Manes.01G014200.1.v6.1 (mRNA)

Overview
NameManes.01G014200.1
Unique NameManes.01G014200.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length1815
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:2402903..2404717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32357168
Longest1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G014200Manes.01G014200.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G014200.1Manes.01G014200.1.v6.1-proteinManihot esculentapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G014200.1.v6.1.five_prime_UTR.1Manes.01G014200.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G014200.1.v6.1.CDS.1Manes.01G014200.1.v6.1.CDS.1Manihot esculentaCDS
Manes.01G014200.1.v6.1.CDS.2Manes.01G014200.1.v6.1.CDS.2Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G014200.1.v6.1.three_prime_UTR.1Manes.01G014200.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G014200.1.v6.1 ID=Manes.01G014200.1.v6.1|Name=Manes.01G014200.1|organism=Manihot esculenta|type=mRNA|length=1815bp
GACCCATAGCCGTAGTGCTTACTGCTTATCGACCTAAATTTTGGCATAAC
TCATGTTCACAAGTTTGACTTGACCTTTGTTTGTGCATTGCTTAACCAAC
GTTGATTATTCGGTCTGAACCCTCTAGCCCCTATTTTCACTAATCAATTG
TCTGAAACCATGTTCTTCTTCCAAGTCCTACACAAGAACTTTCAAATTCT
GGACCAAGATTGCCATTACACATGCACAAGTGATTTTGTCTTTGTGGGCT
AATTTAGCTTCCATTAATATCCCATTTCTTCAACAAACCTCTTGCTCTGG
CCTTGGAGACAATGAGAAATTGGCACAAAAATTGTCCAATATCAGTTGCC
AATGCCAAGCTTATTAGTTCCTTTTTGCAGTTGGGCTATTTATTTCGTTT
TCTCTTCTTTCTCGTTGGTTTGTCACTTGGCTTCACTGTCTGCGTGTATT
TGAAAAGCATCTCCTTTGATTTCTACGCTACTTTGTTCTCTCTTTCACCA
TCCCCACCAACACAACTGCCGCCGCCTCCTCCTCCTCCTAGTAATATGAG
TAGCTTATTCATATCAAGAACTAAACTTCCTGTTAGTCTTATGCATAATA
TGGAAGATGATGAGTTGTTTTGGCGAGCGTCTATGGTTCCGAGGATTCGG
AGGATTCCTCAAAAACTTGTTCCTAAGTCTAAAGTTGCTTTCATGTTCTT
GACGAAGGGAGCTTTGCCTTTGGCTTCGTTGTGGGAAGAGTTTTTTAAAG
GACATGAAGGGCTTTACAATATATATGTTCATCCTCATCCCTCTTTCAAC
TATACTTTCCCGGAAACCTCTGTTTTCCATGAAAGGAGAATTCCAAGCAA
GGTCAGTTTTTTCTGTGTCTTTCGATTATTTCAACATAAGCAAATCCTAC
ATCCAGAAAAGATTAACAAAAATAAAAAAAATAATAATAAAATTTATTTA
ATTATTTTCAAATTTGTACTAACATATTTGAAATTATTAAAAATAATTAA
AAATTTAAAGTTATGTAGCATATTCGAATCATAAATTTTTTCATTTATTT
ATTTATTTATTTATATTAATTGCAGCCTGTGGAATGGGGAAGAGCATCCA
TGATTGACGCAGAGAGGAGACTTTTAGCGAACGCACTCCTTGACTTATCA
AACGACAGATTTGTACTTATCTCAGAAACATGCATTCCTTTATTCAACTT
CTCAACAACATACAACTACCTCATCAATGCTCGAAAAAGCTTCGTGGGTT
CCTACGACGATCCAAGAAAAGTGGGTCGGGGCCGATACAATCCGAAAATG
TCTCCAACAATCACAATTTCTAACTGGCGTAAAGGGTCTCAGTGGTTTGA
AGTTAATCGCAAGGTGGCCATTGAAATAGTTTCAGACACAACGTATTATC
CAGTTTTTCGACAGCATTGTAGCCCTCCATGTTACGTGGACGAGCATTAT
ATTCCTACACTTGTTAACATTGTTTGTCCAGAGGAAAATAACAACAGGAG
CATTACTTGGGTTGATTGGTCGAAGAGTGGTCCTCATCCTGGAAAATTTG
GGAAGAAATCTGTTTCCGTTGAGTTCTTGGATCGAATTAGGTTTCGTGGT
AATTGTTCTTACAATGGGAATGCTTCCTCTGTCTGCTTCCTGTTTGCTAG
GAAGTTCTTGCCTGATACTTTGGAGATTTTGTTGCAGATTGCACCAGGGC
TGCCACATTTCAATCATTCTTATTCAGCTTCTTCTACCAATGTATAGTAT
TTATTTGAATTTGATTCTAATTGATGTTTGAATTCAAAATTAACTAATTA
ATTTCTTCCAAATTC
back to top

mRNA from alignment at Chromosome01:2402903..2404717+

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G014200.1.v6.1 ID=Manes.01G014200.1.v6.1|Name=Manes.01G014200.1|organism=Manihot esculenta|type=mRNA|length=1815bp|location=Sequence derived from alignment at Chromosome01:2402903..2404717+ (Manihot esculenta)
GACCCATAGCCGTAGTGCTTACTGCTTATCGACCTAAATTTTGGCATAAC TCATGTTCACAAGTTTGACTTGACCTTTGTTTGTGCATTGCTTAACCAAC GTTGATTATTCGGTCTGAACCCTCTAGCCCCTATTTTCACTAATCAATTG TCTGAAACCATGTTCTTCTTCCAAGTCCTACACAAGAACTTTCAAATTCT GGACCAAGATTGCCATTACACATGCACAAGTGATTTTGTCTTTGTGGGCT AATTTAGCTTCCATTAATATCCCATTTCTTCAACAAACCTCTTGCTCTGG CCTTGGAGACAATGAGAAATTGGCACAAAAATTGTCCAATATCAGTTGCC AATGCCAAGCTTATTAGTTCCTTTTTGCAGTTGGGCTATTTATTTCGTTT TCTCTTCTTTCTCGTTGGTTTGTCACTTGGCTTCACTGTCTGCGTGTATT TGAAAAGCATCTCCTTTGATTTCTACGCTACTTTGTTCTCTCTTTCACCA TCCCCACCAACACAACTGCCGCCGCCTCCTCCTCCTCCTAGTAATATGAG TAGCTTATTCATATCAAGAACTAAACTTCCTGTTAGTCTTATGCATAATA TGGAAGATGATGAGTTGTTTTGGCGAGCGTCTATGGTTCCGAGGATTCGG AGGATTCCTCAAAAACTTGTTCCTAAGTCTAAAGTTGCTTTCATGTTCTT GACGAAGGGAGCTTTGCCTTTGGCTTCGTTGTGGGAAGAGTTTTTTAAAG GACATGAAGGGCTTTACAATATATATGTTCATCCTCATCCCTCTTTCAAC TATACTTTCCCGGAAACCTCTGTTTTCCATGAAAGGAGAATTCCAAGCAA GGTCAGTTTTTTCTGTGTCTTTCGATTATTTCAACATAAGCAAATCCTAC ATCCAGAAAAGATTAACAAAAATAAAAAAAATAATAATAAAATTTATTTA ATTATTTTCAAATTTGTACTAACATATTTGAAATTATTAAAAATAATTAA AAATTTAAAGTTATGTAGCATATTCGAATCATAAATTTTTTCATTTATTT ATTTATTTATTTATATTAATTGCAGCCTGTGGAATGGGGAAGAGCATCCA TGATTGACGCAGAGAGGAGACTTTTAGCGAACGCACTCCTTGACTTATCA AACGACAGATTTGTACTTATCTCAGAAACATGCATTCCTTTATTCAACTT CTCAACAACATACAACTACCTCATCAATGCTCGAAAAAGCTTCGTGGGTT CCTACGACGATCCAAGAAAAGTGGGTCGGGGCCGATACAATCCGAAAATG TCTCCAACAATCACAATTTCTAACTGGCGTAAAGGGTCTCAGTGGTTTGA AGTTAATCGCAAGGTGGCCATTGAAATAGTTTCAGACACAACGTATTATC CAGTTTTTCGACAGCATTGTAGCCCTCCATGTTACGTGGACGAGCATTAT ATTCCTACACTTGTTAACATTGTTTGTCCAGAGGAAAATAACAACAGGAG CATTACTTGGGTTGATTGGTCGAAGAGTGGTCCTCATCCTGGAAAATTTG GGAAGAAATCTGTTTCCGTTGAGTTCTTGGATCGAATTAGGTTTCGTGGT AATTGTTCTTACAATGGGAATGCTTCCTCTGTCTGCTTCCTGTTTGCTAG GAAGTTCTTGCCTGATACTTTGGAGATTTTGTTGCAGATTGCACCAGGGC TGCCACATTTCAATCATTCTTATTCAGCTTCTTCTACCAATGTATAGTAT TTATTTGAATTTGATTCTAATTGATGTTTGAATTCAAAATTAACTAATTA ATTTCTTCCAAATTC
back to top

Coding sequence (CDS) from alignment at Chromosome01:2402903..2404717+

>Manes.01G014200.1.v6.1 ID=Manes.01G014200.1.v6.1|Name=Manes.01G014200.1|organism=Manihot esculenta|type=CDS|length=1212bp|location=Sequence derived from alignment at Chromosome01:2402903..2404717+ (Manihot esculenta)
ATGAGAAATTGGCACAAAAATTGTCCAATATCAGTTGCCAATGCCAAGCT
TATTAGTTCCTTTTTGCAGTTGGGCTATTTATTTCGTTTTCTCTTCTTTC
TCGTTGGTTTGTCACTTGGCTTCACTGTCTGCGTGTATTTGAAAAGCATC
TCCTTTGATTTCTACGCTACTTTGTTCTCTCTTTCACCATCCCCACCAAC
ACAACTGCCGCCGCCTCCTCCTCCTCCTAGTAATATGAGTAGCTTATTCA
TATCAAGAACTAAACTTCCTGTTAGTCTTATGCATAATATGGAAGATGAT
GAGTTGTTTTGGCGAGCGTCTATGGTTCCGAGGATTCGGAGGATTCCTCA
AAAACTTGTTCCTAAGTCTAAAGTTGCTTTCATGTTCTTGACGAAGGGAG
CTTTGCCTTTGGCTTCGTTGTGGGAAGAGTTTTTTAAAGGACATGAAGGG
CTTTACAATATATATGTTCATCCTCATCCCTCTTTCAACTATACTTTCCC
GGAAACCTCTGTTTTCCATGAAAGGAGAATTCCAAGCAAGCCTGTGGAAT
GGGGAAGAGCATCCATGATTGACGCAGAGAGGAGACTTTTAGCGAACGCA
CTCCTTGACTTATCAAACGACAGATTTGTACTTATCTCAGAAACATGCAT
TCCTTTATTCAACTTCTCAACAACATACAACTACCTCATCAATGCTCGAA
AAAGCTTCGTGGGTTCCTACGACGATCCAAGAAAAGTGGGTCGGGGCCGA
TACAATCCGAAAATGTCTCCAACAATCACAATTTCTAACTGGCGTAAAGG
GTCTCAGTGGTTTGAAGTTAATCGCAAGGTGGCCATTGAAATAGTTTCAG
ACACAACGTATTATCCAGTTTTTCGACAGCATTGTAGCCCTCCATGTTAC
GTGGACGAGCATTATATTCCTACACTTGTTAACATTGTTTGTCCAGAGGA
AAATAACAACAGGAGCATTACTTGGGTTGATTGGTCGAAGAGTGGTCCTC
ATCCTGGAAAATTTGGGAAGAAATCTGTTTCCGTTGAGTTCTTGGATCGA
ATTAGGTTTCGTGGTAATTGTTCTTACAATGGGAATGCTTCCTCTGTCTG
CTTCCTGTTTGCTAGGAAGTTCTTGCCTGATACTTTGGAGATTTTGTTGC
AGATTGCACCAGGGCTGCCACATTTCAATCATTCTTATTCAGCTTCTTCT
ACCAATGTATAG
back to top