Manes.01G020700.2.v6.1 (mRNA)

Overview
NameManes.01G020700.2
Unique NameManes.01G020700.2.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length2082
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:3502035..3504116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32357606
Longest0
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G020700Manes.01G020700.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G020700.2Manes.01G020700.2.v6.1-proteinManihot esculentapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G020700.2.v6.1.five_prime_UTR.1Manes.01G020700.2.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR
Manes.01G020700.2.v6.1.five_prime_UTR.2Manes.01G020700.2.v6.1.five_prime_UTR.2Manihot esculentafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G020700.2.v6.1.CDS.1Manes.01G020700.2.v6.1.CDS.1Manihot esculentaCDS
Manes.01G020700.2.v6.1.CDS.2Manes.01G020700.2.v6.1.CDS.2Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G020700.2.v6.1.three_prime_UTR.1Manes.01G020700.2.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G020700.2.v6.1 ID=Manes.01G020700.2.v6.1|Name=Manes.01G020700.2|organism=Manihot esculenta|type=mRNA|length=2082bp
CTGTCTCCAATAAATTCCCCTTCCTTGTGTGCCTTAAGCTCCCACCATCA
TTATTCAAACAAATCCCTTTCTCTTTCTCTTTCTCTCTGTCTTTGCAGCA
CCCCATGGAAATTTGGTACTTGTTCTGTGCTGTCTTTCTCAAGCTCTAGC
CCTTTAGCTTTGAGCAAAAGCAAGGTAAAAATGGAACTCTCTCTCTCTCT
CTCTCTCTCTTCATCTCACCCACAAAAACTTGGTACTAATAAGTACTAAA
TTTCAGCAGCAGCAACAACAACAACACATGTCCAAATCCTCAAACATATA
CATACTCACAGTGTTTTTGCTGATCTTGATGATGAGGTTTGGGTCTCAGG
AACAAATGGCTGTCTTTCTCACTAACTGGTTTCTTTTGTTTTTCCCCTCT
TTTCATTTTCTTTGCAGATCAAGAGAATAGATTGGAGAAATTGAAAAAAG
AAAAGGGATTTTAGTGCACCTCAAGCTAAGCTGATTTAGCTAATAATATC
ACATGATCTGTTGCCTGTTGGTGCATTTTTATGCATATCTGTCGTTCTCA
AGCTCCACTTTACAGATAAAACTAGGTTTTCTTATCTATTGTTCAGTGCA
AATTTTACTAAAGCTATCTCTCAATTTTTCTTTAACATGTTTCCTTCAAG
CAACAATGGCAATGACCCCATCTGCTACAGTGACCAACAGCAAGTTTACA
ATAGGCCTTTTTTCAATGACATCACTTCAAATTCTAAACATGAAGAGCTT
CCATTTTCTTGCTTCCACTTTCCATCTCCTTTTCTTCCTTATGATCAACT
GGACTTTCAAGATCATGATGTTGATCTTCTCCATCAAAACCATGATCTTT
TTCTTCACCATCCACCCTTAATCAGAGCTCTTGCTTCCACCAGTTGTACT
GTAGCATCATCAGCTGAGACATTTCTTGACATGGTGCGTTCCAACCAAAA
TGATGCTAATAAGAAATCTTGTAGTGCTTCTTCTGATCAGATCCCAAGAA
AGAGATCTTGCAAGAGAGATCGCCATAGCAAGATTTACACAGCTCAAGGA
CCTAGAGACCGTAGAATGAGATTGTCTCTTAAAGTTGCTAGAGAATTCTT
TGATCTGCAGGACAAGCTTTGTTTTGATAAAGCTAGCAAAACTGTTGAGT
GGCTGCTCATGCAAGCAAAACCAGCAATCAAGAAACTATCAAGTGGTCTC
CCACAGTTCAACTACAGCTGCAGTGTTCATGCGAAGAGTGCATCTTCTAC
TTCAGAATGTGAAGTTGTATCTCGAAACGATGATGAGGCAGCCGCCATTA
AAGCCACCAGCAAGGTCTCTAATGCTAAAAACTCATCATCTTCATGCGTT
ACCAACAAGGGGAAAAAAGCAAAACCATCACGTAAAATTGCATTCGACCC
AGTAGCAAGAGAATCAAGGGACAAAGCAAGAGCAAGAGCAAGAGAAAGAA
CAAGAGAAAAGCTTCAGAATAGAAGAATTGACGAATCAAAGCTAAGTGAA
GAAGCCAAAGATCTTGAATTTAACCAATTAAATTGCTGGAGTCCATTTGA
AATAGGTGAAGAATCTGGCAAACAAAGTCACCCCATGAATCCTAATTCCT
TGGAGATTCCGACACAAGAGCAAGACAGATTATTAGTAACCTCGGAGAAC
ATGATTGATGATTCAATGGTGATCATGGAAAAGTGGAGCGCATGTTGTTC
TTCCATTAACAACCACCTGTACAACGCTGCCATGCCCCAAGAGGTGAGTT
CCAAGAAAGAAGTAGCTATAGTTGTCTTCCAGATGATTTTGTACATAAAC
ATTTTTACATAAATCAAGGAATTAAATGTTATTTTTTTACACAATCAATT
TGGTTGCAGCATCAAATCACAGACTTGCAATCTTTCTTCAAGTCATTGGA
GGCGCCATATATATAACAGTTAGATGATGATATGTCAAGTCAAGTGGACA
AATGATTTGAAGAATACTATGTATGGTTTTTCTTTCTGTTTAGAATTAAT
GTAAAATAGAGGTGTGTATCTTTCTTTCTTTCTGCAATTCTATTGTGAAA
CTCTTTTTTCAATGATTAAATTGTTCATCAGC
back to top

mRNA from alignment at Chromosome01:3502035..3504116+

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G020700.2.v6.1 ID=Manes.01G020700.2.v6.1|Name=Manes.01G020700.2|organism=Manihot esculenta|type=mRNA|length=2082bp|location=Sequence derived from alignment at Chromosome01:3502035..3504116+ (Manihot esculenta)
CTGTCTCCAATAAATTCCCCTTCCTTGTGTGCCTTAAGCTCCCACCATCA TTATTCAAACAAATCCCTTTCTCTTTCTCTTTCTCTCTGTCTTTGCAGCA CCCCATGGAAATTTGGTACTTGTTCTGTGCTGTCTTTCTCAAGCTCTAGC CCTTTAGCTTTGAGCAAAAGCAAGGTAAAAATGGAACTCTCTCTCTCTCT CTCTCTCTCTTCATCTCACCCACAAAAACTTGGTACTAATAAGTACTAAA TTTCAGCAGCAGCAACAACAACAACACATGTCCAAATCCTCAAACATATA CATACTCACAGTGTTTTTGCTGATCTTGATGATGAGGTTTGGGTCTCAGG AACAAATGGCTGTCTTTCTCACTAACTGGTTTCTTTTGTTTTTCCCCTCT TTTCATTTTCTTTGCAGATCAAGAGAATAGATTGGAGAAATTGAAAAAAG AAAAGGGATTTTAGTGCACCTCAAGCTAAGCTGATTTAGCTAATAATATC ACATGATCTGTTGCCTGTTGGTGCATTTTTATGCATATCTGTCGTTCTCA AGCTCCACTTTACAGATAAAACTAGGTTTTCTTATCTATTGTTCAGTGCA AATTTTACTAAAGCTATCTCTCAATTTTTCTTTAACATGTTTCCTTCAAG CAACAATGGCAATGACCCCATCTGCTACAGTGACCAACAGCAAGTTTACA ATAGGCCTTTTTTCAATGACATCACTTCAAATTCTAAACATGAAGAGCTT CCATTTTCTTGCTTCCACTTTCCATCTCCTTTTCTTCCTTATGATCAACT GGACTTTCAAGATCATGATGTTGATCTTCTCCATCAAAACCATGATCTTT TTCTTCACCATCCACCCTTAATCAGAGCTCTTGCTTCCACCAGTTGTACT GTAGCATCATCAGCTGAGACATTTCTTGACATGGTGCGTTCCAACCAAAA TGATGCTAATAAGAAATCTTGTAGTGCTTCTTCTGATCAGATCCCAAGAA AGAGATCTTGCAAGAGAGATCGCCATAGCAAGATTTACACAGCTCAAGGA CCTAGAGACCGTAGAATGAGATTGTCTCTTAAAGTTGCTAGAGAATTCTT TGATCTGCAGGACAAGCTTTGTTTTGATAAAGCTAGCAAAACTGTTGAGT GGCTGCTCATGCAAGCAAAACCAGCAATCAAGAAACTATCAAGTGGTCTC CCACAGTTCAACTACAGCTGCAGTGTTCATGCGAAGAGTGCATCTTCTAC TTCAGAATGTGAAGTTGTATCTCGAAACGATGATGAGGCAGCCGCCATTA AAGCCACCAGCAAGGTCTCTAATGCTAAAAACTCATCATCTTCATGCGTT ACCAACAAGGGGAAAAAAGCAAAACCATCACGTAAAATTGCATTCGACCC AGTAGCAAGAGAATCAAGGGACAAAGCAAGAGCAAGAGCAAGAGAAAGAA CAAGAGAAAAGCTTCAGAATAGAAGAATTGACGAATCAAAGCTAAGTGAA GAAGCCAAAGATCTTGAATTTAACCAATTAAATTGCTGGAGTCCATTTGA AATAGGTGAAGAATCTGGCAAACAAAGTCACCCCATGAATCCTAATTCCT TGGAGATTCCGACACAAGAGCAAGACAGATTATTAGTAACCTCGGAGAAC ATGATTGATGATTCAATGGTGATCATGGAAAAGTGGAGCGCATGTTGTTC TTCCATTAACAACCACCTGTACAACGCTGCCATGCCCCAAGAGGTGAGTT CCAAGAAAGAAGTAGCTATAGTTGTCTTCCAGATGATTTTGTACATAAAC ATTTTTACATAAATCAAGGAATTAAATGTTATTTTTTTACACAATCAATT TGGTTGCAGCATCAAATCACAGACTTGCAATCTTTCTTCAAGTCATTGGA GGCGCCATATATATAACAGTTAGATGATGATATGTCAAGTCAAGTGGACA AATGATTTGAAGAATACTATGTATGGTTTTTCTTTCTGTTTAGAATTAAT GTAAAATAGAGGTGTGTATCTTTCTTTCTTTCTGCAATTCTATTGTGAAA CTCTTTTTTCAATGATTAAATTGTTCATCAGC
back to top

Coding sequence (CDS) from alignment at Chromosome01:3502035..3504116+

>Manes.01G020700.2.v6.1 ID=Manes.01G020700.2.v6.1|Name=Manes.01G020700.2|organism=Manihot esculenta|type=CDS|length=1164bp|location=Sequence derived from alignment at Chromosome01:3502035..3504116+ (Manihot esculenta)
ATGTTTCCTTCAAGCAACAATGGCAATGACCCCATCTGCTACAGTGACCA
ACAGCAAGTTTACAATAGGCCTTTTTTCAATGACATCACTTCAAATTCTA
AACATGAAGAGCTTCCATTTTCTTGCTTCCACTTTCCATCTCCTTTTCTT
CCTTATGATCAACTGGACTTTCAAGATCATGATGTTGATCTTCTCCATCA
AAACCATGATCTTTTTCTTCACCATCCACCCTTAATCAGAGCTCTTGCTT
CCACCAGTTGTACTGTAGCATCATCAGCTGAGACATTTCTTGACATGGTG
CGTTCCAACCAAAATGATGCTAATAAGAAATCTTGTAGTGCTTCTTCTGA
TCAGATCCCAAGAAAGAGATCTTGCAAGAGAGATCGCCATAGCAAGATTT
ACACAGCTCAAGGACCTAGAGACCGTAGAATGAGATTGTCTCTTAAAGTT
GCTAGAGAATTCTTTGATCTGCAGGACAAGCTTTGTTTTGATAAAGCTAG
CAAAACTGTTGAGTGGCTGCTCATGCAAGCAAAACCAGCAATCAAGAAAC
TATCAAGTGGTCTCCCACAGTTCAACTACAGCTGCAGTGTTCATGCGAAG
AGTGCATCTTCTACTTCAGAATGTGAAGTTGTATCTCGAAACGATGATGA
GGCAGCCGCCATTAAAGCCACCAGCAAGGTCTCTAATGCTAAAAACTCAT
CATCTTCATGCGTTACCAACAAGGGGAAAAAAGCAAAACCATCACGTAAA
ATTGCATTCGACCCAGTAGCAAGAGAATCAAGGGACAAAGCAAGAGCAAG
AGCAAGAGAAAGAACAAGAGAAAAGCTTCAGAATAGAAGAATTGACGAAT
CAAAGCTAAGTGAAGAAGCCAAAGATCTTGAATTTAACCAATTAAATTGC
TGGAGTCCATTTGAAATAGGTGAAGAATCTGGCAAACAAAGTCACCCCAT
GAATCCTAATTCCTTGGAGATTCCGACACAAGAGCAAGACAGATTATTAG
TAACCTCGGAGAACATGATTGATGATTCAATGGTGATCATGGAAAAGTGG
AGCGCATGTTGTTCTTCCATTAACAACCACCTGTACAACGCTGCCATGCC
CCAAGAGCATCAAATCACAGACTTGCAATCTTTCTTCAAGTCATTGGAGG
CGCCATATATATAA
back to top