Manes.01G015500.1.v6.1 (mRNA)

Overview
NameManes.01G015500.1
Unique NameManes.01G015500.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length2349
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:2515189..2517537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32360203
Longest1
AncestorIdentifiercassava4.1_025670m.v4.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G015500Manes.01G015500.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G015500.1Manes.01G015500.1.v6.1-proteinManihot esculentapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G015500.1.v6.1.five_prime_UTR.1Manes.01G015500.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR
Manes.01G015500.1.v6.1.five_prime_UTR.2Manes.01G015500.1.v6.1.five_prime_UTR.2Manihot esculentafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G015500.1.v6.1.CDS.1Manes.01G015500.1.v6.1.CDS.1Manihot esculentaCDS
Manes.01G015500.1.v6.1.CDS.2Manes.01G015500.1.v6.1.CDS.2Manihot esculentaCDS
Manes.01G015500.1.v6.1.CDS.3Manes.01G015500.1.v6.1.CDS.3Manihot esculentaCDS
Manes.01G015500.1.v6.1.CDS.4Manes.01G015500.1.v6.1.CDS.4Manihot esculentaCDS
Manes.01G015500.1.v6.1.CDS.5Manes.01G015500.1.v6.1.CDS.5Manihot esculentaCDS
Manes.01G015500.1.v6.1.CDS.6Manes.01G015500.1.v6.1.CDS.6Manihot esculentaCDS
Manes.01G015500.1.v6.1.CDS.7Manes.01G015500.1.v6.1.CDS.7Manihot esculentaCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G015500.1.v6.1 ID=Manes.01G015500.1.v6.1|Name=Manes.01G015500.1|organism=Manihot esculenta|type=mRNA|length=2349bp
CACCCACATGCATCCACAATCTCTAATACTCTTCCCTATCAATTCGCCAT
TGCAGAGATTTTCTTCACCTCAAAAGGTCTGTTTTCTTCTTCTTCTCCAT
CTTATTTGATCTCTCATCTCACCAGAGATTTCTCTTGTAAAATTAATGTT
TCTATTTTAGTTTACATCTTTCTATCCAAATTAGTTTTTAACCCTCATCA
ATGTAGATCCTGCATGATAAGCTTTTTGATTTTCTTCATTGATAACTTTT
TGTTCATGTCGTATGATGCCTCTGATCCCAATAACTTTACGTTCCTTGTC
GAATTTATGAATGAAATCTGAAAAATGTAAGGATTCTTGAAATTGGGTTT
TGTAAGGATCCTCCTGTCTCAATATTGTCAATAAGAACGTAAAAAATCTA
TTGTACCCATTTGAAATTGAAGCTTAATCTACAGGCTAATTGGGTGAATT
TCTTTGTTTTTCCTTGTGCAGTTGGGGAAATGGCAGACGTCTGGTTGGGA
TCTCATACTTTAAGATCTCATGGAGCAAAGGTGGCAAGAATACACCTGCA
TGATTGGCTAATTCTGATACTTCTTGTGATCATTGATGGCCTTTTGAACC
TTATTGAACCTTTTCACCGATTTGTCGGGCAAGGGATGATGACAGATTTA
AGTTACCCATTTAAACCCAACACTGTACCTGTGTGGGCCGTTCCAGTATG
TATCCTGAATTATTAATTATATTTGTTTAAATTTACAATCCTTTGATTAG
TATTTTTGTCAGTTTTGAAACTAATTTTGTGTTAAAGAAAATTGGTTGTT
GTGATCTTCTGTTTCTTGTTCACAGATTCTTGCTGGAGTTTTGCCAGTTG
CTATCTTTTCTGTGTACTATTATTATAGAAAGGATGTCTATGACTTGCAT
CATGCCATACTGGGTATTTCTCATATACTTTTTCTTTAGGGCATTGGAAA
TTTTGTATTTGTTCTTCTTGCACTATGAGGCGGATACCTAATTAACAATT
TATTACATACAACCGTTATATGTACAACAGAGATTCTGATCGCTAATTGT
AAAGAGACTCATATGAAAAACCCATTATAATCAATTGTTTTAATAAAACC
GTTGTACATATACAATCGTATTTTGCAATTTCTTTGATTATTGGTCTATT
ATAATTCGATGACATTTTCCTCTTTATACTCAGTTCTGGTGAAATAAAAT
TTAGATGCTAATAGCTCATTGTATCATTACATTGTTGTGCAAGATCAGGG
CTACTGTTTTCTCTTCTTGCTACTGGAGTTATAACGGATGCTATCAAAGA
TGCTGTTGGCCGGCCACGGCCAAACTTCTTTTGGAGGTGTTTTCCTGATG
GAAAAGCGGTACATCAATCTCCATTTTCATTTTCTTTTATCATCAGAAAA
GTGAAATAATTTTTTCTAAATAAATCCTTCACCTTAAAGCTAGCTCCATA
GCCTAACTGTTTTTTGTTTGCATTCTCTCCAGGCATTTGATCCGGTTACC
TATGATGTTATTTGTCATGGAGATGCCCACATTATAAAGGAAGGATACAA
AAGCTTTCCTAGTGGGCATTCTTCATGTAAATGGAGCATATGTTTACACA
GATATTTCTCCAATCATATATAATTTAATTAGTCCTTATCCAAATCTAAT
AATTTCCATTTGCAATGCAGGGTCCTTTGCAGGTCTCACTTTCCTTGCCT
GGTACATGTCAGGGAAACTCAGGGTGTTCGATCGCAGGGGGCACGTAGCT
AAACTCTGTATTGTACTTATTCCAGTGCTAATTGCTATTCTTGTCGGCAT
TTCTCGTGTGGATGATTACTGGCACCATTGGACTGATGTCTTTGCTGGAG
CACTTATAGGTTTCCTAATTCTGAAATTTTAATCATATGATCAGATTTCT
AAATTCTTGTGGAACTATTGAAAGCCCACTTGTTTGAAAAATGCCATTTA
ATTTCTTTGGATACCCCTTTTCTTTTAATTCAGGAACAATTGTAGCTGCA
TTTTGTTATTTACAATTTTTCCCTTACCCATATGAGACTGAAGGTATGCT
AATAATACCCAGATAATACTATCTTCTTCGACTGTTTTCATTTTCGAGTA
CATTATATAGGTCTGAACAACACAGCTATTTTGTTTAGATATTGTTTTAT
GTCATTTTGATGTATTTTCATTTCCTATTTTGACATTGTAGGTTGGGCAC
CTCATGCTTTTTTCGAAATGTTGGCAGAGAGGACTAGAGTTCAGTCCTCA
GGTAGGACTAATTCAATTCGTATGGGAGAGATGACAGATATTGAAACTGC
ATTCATGGCTGGCGATCCTGAGAGAGTGTGTAATCCAGAACAACGTTGA
back to top

mRNA from alignment at Chromosome01:2515189..2517537+

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G015500.1.v6.1 ID=Manes.01G015500.1.v6.1|Name=Manes.01G015500.1|organism=Manihot esculenta|type=mRNA|length=2349bp|location=Sequence derived from alignment at Chromosome01:2515189..2517537+ (Manihot esculenta)
CACCCACATGCATCCACAATCTCTAATACTCTTCCCTATCAATTCGCCAT TGCAGAGATTTTCTTCACCTCAAAAGGTCTGTTTTCTTCTTCTTCTCCAT CTTATTTGATCTCTCATCTCACCAGAGATTTCTCTTGTAAAATTAATGTT TCTATTTTAGTTTACATCTTTCTATCCAAATTAGTTTTTAACCCTCATCA ATGTAGATCCTGCATGATAAGCTTTTTGATTTTCTTCATTGATAACTTTT TGTTCATGTCGTATGATGCCTCTGATCCCAATAACTTTACGTTCCTTGTC GAATTTATGAATGAAATCTGAAAAATGTAAGGATTCTTGAAATTGGGTTT TGTAAGGATCCTCCTGTCTCAATATTGTCAATAAGAACGTAAAAAATCTA TTGTACCCATTTGAAATTGAAGCTTAATCTACAGGCTAATTGGGTGAATT TCTTTGTTTTTCCTTGTGCAGTTGGGGAAATGGCAGACGTCTGGTTGGGA TCTCATACTTTAAGATCTCATGGAGCAAAGGTGGCAAGAATACACCTGCA TGATTGGCTAATTCTGATACTTCTTGTGATCATTGATGGCCTTTTGAACC TTATTGAACCTTTTCACCGATTTGTCGGGCAAGGGATGATGACAGATTTA AGTTACCCATTTAAACCCAACACTGTACCTGTGTGGGCCGTTCCAGTATG TATCCTGAATTATTAATTATATTTGTTTAAATTTACAATCCTTTGATTAG TATTTTTGTCAGTTTTGAAACTAATTTTGTGTTAAAGAAAATTGGTTGTT GTGATCTTCTGTTTCTTGTTCACAGATTCTTGCTGGAGTTTTGCCAGTTG CTATCTTTTCTGTGTACTATTATTATAGAAAGGATGTCTATGACTTGCAT CATGCCATACTGGGTATTTCTCATATACTTTTTCTTTAGGGCATTGGAAA TTTTGTATTTGTTCTTCTTGCACTATGAGGCGGATACCTAATTAACAATT TATTACATACAACCGTTATATGTACAACAGAGATTCTGATCGCTAATTGT AAAGAGACTCATATGAAAAACCCATTATAATCAATTGTTTTAATAAAACC GTTGTACATATACAATCGTATTTTGCAATTTCTTTGATTATTGGTCTATT ATAATTCGATGACATTTTCCTCTTTATACTCAGTTCTGGTGAAATAAAAT TTAGATGCTAATAGCTCATTGTATCATTACATTGTTGTGCAAGATCAGGG CTACTGTTTTCTCTTCTTGCTACTGGAGTTATAACGGATGCTATCAAAGA TGCTGTTGGCCGGCCACGGCCAAACTTCTTTTGGAGGTGTTTTCCTGATG GAAAAGCGGTACATCAATCTCCATTTTCATTTTCTTTTATCATCAGAAAA GTGAAATAATTTTTTCTAAATAAATCCTTCACCTTAAAGCTAGCTCCATA GCCTAACTGTTTTTTGTTTGCATTCTCTCCAGGCATTTGATCCGGTTACC TATGATGTTATTTGTCATGGAGATGCCCACATTATAAAGGAAGGATACAA AAGCTTTCCTAGTGGGCATTCTTCATGTAAATGGAGCATATGTTTACACA GATATTTCTCCAATCATATATAATTTAATTAGTCCTTATCCAAATCTAAT AATTTCCATTTGCAATGCAGGGTCCTTTGCAGGTCTCACTTTCCTTGCCT GGTACATGTCAGGGAAACTCAGGGTGTTCGATCGCAGGGGGCACGTAGCT AAACTCTGTATTGTACTTATTCCAGTGCTAATTGCTATTCTTGTCGGCAT TTCTCGTGTGGATGATTACTGGCACCATTGGACTGATGTCTTTGCTGGAG CACTTATAGGTTTCCTAATTCTGAAATTTTAATCATATGATCAGATTTCT AAATTCTTGTGGAACTATTGAAAGCCCACTTGTTTGAAAAATGCCATTTA ATTTCTTTGGATACCCCTTTTCTTTTAATTCAGGAACAATTGTAGCTGCA TTTTGTTATTTACAATTTTTCCCTTACCCATATGAGACTGAAGGTATGCT AATAATACCCAGATAATACTATCTTCTTCGACTGTTTTCATTTTCGAGTA CATTATATAGGTCTGAACAACACAGCTATTTTGTTTAGATATTGTTTTAT GTCATTTTGATGTATTTTCATTTCCTATTTTGACATTGTAGGTTGGGCAC CTCATGCTTTTTTCGAAATGTTGGCAGAGAGGACTAGAGTTCAGTCCTCA GGTAGGACTAATTCAATTCGTATGGGAGAGATGACAGATATTGAAACTGC ATTCATGGCTGGCGATCCTGAGAGAGTGTGTAATCCAGAACAACGTTGA
back to top

Coding sequence (CDS) from alignment at Chromosome01:2515189..2517537+

>Manes.01G015500.1.v6.1 ID=Manes.01G015500.1.v6.1|Name=Manes.01G015500.1|organism=Manihot esculenta|type=CDS|length=915bp|location=Sequence derived from alignment at Chromosome01:2515189..2517537+ (Manihot esculenta)
ATGGCAGACGTCTGGTTGGGATCTCATACTTTAAGATCTCATGGAGCAAA
GGTGGCAAGAATACACCTGCATGATTGGCTAATTCTGATACTTCTTGTGA
TCATTGATGGCCTTTTGAACCTTATTGAACCTTTTCACCGATTTGTCGGG
CAAGGGATGATGACAGATTTAAGTTACCCATTTAAACCCAACACTGTACC
TGTGTGGGCCGTTCCAATTCTTGCTGGAGTTTTGCCAGTTGCTATCTTTT
CTGTGTACTATTATTATAGAAAGGATGTCTATGACTTGCATCATGCCATA
CTGGGGCTACTGTTTTCTCTTCTTGCTACTGGAGTTATAACGGATGCTAT
CAAAGATGCTGTTGGCCGGCCACGGCCAAACTTCTTTTGGAGGTGTTTTC
CTGATGGAAAAGCGGCATTTGATCCGGTTACCTATGATGTTATTTGTCAT
GGAGATGCCCACATTATAAAGGAAGGATACAAAAGCTTTCCTAGTGGGCA
TTCTTCATGGTCCTTTGCAGGTCTCACTTTCCTTGCCTGGTACATGTCAG
GGAAACTCAGGGTGTTCGATCGCAGGGGGCACGTAGCTAAACTCTGTATT
GTACTTATTCCAGTGCTAATTGCTATTCTTGTCGGCATTTCTCGTGTGGA
TGATTACTGGCACCATTGGACTGATGTCTTTGCTGGAGCACTTATAGGAA
CAATTGTAGCTGCATTTTGTTATTTACAATTTTTCCCTTACCCATATGAG
ACTGAAGGTTGGGCACCTCATGCTTTTTTCGAAATGTTGGCAGAGAGGAC
TAGAGTTCAGTCCTCAGGTAGGACTAATTCAATTCGTATGGGAGAGATGA
CAGATATTGAAACTGCATTCATGGCTGGCGATCCTGAGAGAGTGTGTAAT
CCAGAACAACGTTGA
back to top