCTCCCACAGTTCAACTACAGCTGCAGTGTTCATGCGAAG
AGTGCATCTTCTACTTCAGAATGTGAAGTTGTATCTCGAAACGATGATGA
GGCAGCCGCCATTAAAGCCACCAGCAAGGTCTCTAATGCTAAAAACTCAT
CATCTTCATGCGTTACCAACAAGGGGAAAAAAGCAAAACCATCACGTAAA
ATTGCATTCGACCCAGTAGCAAGAGAATCAAGGGACAAAGCAAGAGCAAG
AGCAAGAGAAAGAACAAGAGAAAAGCTTCAGAATAGAAGAATTGACGAAT
CAAAGCTAAGTGAAGAAGCCAAAGATCTTGAATTTAACCAATTAAATTGC
TGGAGTCCATTTGAAATAGGTGAAGAATCTGGCAAACAAAGTCACCCCAT
GAATCCTAATTCCTTGGAGATTCCGACACAAGAGCAAGACAGATTATTAG
TAACCTCGGAGAACATGATTGATGATTCAATGGTGATCATGGAAAAGTGG
AGCGCATGTTGTTCTTCCATTAACAACCACCTGTACAACGCTGCCATGCC
CCAAGAGCATCAAATCACAGACTTGCAATCTTTCTTCAAGTCATTGGAGG
CGCCATATATATAA
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