Manes.01G015700.1.v6.1 (mRNA)

Overview
NameManes.01G015700.1
Unique NameManes.01G015700.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length3512
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:2581911..2585422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32359438
Longest1
AncestorIdentifiercassava4.1_015036m.v4.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G015700Manes.01G015700.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G015700.1Manes.01G015700.1.v6.1-proteinManihot esculentapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G015700.1.v6.1.CDS.2Manes.01G015700.1.v6.1.CDS.2Manihot esculentaCDS
Manes.01G015700.1.v6.1.CDS.1Manes.01G015700.1.v6.1.CDS.1Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G015700.1.v6.1.three_prime_UTR.1Manes.01G015700.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G015700.1.v6.1.five_prime_UTR.1Manes.01G015700.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G015700.1.v6.1 ID=Manes.01G015700.1.v6.1|Name=Manes.01G015700.1|organism=Manihot esculenta|type=mRNA|length=3512bp
TACTTTATGAAAATATGTCATTTTACAATACATTTACAAATATAGCCTAA
TTCTTGCCTACGCTGAATCTGCATTAACCCATAATATAAATAAATAGGAT
TTCATGTGAACCCCACTAGCAGTTTAGACTAACACACACAGAAGATCTCC
TAATCAGAGTTTAAGCAGACGTTAATACTACAATATGTTTGTTCAGAGAA
CTTACAGCAACTGAGTCGGTAAATTTGATCCTCGATGGCGCTTAGGAAGA
TCAAACAGCTGATTCTACATCATCAGTTTTCATTTCTTCTCTGTATAACT
TAGTGTGCAGATGCCGGGTAAAGCTAGTAGTCGTGTCTAAGAAATAAAGA
ATAAATGACATCGTGCAGCAGCACACAAACATGGGTATTGGCCCGAAGAT
CCATAGAAACAGAGGGAACGACAGATAGAAAGCGCGTAAACCAAGGGACC
AGAAGAAACTTCCTCTATTCAAGTTTCTGGCAACATACTCAATGGAATCC
TTTTTGCCTACTGATGTAGGTACAGTAGCCAAGAAACTAACATGAGCATA
GTATCTAATTGACTGCACATTGCAAAGAAAGGCGACAAGGAAGCATAGCA
GAATAGAGAAGTACTTAATTGAGGAAACAATGGAGTTCTTATTTCCATAT
ACTAGTTGTGAGGCTGTGTTCCCGGAGTTTGATGTGCTGCTTACAAACAC
ACTGATCAATGAGCTGAGAGTGATTGCTGTTGTTGCTAAAAGTGTAGATG
CCATTATGTTGTTACGTATTGTTTGAACCGCCAAAACTCCATTCTTCAGG
GGATCCTGAAATTTACAGTCAATATTGTCAAATTGGAAGTTTTATCTGTA
ACAAATTCTAAAACAAAATTTCAGGTAAAAAGAAAAAAAAGTAGTGTATG
ACGAACTATAAACCACTACTTGCTCAAACAACAAGTAACCAAGCCTTACA
TATGGATTATGGGCTAATCTCCTCGCTATGCATCAACTCTAGTCTGTGTC
ATGCATACAAAGTTGATACAATCATTGGTTTTGCATACATGCCAAGCATG
TATTTCAATTGAAAAGAAAGGAGAGCTTGAGCACTTCAAAAACTATGGTT
CATTTGTTTTTCCAAGAAAACCTTAACAATGAGTTCAGTGACAATGCTAG
ATTCTTGTTATCAACCATAAGCAATCAACAGTCGATGAATGCAGCAGCTT
TAATTCTAACCAATGGAAGTTAAGCAATAACTTCTTCAACCTAAGGAAAC
TGAAGAAGTTGAAGTTACAAAAGGTGATAAAGAAGATGTTATATAAGAGT
TCCATTGCAGAACAATCAGGATTGGAGGAAAGCAAATCGAGAAACCCAAA
ACTGAATCCATATAGAGATGTAGTTTACAGGCTACAGCCGTTAGCCTTTA
CATAGACTTTACTGAATCAAAATTACAACCCAATTGTAAGATAAACATAT
GTAAAATTTTCACCCAAGGATGCTTCTAGTTCTACATAATGATTAAAACA
ATTAATCCTGATTGCCTACAAAATTAGCAAGGAACTTCACAAACTCTCTT
TCAGGACTCGGAATGAAAGAATCAACCTAGCTGAGCTTCTAGCAAGCGCC
CACAAAAGGGGTTTAATATCTCTAACACATGCAGCTTGGAAATACACAGC
CCTGCCACACCTCATGTTCACATATAGTAATAAGAAGAAACTCTAAAATC
ATGTCAAGAAACAACTCAACCGGTGAGATAAAATTTGCAAATAAAGGGAT
AAAAGTAGGTTTTAGCATATTTAACCCTTTCAATAATTAACCATACAGCT
CTAACCCCCACTTAGTCATCATCATGACCGCCAAAAGAAAACCACCCAAA
AAAAATAAAGATAAAACACAACTACATATCCATATTCTATCAAAAAAATT
CTCATGAATCAACCTTCTGTCCGAGGTGAACCTCCATTACCAACTGTCAT
GAACACTAATGGAGATGAGATTCACTTTGCACAAATAACTTGGTCAAAGT
TCTCTTCTGTTTTGTTCATGACACCTAAATATTGTTCAATTCTTATAAAA
TCTGGCCATGGGCTATAGCCAATCTCTACTCCTTAACATACTGTCTTGAA
ATACCACAGTTGGTCTGCAAGGCACCATTGACTGACGTAACATGACACAT
CTCCAAACATAACACAACAAACTGATATGACATACTCAACCTTCAAAACA
CAGATGTATCCTCAAGATAATACAACCAATCTATATAATATATATAGAGA
GAGAGTGATCACAATAGATTAAAACATACTAACCAACATAAAGGGTGGCA
ATGGGGTGGAAGTTCCCCATTCCGTATAGATATCTGCTCCAAAATGGTAG
GAAACCTCAGTTTTTTCTCTCATGCGCCCTACGCACAGGAAACCATAAAC
ACTGGAAACACAATACCTATACAACTCTTGTTTAGACTTTAATGAGTATT
ATATTTCAATATAGCTAAATTAAAAAAATTATAATGAAAAATCATGAAAA
AGAAATGGGGAATAGGGATCCCTGCAGAGACAAATATGGGGATCCCACTA
GAGGAACACTGGGGAGACATGAATTACGACTGTACACTGCCAAACTAATC
TACTTTAGTAAACAGTGACCCCTGGTCACCAAGCAAACACTGCACAAGAA
AATAAATTAGCCTAAAGCAGTAGGCTTCTTACGGCTCACTCGCACAGTTA
TGATAATATGTTGGTTTAGTATTCAAAGATCAACTCTTGAACCACATTCC
TTGTCACATAAAATTTCCTATCCAAAACCCACCTGTCACCCTTCTCTTCT
TTCTTAAAAAATAAAATAATAAAATAAGGTAAAATTAAATCAATAAATAT
TCAATCACAAGGATTCTTCCTGGTATTAGAAATGTATTCTTGCTAGCTGA
AACACACAATTAACTGTTAAAATACACGTAGAAAGAAAAAAAAAAGGGAG
AAAAATCAGAAACTCCTTAGAAACAGCCAAAAGTATTTATATAGGCAAAC
GACAGCAGATGCTATTGGACAAGTCCAAAGAAGTATTCTTCCAAAGTTCA
AAACATGTAATTAGTAAAATCACAGTGGAAGGAAAAATTAAGAACAGATT
CTAAGGCATAATATAAAGTAACTAAAATTAAACAGGAAAGGGTTTACATT
TCCACTAATAATTAATGAAAGGAGAATGATCCAAAAGGATTCCTGGAAGA
TCATGATAACCAACTTTTTGGGAAATCAAGAATTCCTCTGAGAGGAGGAA
AAAAGAAGAAGAAAATGAAAGAAAAGCGGAGAGATGGAAAAGGGAAGTTA
CAGTCATAATAGAAAGGACCCATTGATGACGGGAATCAGCATTGATGCCA
ATGACAGTGCGGCGAGGGTATCTGAGAATGGTGAAAAGAAGCCAAGAATG
GTATAATCCCATCACCAACATGCCCAAGGGCACCAGCACATAGTCTAAAC
TCTGCTCCTCCATCGTCATCATCTCTCTCTCTCTCTCTATCTCTCTCTTA
CAGGAGAAAACA
back to top

mRNA from alignment at Chromosome01:2581911..2585422-

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G015700.1.v6.1 ID=Manes.01G015700.1.v6.1|Name=Manes.01G015700.1|organism=Manihot esculenta|type=mRNA|length=3512bp|location=Sequence derived from alignment at Chromosome01:2581911..2585422- (Manihot esculenta)
TGTTTTCTCCTGTAAGAGAGAGATAGAGAGAGAGAGAGAGATGATGACGA TGGAGGAGCAGAGTTTAGACTATGTGCTGGTGCCCTTGGGCATGTTGGTG ATGGGATTATACCATTCTTGGCTTCTTTTCACCATTCTCAGATACCCTCG CCGCACTGTCATTGGCATCAATGCTGATTCCCGTCATCAATGGGTCCTTT CTATTATGACTGTAACTTCCCTTTTCCATCTCTCCGCTTTTCTTTCATTT TCTTCTTCTTTTTTCCTCCTCTCAGAGGAATTCTTGATTTCCCAAAAAGT TGGTTATCATGATCTTCCAGGAATCCTTTTGGATCATTCTCCTTTCATTA ATTATTAGTGGAAATGTAAACCCTTTCCTGTTTAATTTTAGTTACTTTAT ATTATGCCTTAGAATCTGTTCTTAATTTTTCCTTCCACTGTGATTTTACT AATTACATGTTTTGAACTTTGGAAGAATACTTCTTTGGACTTGTCCAATA GCATCTGCTGTCGTTTGCCTATATAAATACTTTTGGCTGTTTCTAAGGAG TTTCTGATTTTTCTCCCTTTTTTTTTTCTTTCTACGTGTATTTTAACAGT TAATTGTGTGTTTCAGCTAGCAAGAATACATTTCTAATACCAGGAAGAAT CCTTGTGATTGAATATTTATTGATTTAATTTTACCTTATTTTATTATTTT ATTTTTTAAGAAAGAAGAGAAGGGTGACAGGTGGGTTTTGGATAGGAAAT TTTATGTGACAAGGAATGTGGTTCAAGAGTTGATCTTTGAATACTAAACC AACATATTATCATAACTGTGCGAGTGAGCCGTAAGAAGCCTACTGCTTTA GGCTAATTTATTTTCTTGTGCAGTGTTTGCTTGGTGACCAGGGGTCACTG TTTACTAAAGTAGATTAGTTTGGCAGTGTACAGTCGTAATTCATGTCTCC CCAGTGTTCCTCTAGTGGGATCCCCATATTTGTCTCTGCAGGGATCCCTA TTCCCCATTTCTTTTTCATGATTTTTCATTATAATTTTTTTAATTTAGCT ATATTGAAATATAATACTCATTAAAGTCTAAACAAGAGTTGTATAGGTAT TGTGTTTCCAGTGTTTATGGTTTCCTGTGCGTAGGGCGCATGAGAGAAAA AACTGAGGTTTCCTACCATTTTGGAGCAGATATCTATACGGAATGGGGAA CTTCCACCCCATTGCCACCCTTTATGTTGGTTAGTATGTTTTAATCTATT GTGATCACTCTCTCTCTATATATATTATATAGATTGGTTGTATTATCTTG AGGATACATCTGTGTTTTGAAGGTTGAGTATGTCATATCAGTTTGTTGTG TTATGTTTGGAGATGTGTCATGTTACGTCAGTCAATGGTGCCTTGCAGAC CAACTGTGGTATTTCAAGACAGTATGTTAAGGAGTAGAGATTGGCTATAG CCCATGGCCAGATTTTATAAGAATTGAACAATATTTAGGTGTCATGAACA AAACAGAAGAGAACTTTGACCAAGTTATTTGTGCAAAGTGAATCTCATCT CCATTAGTGTTCATGACAGTTGGTAATGGAGGTTCACCTCGGACAGAAGG TTGATTCATGAGAATTTTTTTGATAGAATATGGATATGTAGTTGTGTTTT ATCTTTATTTTTTTTGGGTGGTTTTCTTTTGGCGGTCATGATGATGACTA AGTGGGGGTTAGAGCTGTATGGTTAATTATTGAAAGGGTTAAATATGCTA AAACCTACTTTTATCCCTTTATTTGCAAATTTTATCTCACCGGTTGAGTT GTTTCTTGACATGATTTTAGAGTTTCTTCTTATTACTATATGTGAACATG AGGTGTGGCAGGGCTGTGTATTTCCAAGCTGCATGTGTTAGAGATATTAA ACCCCTTTTGTGGGCGCTTGCTAGAAGCTCAGCTAGGTTGATTCTTTCAT TCCGAGTCCTGAAAGAGAGTTTGTGAAGTTCCTTGCTAATTTTGTAGGCA ATCAGGATTAATTGTTTTAATCATTATGTAGAACTAGAAGCATCCTTGGG TGAAAATTTTACATATGTTTATCTTACAATTGGGTTGTAATTTTGATTCA GTAAAGTCTATGTAAAGGCTAACGGCTGTAGCCTGTAAACTACATCTCTA TATGGATTCAGTTTTGGGTTTCTCGATTTGCTTTCCTCCAATCCTGATTG TTCTGCAATGGAACTCTTATATAACATCTTCTTTATCACCTTTTGTAACT TCAACTTCTTCAGTTTCCTTAGGTTGAAGAAGTTATTGCTTAACTTCCAT TGGTTAGAATTAAAGCTGCTGCATTCATCGACTGTTGATTGCTTATGGTT GATAACAAGAATCTAGCATTGTCACTGAACTCATTGTTAAGGTTTTCTTG GAAAAACAAATGAACCATAGTTTTTGAAGTGCTCAAGCTCTCCTTTCTTT TCAATTGAAATACATGCTTGGCATGTATGCAAAACCAATGATTGTATCAA CTTTGTATGCATGACACAGACTAGAGTTGATGCATAGCGAGGAGATTAGC CCATAATCCATATGTAAGGCTTGGTTACTTGTTGTTTGAGCAAGTAGTGG TTTATAGTTCGTCATACACTACTTTTTTTTCTTTTTACCTGAAATTTTGT TTTAGAATTTGTTACAGATAAAACTTCCAATTTGACAATATTGACTGTAA ATTTCAGGATCCCCTGAAGAATGGAGTTTTGGCGGTTCAAACAATACGTA ACAACATAATGGCATCTACACTTTTAGCAACAACAGCAATCACTCTCAGC TCATTGATCAGTGTGTTTGTAAGCAGCACATCAAACTCCGGGAACACAGC CTCACAACTAGTATATGGAAATAAGAACTCCATTGTTTCCTCAATTAAGT ACTTCTCTATTCTGCTATGCTTCCTTGTCGCCTTTCTTTGCAATGTGCAG TCAATTAGATACTATGCTCATGTTAGTTTCTTGGCTACTGTACCTACATC AGTAGGCAAAAAGGATTCCATTGAGTATGTTGCCAGAAACTTGAATAGAG GAAGTTTCTTCTGGTCCCTTGGTTTACGCGCTTTCTATCTGTCGTTCCCT CTGTTTCTATGGATCTTCGGGCCAATACCCATGTTTGTGTGCTGCTGCAC GATGTCATTTATTCTTTATTTCTTAGACACGACTACTAGCTTTACCCGGC ATCTGCACACTAAGTTATACAGAGAAGAAATGAAAACTGATGATGTAGAA TCAGCTGTTTGATCTTCCTAAGCGCCATCGAGGATCAAATTTACCGACTC AGTTGCTGTAAGTTCTCTGAACAAACATATTGTAGTATTAACGTCTGCTT AAACTCTGATTAGGAGATCTTCTGTGTGTGTTAGTCTAAACTGCTAGTGG GGTTCACATGAAATCCTATTTATTTATATTATGGGTTAATGCAGATTCAG CGTAGGCAAGAATTAGGCTATATTTGTAAATGTATTGTAAAATGACATAT TTTCATAAAGTA
back to top

Coding sequence (CDS) from alignment at Chromosome01:2581911..2585422-

>Manes.01G015700.1.v6.1 ID=Manes.01G015700.1.v6.1|Name=Manes.01G015700.1|organism=Manihot esculenta|type=CDS|length=726bp|location=Sequence derived from alignment at Chromosome01:2581911..2585422- (Manihot esculenta)
ATGATGACGATGGAGGAGCAGAGTTTAGACTATGTGCTGGTGCCCTTGGG
CATGTTGGTGATGGGATTATACCATTCTTGGCTTCTTTTCACCATTCTCA
GATACCCTCGCCGCACTGTCATTGGCATCAATGCTGATTCCCGTCATCAA
TGGGTCCTTTCTATTATGACTGATCCCCTGAAGAATGGAGTTTTGGCGGT
TCAAACAATACGTAACAACATAATGGCATCTACACTTTTAGCAACAACAG
CAATCACTCTCAGCTCATTGATCAGTGTGTTTGTAAGCAGCACATCAAAC
TCCGGGAACACAGCCTCACAACTAGTATATGGAAATAAGAACTCCATTGT
TTCCTCAATTAAGTACTTCTCTATTCTGCTATGCTTCCTTGTCGCCTTTC
TTTGCAATGTGCAGTCAATTAGATACTATGCTCATGTTAGTTTCTTGGCT
ACTGTACCTACATCAGTAGGCAAAAAGGATTCCATTGAGTATGTTGCCAG
AAACTTGAATAGAGGAAGTTTCTTCTGGTCCCTTGGTTTACGCGCTTTCT
ATCTGTCGTTCCCTCTGTTTCTATGGATCTTCGGGCCAATACCCATGTTT
GTGTGCTGCTGCACGATGTCATTTATTCTTTATTTCTTAGACACGACTAC
TAGCTTTACCCGGCATCTGCACACTAAGTTATACAGAGAAGAAATGAAAA
CTGATGATGTAGAATCAGCTGTTTGA
back to top