Manes.01G015300.1.v6.1 (mRNA)

Overview
NameManes.01G015300.1
Unique NameManes.01G015300.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length4280
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:2497340..2501619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32357024
Longest1
AncestorIdentifiercassava4.1_009288m.v4.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G015300Manes.01G015300.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G015300.1Manes.01G015300.1.v6.1-proteinManihot esculentapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G015300.1.v6.1.five_prime_UTR.1Manes.01G015300.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G015300.1.v6.1.CDS.1Manes.01G015300.1.v6.1.CDS.1Manihot esculentaCDS
Manes.01G015300.1.v6.1.CDS.2Manes.01G015300.1.v6.1.CDS.2Manihot esculentaCDS
Manes.01G015300.1.v6.1.CDS.3Manes.01G015300.1.v6.1.CDS.3Manihot esculentaCDS
Manes.01G015300.1.v6.1.CDS.4Manes.01G015300.1.v6.1.CDS.4Manihot esculentaCDS
Manes.01G015300.1.v6.1.CDS.5Manes.01G015300.1.v6.1.CDS.5Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G015300.1.v6.1.three_prime_UTR.1Manes.01G015300.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G015300.1.v6.1 ID=Manes.01G015300.1.v6.1|Name=Manes.01G015300.1|organism=Manihot esculenta|type=mRNA|length=4280bp
ATAGCAAATAAAGAAAGCAAAAGCTCTTTAATGGATTCCAGAGTCTTGAG
TCTTGTGCTCTTTCTTTGTTAAGCAATTGACCATCTTTCTTTTCTTTTAT
TTTCTTTTCTCTCCTTTCCTTTCTTTTCCTTTCCAACAAACAACAAAGAC
AAACACTAGCCCACCTAACTACACCCTCTTTCAAATTAATCTCAAAGGTC
CCTTCTTTACTATTTCCATTTTCATTTTAATTTAAAAAATCTCAATAAAG
AGACAAACTCATCAATGCTAATCAAAATCTCTTCTTTTTCATCGCATAAT
AACTAAAAAACAAATCTCTTCCTCATTCCCTATCTCTTTTACTCTCTCTG
AAGCTTAATTACTTGTGATTTTCCTTTTCTTTCTGTTTGTTTCTCTGTAA
AATCATGCCTGTTTTTGCAGAGAGTTCATCCACTATAGCAGACCAAATCA
AGCTAAGAAAACCCAGAAACCAATTCCATCACCATCATCAGCAAGAAGAA
AATCCCATTTCTATACAAGAAACAGATCCAAACCCACATATCTCTCGCTC
CTCCAAATCCACAATCTCCTCTATTTTCCTTTCCCCTTTCTCCACAAACA
CCGCTGAGCCCACCACCAAGAAAAAGAGCACCACATTCAGAGGTTTAGGA
TGCACCGCTGGGGCCGCGCAGCAAGTGTCGGTGCCGGCGATGATACGGTC
ATCGGCGGAGTGGGAGGGGAAGAGGCTGAAGAAGAAAAATAATCTGCAGC
GGCAGAAAAGGAAGAAAGACAATATAAGGATTTGCGGTGAGAGTAACAAA
CCAAGCTTGCAGGGTCTGGGTGAAGGGAGCAACAGCAATGGAAACAGCGA
CAACAATGGGAATAGTGGGAGTTTGAATCCTGGGAGTTGTTTGGTTATTC
AGGATGTGTGGTGTGGCCCTGGAATTGGGTTTTCTTCGGATGCTGTTGTT
GGGTCTGTGGATTGTGTTGTGGGGAGGAGAAATGCGTCTGGGAGAGGGAA
GATTGATGGGGACAACAACAAAATCAATCAAAGGGAGAGGGAGGTATACT
TTTAATGCTTCTTTCTTTGACACTTCACATCACTTCACTTCATTTTCTTG
CTTTCTTGTACGTATAATGCAGCTATGGCCAGGTATAGTATGGATGCTGA
CAGATTCTCAATTGGAAAACATCTATCTATATAATAAAAGGTTCAATTTG
TGTTTGATCTCAGGAGGGTTATTGACTTTCTGCTCGGCAATTGATCTAAG
ATTTAATGCATTTATTGCTGTTATTCAACAAAATTTATTTTGGGTTTGAA
CTAAGTTATTTTGAGGGGCAGTTGATCGAGTTAATTGCTTGATTTATTTA
CTACCAAAATCTATCCTATAATTATGATATTGGGTTGCTTTTTATTTTTG
ATTTTTCTGCTATTTATTAATGTCTTGTTTGGGATTGCAGGGGCTGGTAA
ATCCCAATACCAATCTCTTTAGAAAAGTATTAGGGTTTTCTAAACTTTCA
TCTATTAGATATCAATCCATAGTTTATGAGTGTAATTAGCATCAGTATTA
GTGTTATATTTTTGGGTATCATCACCATTGGAGTCCAAGATCCCTTTTGC
TTCTATTCTGTTCTTTCCACCTTCCCTGTTTTCTCATTGTTCTATGTAAA
TTACTTTTTCTTTTGATGGTGGTGGTGGTAGTGTGTGTGTTTTCTTTTTT
GAGAGGATGGGGGCTCTGCTATGTGCTATTGTTTTATTAATCTCTGTATG
CGTGCACGTATGATCTTACATGGTTAATGACAAAAAAAAAAATTCTATGG
GGCTAAAATTGCGGACCCTACCATATCAGCTTAACTGTTAACTTATACGG
AGATTGTTGATAAGTACCGCAGGTTTTAGAATTAGAGGACACACTTCTCT
CGGGTGTTGATTTTCTTGGCTTCATATTTAGATTGTTTTTTCTTGGATTC
ACTTCTTGTTTAGGTTTGTTTTTCATGTGCAGAGCTAAGAATTTGATTTT
CTTCTGCTTAACTGTTCACTTTGTGCATGTAGTTTTTGTGTTTATGACTT
ATTTTTGTATGTAGCTTATTGTGTCCTGTGAATCTTGTCAGCGCTCTGCA
TATTTAGGGAGGCGGGCCACAGTGAATCCTGAAACTCTTCCTTTTCTGGA
TACGGACCCTGCTTTTGTAGCATCTTACCCTGAATCTGAAGTCTTTGGAA
GTAGATATTACCGGCATGTTCGGCATCCTTCTCCTGATGGTTTAGCTGAG
GTGTGCCCATTGCTTAAAGTTTTTCTACTCTAATGTCTCTGTGTGTCATG
TTATCTTGGCGTGCTTGTGCTTCCACTGGGTGATCAGAGAGCACTGCATT
ATGAATAGGTGTTGATTATTATGGTGGATAGGCTGATTTTCTCATGGAAA
TGATTTTTCTTTATTGAAACATCTCTCTCTCTCTCTCTCAAGATATATTA
GATAACTAAATTTGATTTTTAATATACAACAACAGCCCTCAACTTAAATT
TAATGATTTCTTCTGTACTTCTTGTCATAGGGGAGTGAAGAGGATGGAGA
ATTGTTACTTTTATCTTTTTTAATCTCCACTGTTATCCTAGTGTCAATTT
TTCTCAATTTTCAATTTCTTGTTGGAGAGGGGGAGAGATAGAGATTGTTT
CTGGGTTAACAGTTTGAGGGCCAGCTAGCAACCAAGTTGTGAAAACGGAA
GTGAATCCTCTATAACCCTGATGTTTGATATTGATCTGCTTAGAAGAAGA
AACTATTACGATTTAAAGTGTTCAAAGCTTGTAAGCTGTTTCCTTCTTTC
ATCTTGCTTTGTCAAATATTGCAACATATAATTCTACCCGGGNNNNNNNN
NNNNNNNNNNNNNGTTAAAGGGTGATGTTTCAATGGGACATAACGATATC
CTAAAGATTGAAACAAGAACTCAAAGATGGGCTAAGAAATGACACTTTGC
AGGTATTCCGTAATGACATTGCTGGTTGAATTCTTAGTTTGCATTAGTTT
ATTTGCCTACATTGTTTAGGATTTTGATCATTCGTAAGCTACAAACCGAG
TTGTATCATGACTTGCGGATTAGGACAGGGCAAGTTGAAGTTTTGTTTCA
GTTCACTTATTCCTAACTTTGGCCAAAGAAATTAAGATGTCTATGATCTT
TTCTAAAAAAATTATTTCTTAAAGGTTTGGTGAATGAGTTATAACTTATA
ATTAAGAGTCTGTTGGGTGGAAGCTTTCAATCATATGTTTCTTAAATTGC
TCTTTGGAATATTTCTTCTTGGAATTTAAGACAATTTAAATCCCCTTTGC
TAAATTGCAGATAATGATGCTCCAGAATAGTTTTATGATGGGAGGAAGGT
TGGATAGATATAGCGACTGGAGGCTCGATATCGATCACATGTCATATGAG
GTAGTTTATATCCCTTTAGTTGCCTTTTATTTCGATTATACTTCCTGGCA
ATGGTGTGTCGGGCTACTGAGTGCAAATCGGAGGGGTTCGGTTCTTCCGG
TGGGCAATTTTGTAAGTAAAATGCTGAAGAGTGGGAGTGGAATTGTATTG
TGGGAACCCCTTTTTCAGTCTCTGCTTAAGCTTGTCCACCAGGCTCACTA
TAGCTATGTTATATCACGCAATGCTGGTAAAATAATTTAGAATTTCTTTG
TCTTGGTGCTAACAGCAACTGCTGGAGTTAGGTGAGAGAATTGGTCATGT
GAGTACTGGACTGAAAGAAGATGAAATGAGCCAATGTGTCAGGAAAATGA
AGCTCTCAATTATCAACGACCTTTCATCACATTTACCCATAATACCGGAT
AAGAACTGCAGCATTTGTCAGGTAATACTTCCAGCATCATATTTCATCTC
TCATTTCTTTAATTATCTCATCATTGCTCTCATTTACACGTCTATATACA
GGAGGATTATGAAGCAGATGATGAGCTGGGGAAGCTGGATTGTGGACATG
GCTTTCACATGCAATGTATAAAGCAATGGCTTGCACAGAAAAATATTTGC
CCGGTTTGCAAGACTGAACCGGTGGCTCGAGGATAAAGCCGGTGTTCTTT
CATTATCGTCTTGGATGTAGTTCTTTCAGATTGCTGCTGCTCTTTAGTCC
TCTCCTCGTCTCCCAACATGGTGTATAGATTTTACCAGTATACATAATCT
GAATTCATTCATTGGTGTGAAGCTTCAAATTTTTGAGTTGAAATGATAGG
GGTCCGGACGATTTAGCAGTTCATGCTTATTGAAATTATAGTACTGGAAT
TTTTATGGAAATGATTTATTTTGATATTCA
back to top

mRNA from alignment at Chromosome01:2497340..2501619+

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G015300.1.v6.1 ID=Manes.01G015300.1.v6.1|Name=Manes.01G015300.1|organism=Manihot esculenta|type=mRNA|length=4280bp|location=Sequence derived from alignment at Chromosome01:2497340..2501619+ (Manihot esculenta)
ATAGCAAATAAAGAAAGCAAAAGCTCTTTAATGGATTCCAGAGTCTTGAG TCTTGTGCTCTTTCTTTGTTAAGCAATTGACCATCTTTCTTTTCTTTTAT TTTCTTTTCTCTCCTTTCCTTTCTTTTCCTTTCCAACAAACAACAAAGAC AAACACTAGCCCACCTAACTACACCCTCTTTCAAATTAATCTCAAAGGTC CCTTCTTTACTATTTCCATTTTCATTTTAATTTAAAAAATCTCAATAAAG AGACAAACTCATCAATGCTAATCAAAATCTCTTCTTTTTCATCGCATAAT AACTAAAAAACAAATCTCTTCCTCATTCCCTATCTCTTTTACTCTCTCTG AAGCTTAATTACTTGTGATTTTCCTTTTCTTTCTGTTTGTTTCTCTGTAA AATCATGCCTGTTTTTGCAGAGAGTTCATCCACTATAGCAGACCAAATCA AGCTAAGAAAACCCAGAAACCAATTCCATCACCATCATCAGCAAGAAGAA AATCCCATTTCTATACAAGAAACAGATCCAAACCCACATATCTCTCGCTC CTCCAAATCCACAATCTCCTCTATTTTCCTTTCCCCTTTCTCCACAAACA CCGCTGAGCCCACCACCAAGAAAAAGAGCACCACATTCAGAGGTTTAGGA TGCACCGCTGGGGCCGCGCAGCAAGTGTCGGTGCCGGCGATGATACGGTC ATCGGCGGAGTGGGAGGGGAAGAGGCTGAAGAAGAAAAATAATCTGCAGC GGCAGAAAAGGAAGAAAGACAATATAAGGATTTGCGGTGAGAGTAACAAA CCAAGCTTGCAGGGTCTGGGTGAAGGGAGCAACAGCAATGGAAACAGCGA CAACAATGGGAATAGTGGGAGTTTGAATCCTGGGAGTTGTTTGGTTATTC AGGATGTGTGGTGTGGCCCTGGAATTGGGTTTTCTTCGGATGCTGTTGTT GGGTCTGTGGATTGTGTTGTGGGGAGGAGAAATGCGTCTGGGAGAGGGAA GATTGATGGGGACAACAACAAAATCAATCAAAGGGAGAGGGAGGTATACT TTTAATGCTTCTTTCTTTGACACTTCACATCACTTCACTTCATTTTCTTG CTTTCTTGTACGTATAATGCAGCTATGGCCAGGTATAGTATGGATGCTGA CAGATTCTCAATTGGAAAACATCTATCTATATAATAAAAGGTTCAATTTG TGTTTGATCTCAGGAGGGTTATTGACTTTCTGCTCGGCAATTGATCTAAG ATTTAATGCATTTATTGCTGTTATTCAACAAAATTTATTTTGGGTTTGAA CTAAGTTATTTTGAGGGGCAGTTGATCGAGTTAATTGCTTGATTTATTTA CTACCAAAATCTATCCTATAATTATGATATTGGGTTGCTTTTTATTTTTG ATTTTTCTGCTATTTATTAATGTCTTGTTTGGGATTGCAGGGGCTGGTAA ATCCCAATACCAATCTCTTTAGAAAAGTATTAGGGTTTTCTAAACTTTCA TCTATTAGATATCAATCCATAGTTTATGAGTGTAATTAGCATCAGTATTA GTGTTATATTTTTGGGTATCATCACCATTGGAGTCCAAGATCCCTTTTGC TTCTATTCTGTTCTTTCCACCTTCCCTGTTTTCTCATTGTTCTATGTAAA TTACTTTTTCTTTTGATGGTGGTGGTGGTAGTGTGTGTGTTTTCTTTTTT GAGAGGATGGGGGCTCTGCTATGTGCTATTGTTTTATTAATCTCTGTATG CGTGCACGTATGATCTTACATGGTTAATGACAAAAAAAAAAATTCTATGG GGCTAAAATTGCGGACCCTACCATATCAGCTTAACTGTTAACTTATACGG AGATTGTTGATAAGTACCGCAGGTTTTAGAATTAGAGGACACACTTCTCT CGGGTGTTGATTTTCTTGGCTTCATATTTAGATTGTTTTTTCTTGGATTC ACTTCTTGTTTAGGTTTGTTTTTCATGTGCAGAGCTAAGAATTTGATTTT CTTCTGCTTAACTGTTCACTTTGTGCATGTAGTTTTTGTGTTTATGACTT ATTTTTGTATGTAGCTTATTGTGTCCTGTGAATCTTGTCAGCGCTCTGCA TATTTAGGGAGGCGGGCCACAGTGAATCCTGAAACTCTTCCTTTTCTGGA TACGGACCCTGCTTTTGTAGCATCTTACCCTGAATCTGAAGTCTTTGGAA GTAGATATTACCGGCATGTTCGGCATCCTTCTCCTGATGGTTTAGCTGAG GTGTGCCCATTGCTTAAAGTTTTTCTACTCTAATGTCTCTGTGTGTCATG TTATCTTGGCGTGCTTGTGCTTCCACTGGGTGATCAGAGAGCACTGCATT ATGAATAGGTGTTGATTATTATGGTGGATAGGCTGATTTTCTCATGGAAA TGATTTTTCTTTATTGAAACATCTCTCTCTCTCTCTCTCAAGATATATTA GATAACTAAATTTGATTTTTAATATACAACAACAGCCCTCAACTTAAATT TAATGATTTCTTCTGTACTTCTTGTCATAGGGGAGTGAAGAGGATGGAGA ATTGTTACTTTTATCTTTTTTAATCTCCACTGTTATCCTAGTGTCAATTT TTCTCAATTTTCAATTTCTTGTTGGAGAGGGGGAGAGATAGAGATTGTTT CTGGGTTAACAGTTTGAGGGCCAGCTAGCAACCAAGTTGTGAAAACGGAA GTGAATCCTCTATAACCCTGATGTTTGATATTGATCTGCTTAGAAGAAGA AACTATTACGATTTAAAGTGTTCAAAGCTTGTAAGCTGTTTCCTTCTTTC ATCTTGCTTTGTCAAATATTGCAACATATAATTCTACCCGGGNNNNNNNN NNNNNNNNNNNNNGTTAAAGGGTGATGTTTCAATGGGACATAACGATATC CTAAAGATTGAAACAAGAACTCAAAGATGGGCTAAGAAATGACACTTTGC AGGTATTCCGTAATGACATTGCTGGTTGAATTCTTAGTTTGCATTAGTTT ATTTGCCTACATTGTTTAGGATTTTGATCATTCGTAAGCTACAAACCGAG TTGTATCATGACTTGCGGATTAGGACAGGGCAAGTTGAAGTTTTGTTTCA GTTCACTTATTCCTAACTTTGGCCAAAGAAATTAAGATGTCTATGATCTT TTCTAAAAAAATTATTTCTTAAAGGTTTGGTGAATGAGTTATAACTTATA ATTAAGAGTCTGTTGGGTGGAAGCTTTCAATCATATGTTTCTTAAATTGC TCTTTGGAATATTTCTTCTTGGAATTTAAGACAATTTAAATCCCCTTTGC TAAATTGCAGATAATGATGCTCCAGAATAGTTTTATGATGGGAGGAAGGT TGGATAGATATAGCGACTGGAGGCTCGATATCGATCACATGTCATATGAG GTAGTTTATATCCCTTTAGTTGCCTTTTATTTCGATTATACTTCCTGGCA ATGGTGTGTCGGGCTACTGAGTGCAAATCGGAGGGGTTCGGTTCTTCCGG TGGGCAATTTTGTAAGTAAAATGCTGAAGAGTGGGAGTGGAATTGTATTG TGGGAACCCCTTTTTCAGTCTCTGCTTAAGCTTGTCCACCAGGCTCACTA TAGCTATGTTATATCACGCAATGCTGGTAAAATAATTTAGAATTTCTTTG TCTTGGTGCTAACAGCAACTGCTGGAGTTAGGTGAGAGAATTGGTCATGT GAGTACTGGACTGAAAGAAGATGAAATGAGCCAATGTGTCAGGAAAATGA AGCTCTCAATTATCAACGACCTTTCATCACATTTACCCATAATACCGGAT AAGAACTGCAGCATTTGTCAGGTAATACTTCCAGCATCATATTTCATCTC TCATTTCTTTAATTATCTCATCATTGCTCTCATTTACACGTCTATATACA GGAGGATTATGAAGCAGATGATGAGCTGGGGAAGCTGGATTGTGGACATG GCTTTCACATGCAATGTATAAAGCAATGGCTTGCACAGAAAAATATTTGC CCGGTTTGCAAGACTGAACCGGTGGCTCGAGGATAAAGCCGGTGTTCTTT CATTATCGTCTTGGATGTAGTTCTTTCAGATTGCTGCTGCTCTTTAGTCC TCTCCTCGTCTCCCAACATGGTGTATAGATTTTACCAGTATACATAATCT GAATTCATTCATTGGTGTGAAGCTTCAAATTTTTGAGTTGAAATGATAGG GGTCCGGACGATTTAGCAGTTCATGCTTATTGAAATTATAGTACTGGAAT TTTTATGGAAATGATTTATTTTGATATTCA
back to top

Coding sequence (CDS) from alignment at Chromosome01:2497340..2501619+

>Manes.01G015300.1.v6.1 ID=Manes.01G015300.1.v6.1|Name=Manes.01G015300.1|organism=Manihot esculenta|type=CDS|length=1179bp|location=Sequence derived from alignment at Chromosome01:2497340..2501619+ (Manihot esculenta)
ATGCCTGTTTTTGCAGAGAGTTCATCCACTATAGCAGACCAAATCAAGCT
AAGAAAACCCAGAAACCAATTCCATCACCATCATCAGCAAGAAGAAAATC
CCATTTCTATACAAGAAACAGATCCAAACCCACATATCTCTCGCTCCTCC
AAATCCACAATCTCCTCTATTTTCCTTTCCCCTTTCTCCACAAACACCGC
TGAGCCCACCACCAAGAAAAAGAGCACCACATTCAGAGGTTTAGGATGCA
CCGCTGGGGCCGCGCAGCAAGTGTCGGTGCCGGCGATGATACGGTCATCG
GCGGAGTGGGAGGGGAAGAGGCTGAAGAAGAAAAATAATCTGCAGCGGCA
GAAAAGGAAGAAAGACAATATAAGGATTTGCGGTGAGAGTAACAAACCAA
GCTTGCAGGGTCTGGGTGAAGGGAGCAACAGCAATGGAAACAGCGACAAC
AATGGGAATAGTGGGAGTTTGAATCCTGGGAGTTGTTTGGTTATTCAGGA
TGTGTGGTGTGGCCCTGGAATTGGGTTTTCTTCGGATGCTGTTGTTGGGT
CTGTGGATTGTGTTGTGGGGAGGAGAAATGCGTCTGGGAGAGGGAAGATT
GATGGGGACAACAACAAAATCAATCAAAGGGAGAGGGAGCGCTCTGCATA
TTTAGGGAGGCGGGCCACAGTGAATCCTGAAACTCTTCCTTTTCTGGATA
CGGACCCTGCTTTTGTAGCATCTTACCCTGAATCTGAAGTCTTTGGAAGT
AGATATTACCGGCATGTTCGGCATCCTTCTCCTGATGGTTTAGCTGAGAT
AATGATGCTCCAGAATAGTTTTATGATGGGAGGAAGGTTGGATAGATATA
GCGACTGGAGGCTCGATATCGATCACATGTCATATGAGCAACTGCTGGAG
TTAGGTGAGAGAATTGGTCATGTGAGTACTGGACTGAAAGAAGATGAAAT
GAGCCAATGTGTCAGGAAAATGAAGCTCTCAATTATCAACGACCTTTCAT
CACATTTACCCATAATACCGGATAAGAACTGCAGCATTTGTCAGGAGGAT
TATGAAGCAGATGATGAGCTGGGGAAGCTGGATTGTGGACATGGCTTTCA
CATGCAATGTATAAAGCAATGGCTTGCACAGAAAAATATTTGCCCGGTTT
GCAAGACTGAACCGGTGGCTCGAGGATAA
back to top