Manes.01G014300.1.v6.1 (mRNA)

Overview
NameManes.01G014300.1
Unique NameManes.01G014300.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length1550
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:2406315..2407864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32357151
Longest1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G014300Manes.01G014300.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G014300.1Manes.01G014300.1.v6.1-proteinManihot esculentapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G014300.1.v6.1.CDS.1Manes.01G014300.1.v6.1.CDS.1Manihot esculentaCDS
Manes.01G014300.1.v6.1.CDS.2Manes.01G014300.1.v6.1.CDS.2Manihot esculentaCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G014300.1.v6.1 ID=Manes.01G014300.1.v6.1|Name=Manes.01G014300.1|organism=Manihot esculenta|type=mRNA|length=1550bp
ATGAAGAACTTCAACAAGAAACTTCGCTCAAGGATCTTATCAACCCTCAT
CAATGGCAAAATCCACCTTCCTCACTTTATCTCTCATTTCATTGTCTTCC
TCTGTGGCTTAGCCCTCGGCATTGCAATTCCTTCTTGGCATTCCAAATCC
ATTTCTTTAAACTTTCAACTCAACCCATCTTTGAACCAAACGCAGACCCT
TCCAGCTCCACATAAGCTTTTACCTTTGGAAATGCTGCTGCTTAATCGAA
CCAGTAATTCAACCGGTTGGAAAAATTTGTTTAAACCGCCAACCAGTGTC
TATCACGACATGGAAGAAGAAGAGCTGTTATGGAGAGCATCAATGGTTCC
TAATGTTGGAAATTCTACGTTGCCTCGTGCTAAAAAAGTTGCGTTTCTGT
TCTTGACACATGGGCCTTTGCCTTTGGCTCCTTTCTGGGATTTGTTCTTT
AAAGGCTATGAAGATCTTTACTCAGTTTATGTGCATTCGAATCCTTTGTT
TAAAGGCACAGTGCCCTCCAACTCTGTGTTCTATGGCAGGATGATCCCAA
GAAGTAAGGTCAGTCTTTTTCTTTTTCTTTTTTCTTTGAAGTTCCTAATT
TTTATTTCTCTTATTCAGTGTTCTATTTTGATACGTTTCTTCCTTGCAAT
ATAATTATACAGTTACTGTACAAATATACTAATAATTAATGAAAAATTAA
TATAGCCTTAAATCTTAATCATGTGATTTTCAAAAAAAAAATTAATAATT
AAATAATATAAGTGAAACATATATTAAAAAAGACAATAAAAATTGTTAAC
TTTAGCGCCTAATTAATTGTATTTTTTAATTCACATGAAAATAATAATAA
TATATATATATAAATTTTTTTTAAAGATGTATTATGACAAATTGAGCTTT
CATGCAAGGTGGTGCAATGGGGAACGTTTTCAGTAGTAGAAGCAGAGCGT
CTCTTATTAGCAAATGCATTACTTGACGTATCCAACCAACGCTTTGTTCT
CCTTTCAGATTCATGCATTCCTCTGTTCAACTTCTCCACAATCTACAATT
ACTTAATGTCTTCGTCAAAATCTTTCCTAGAGGTTCTTGACGTGCCCGGC
CTAGTCGGCCGTGACCGATACAACCCACGAATGAGTCCTACAATTCAGTT
TCATCAATGGCGAAAAGGCGCCCAGTGGTTCCAGATTGATCGAGATCTTG
CCCATGAGCTAATCTCAGACCTAAATTATTTCTCCACATTTCAAAGATTT
TGCAATGGCTTGTGCTTCGGTGATGAGCATTACTTGCCATCTTTTGTTAC
TGTGAGGCTTTGGAGGAAGTTTTCAAACAGGACTTTGACTTGGATTAATT
GGTCAATGGGTGGGGCCCATCCTTTTGGGTTTGGGGAGATGGAAACCACT
AGGGAGAATTTGGAGTGGTTGAGGAGTTATGGGAATGAAGGATGTGAATT
CAATGGGGGAACTAATATTTGCTTCTTGTTTGCTAGAAAGTTTCTGCCTT
CTTCTTTGGATAGTTTGATGAGGATTGCTCCTCATGTCATGCAATTTTAA
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mRNA from alignment at Chromosome01:2406315..2407864+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G014300.1.v6.1 ID=Manes.01G014300.1.v6.1|Name=Manes.01G014300.1|organism=Manihot esculenta|type=mRNA|length=1550bp|location=Sequence derived from alignment at Chromosome01:2406315..2407864+ (Manihot esculenta)
ATGAAGAACTTCAACAAGAAACTTCGCTCAAGGATCTTATCAACCCTCAT CAATGGCAAAATCCACCTTCCTCACTTTATCTCTCATTTCATTGTCTTCC TCTGTGGCTTAGCCCTCGGCATTGCAATTCCTTCTTGGCATTCCAAATCC ATTTCTTTAAACTTTCAACTCAACCCATCTTTGAACCAAACGCAGACCCT TCCAGCTCCACATAAGCTTTTACCTTTGGAAATGCTGCTGCTTAATCGAA CCAGTAATTCAACCGGTTGGAAAAATTTGTTTAAACCGCCAACCAGTGTC TATCACGACATGGAAGAAGAAGAGCTGTTATGGAGAGCATCAATGGTTCC TAATGTTGGAAATTCTACGTTGCCTCGTGCTAAAAAAGTTGCGTTTCTGT TCTTGACACATGGGCCTTTGCCTTTGGCTCCTTTCTGGGATTTGTTCTTT AAAGGCTATGAAGATCTTTACTCAGTTTATGTGCATTCGAATCCTTTGTT TAAAGGCACAGTGCCCTCCAACTCTGTGTTCTATGGCAGGATGATCCCAA GAAGTAAGGTCAGTCTTTTTCTTTTTCTTTTTTCTTTGAAGTTCCTAATT TTTATTTCTCTTATTCAGTGTTCTATTTTGATACGTTTCTTCCTTGCAAT ATAATTATACAGTTACTGTACAAATATACTAATAATTAATGAAAAATTAA TATAGCCTTAAATCTTAATCATGTGATTTTCAAAAAAAAAATTAATAATT AAATAATATAAGTGAAACATATATTAAAAAAGACAATAAAAATTGTTAAC TTTAGCGCCTAATTAATTGTATTTTTTAATTCACATGAAAATAATAATAA TATATATATATAAATTTTTTTTAAAGATGTATTATGACAAATTGAGCTTT CATGCAAGGTGGTGCAATGGGGAACGTTTTCAGTAGTAGAAGCAGAGCGT CTCTTATTAGCAAATGCATTACTTGACGTATCCAACCAACGCTTTGTTCT CCTTTCAGATTCATGCATTCCTCTGTTCAACTTCTCCACAATCTACAATT ACTTAATGTCTTCGTCAAAATCTTTCCTAGAGGTTCTTGACGTGCCCGGC CTAGTCGGCCGTGACCGATACAACCCACGAATGAGTCCTACAATTCAGTT TCATCAATGGCGAAAAGGCGCCCAGTGGTTCCAGATTGATCGAGATCTTG CCCATGAGCTAATCTCAGACCTAAATTATTTCTCCACATTTCAAAGATTT TGCAATGGCTTGTGCTTCGGTGATGAGCATTACTTGCCATCTTTTGTTAC TGTGAGGCTTTGGAGGAAGTTTTCAAACAGGACTTTGACTTGGATTAATT GGTCAATGGGTGGGGCCCATCCTTTTGGGTTTGGGGAGATGGAAACCACT AGGGAGAATTTGGAGTGGTTGAGGAGTTATGGGAATGAAGGATGTGAATT CAATGGGGGAACTAATATTTGCTTCTTGTTTGCTAGAAAGTTTCTGCCTT CTTCTTTGGATAGTTTGATGAGGATTGCTCCTCATGTCATGCAATTTTAA
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Coding sequence (CDS) from alignment at Chromosome01:2406315..2407864+

>Manes.01G014300.1.v6.1 ID=Manes.01G014300.1.v6.1|Name=Manes.01G014300.1|organism=Manihot esculenta|type=CDS|length=1200bp|location=Sequence derived from alignment at Chromosome01:2406315..2407864+ (Manihot esculenta)
ATGAAGAACTTCAACAAGAAACTTCGCTCAAGGATCTTATCAACCCTCAT
CAATGGCAAAATCCACCTTCCTCACTTTATCTCTCATTTCATTGTCTTCC
TCTGTGGCTTAGCCCTCGGCATTGCAATTCCTTCTTGGCATTCCAAATCC
ATTTCTTTAAACTTTCAACTCAACCCATCTTTGAACCAAACGCAGACCCT
TCCAGCTCCACATAAGCTTTTACCTTTGGAAATGCTGCTGCTTAATCGAA
CCAGTAATTCAACCGGTTGGAAAAATTTGTTTAAACCGCCAACCAGTGTC
TATCACGACATGGAAGAAGAAGAGCTGTTATGGAGAGCATCAATGGTTCC
TAATGTTGGAAATTCTACGTTGCCTCGTGCTAAAAAAGTTGCGTTTCTGT
TCTTGACACATGGGCCTTTGCCTTTGGCTCCTTTCTGGGATTTGTTCTTT
AAAGGCTATGAAGATCTTTACTCAGTTTATGTGCATTCGAATCCTTTGTT
TAAAGGCACAGTGCCCTCCAACTCTGTGTTCTATGGCAGGATGATCCCAA
GAAGTAAGGTGGTGCAATGGGGAACGTTTTCAGTAGTAGAAGCAGAGCGT
CTCTTATTAGCAAATGCATTACTTGACGTATCCAACCAACGCTTTGTTCT
CCTTTCAGATTCATGCATTCCTCTGTTCAACTTCTCCACAATCTACAATT
ACTTAATGTCTTCGTCAAAATCTTTCCTAGAGGTTCTTGACGTGCCCGGC
CTAGTCGGCCGTGACCGATACAACCCACGAATGAGTCCTACAATTCAGTT
TCATCAATGGCGAAAAGGCGCCCAGTGGTTCCAGATTGATCGAGATCTTG
CCCATGAGCTAATCTCAGACCTAAATTATTTCTCCACATTTCAAAGATTT
TGCAATGGCTTGTGCTTCGGTGATGAGCATTACTTGCCATCTTTTGTTAC
TGTGAGGCTTTGGAGGAAGTTTTCAAACAGGACTTTGACTTGGATTAATT
GGTCAATGGGTGGGGCCCATCCTTTTGGGTTTGGGGAGATGGAAACCACT
AGGGAGAATTTGGAGTGGTTGAGGAGTTATGGGAATGAAGGATGTGAATT
CAATGGGGGAACTAATATTTGCTTCTTGTTTGCTAGAAAGTTTCTGCCTT
CTTCTTTGGATAGTTTGATGAGGATTGCTCCTCATGTCATGCAATTTTAA
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