Manes.01G014100.1.v6.1 (mRNA)

Overview
NameManes.01G014100.1
Unique NameManes.01G014100.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length2212
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:2390255..2392466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32360147
Longest1
AncestorIdentifiercassava4.1_009446m.v4.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G014100Manes.01G014100.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G014100.1Manes.01G014100.1.v6.1-proteinManihot esculentapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G014100.1.v6.1.CDS.6Manes.01G014100.1.v6.1.CDS.6Manihot esculentaCDS
Manes.01G014100.1.v6.1.CDS.5Manes.01G014100.1.v6.1.CDS.5Manihot esculentaCDS
Manes.01G014100.1.v6.1.CDS.4Manes.01G014100.1.v6.1.CDS.4Manihot esculentaCDS
Manes.01G014100.1.v6.1.CDS.3Manes.01G014100.1.v6.1.CDS.3Manihot esculentaCDS
Manes.01G014100.1.v6.1.CDS.2Manes.01G014100.1.v6.1.CDS.2Manihot esculentaCDS
Manes.01G014100.1.v6.1.CDS.1Manes.01G014100.1.v6.1.CDS.1Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G014100.1.v6.1.three_prime_UTR.1Manes.01G014100.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G014100.1.v6.1.five_prime_UTR.1Manes.01G014100.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G014100.1.v6.1 ID=Manes.01G014100.1.v6.1|Name=Manes.01G014100.1|organism=Manihot esculenta|type=mRNA|length=2212bp
TTGTACACGTGTCTGTTTTTAATTAGTTATAGGGGCAACTCTCAGTCTCA
AGTAAAACATGGAGAAGAAGAAAAAAAAAAGGCCATCCTTGAATTATTCA
AGCCAGAAGCATGAATTTCGTAGCCGATTCCAAATATTGGTACAAAAAAT
AAAACAGATAACTATCAGTAGAAGCTTGTGGGAAATTAAACTATGTTCAT
CCAGATTTAATTAGCAGTAGAACTATATTGGCCGGCTTCTCATACGAATG
TTGATAGCTCTTGACGCCATAGCTCTCAAGTTTGATCTAGCCATGGAAAG
TGAGCTTCCTGAATGTGCATGGTGTCCTCCTCCAAAAGCCTCCATAAACT
CTTCCCTCTGCAGCCTTAGAGCTAATGCAGCATCCTCATCTTGGCCAGGT
CTAGGCGTCCCTCTTCTTCTCCTTCCACTTGCATCTCTCCTTAATAACCT
TGCAAGATCTTCTCGTGGCAAGCTTTGTGCAGATTCAGCATCCTCATCTT
GGCTCAGTGTCCCTCTTCTGTTCCTTCCACTTGTATCTCTACTCAATAAT
AGTGTAAGATCTTCATCTTGGTTCAGTTCCTCTCTTCCCCTGGAAACTTG
GATCCTGGAAGGGCGAATGCTTGAGCTTCTCACACCAGTATTGGATCTTG
TTTCCAGGGTTTGGTGTTGGGCTTCTCGAGTATTCAAGACCCCAGCCGCT
TTTCTTGCTTCAATTTCTTTTGGAAAAAGAAGCTGTATTGTGTTCCAAAG
AACTGTGTTTACAGTGCAAGATCTTCCATTGCTGAAAATTCACAACATAG
AAGAAAAATATGATAATTATGTAAAACTACATAATTAAGTATCTTACCTA
CTAGAAAAACAAATTAATTTAGTAAAATTCACACCTTATTAGCTGTCTGC
ATTTTGGACATTTCTTTCCACATTTATCAGCAGCAGACCTTAAGCATTTC
TTACAGAAACTGCAAACAAACAAAACCTAACCTCTCAGGACTAAGTAGAT
CAACAAACATGTCCAAAGAATGGAAATTACCCCTGCTTAAATAATAATTA
CAATGTTCAAACAATCACAATATACTAGGGACACACACAGGCACTCACAA
TCGGTGTTAAAGAGAGAAGAAATTTAACATGGTTAGACATTGAGGTCTAC
ATCTTCAAGCAATCAGTGATAAAAAGTTTCAAAAACAGGGATACAAATTT
TTTCGATTCGAGTAGCAATGCAGAACTTTCCGGGAAGCCACATAATTAGC
ATACAACTATGGCTGCTTCATTCTCTTACCAATGAAATCATATAGCCCAG
AGGAAAATTCTGTAGGTAGTACAGAAGGGTTGAACTTTTCGTTTACCTGT
GTCCACAAGTAGTGGTACTAGGTTCAAAGCAAATCTCCAAACAAATCTGC
CAAACATCAAGATCATTAAAAACAATGAAAACCCAGATTGCCTGAATCAA
TTAATATGAAATCTAGAAATCAGTACGAGAGATCGAGCGACTTACTGCAC
AAGAAAGCTCTTCTCTGAGCTTATCCATGCAAGGAAAGACTGAATTCGAG
CAAGAAACAGCAGAATCATCTTTCTTCAATTCATCTCCTTCTGTTTTACG
TTCTTCCTTAGCCACAATTTCTTTTTTTTCCTTCTGATGATTCTCTGCCC
ATCAATATAATAAAAAAGAAATCAATTTTCAAGCCTCTTAGAAAATATCT
CAACAGCCCAATTCTCAATGGTTACCTTGTTTTTCAGGTAACTCTTCTTC
TTCAAGGCTAATAGCGGGGACAGAAATCAAAATTGGACTCTTTCTCTGGG
CTCTGCGTTTTCTATTAAACACAGAAACAGCTAATTTCAATTTTCAAGAA
AATCATTTTGTTATCGTTGAACAAAGATGGTGAATGTGTTACCTTCTTGA
ACTGGCGGATGGTGGAGTTTTGAAGTGCAAATCAGAGCGTTTCTTGTGCT
TAAACTGTCGATCAGGAGTGTCTTCTACTATAAGGCTGGCAATAAGGATG
GATTCCTCATCCCAACCAGCCATGGCAGCCAAAGATTTAAATCTTGGACT
GAACAAACCCTCAACGTTTTGGCCAGTTTCAACAGGGTCTGATTGCCTTT
GCTCCGATGGACTCTGTTTCGGTTCATCGCTCACCATTGCTATCTCGGAG
GAGGGATTCTTTCCGGGTTGTTGTTTGGGAAGAGTAGAAGGGAAAAATCT
CCTTTGATCGAA
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mRNA from alignment at Chromosome01:2390255..2392466-

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G014100.1.v6.1 ID=Manes.01G014100.1.v6.1|Name=Manes.01G014100.1|organism=Manihot esculenta|type=mRNA|length=2212bp|location=Sequence derived from alignment at Chromosome01:2390255..2392466- (Manihot esculenta)
TTCGATCAAAGGAGATTTTTCCCTTCTACTCTTCCCAAACAACAACCCGG AAAGAATCCCTCCTCCGAGATAGCAATGGTGAGCGATGAACCGAAACAGA GTCCATCGGAGCAAAGGCAATCAGACCCTGTTGAAACTGGCCAAAACGTT GAGGGTTTGTTCAGTCCAAGATTTAAATCTTTGGCTGCCATGGCTGGTTG GGATGAGGAATCCATCCTTATTGCCAGCCTTATAGTAGAAGACACTCCTG ATCGACAGTTTAAGCACAAGAAACGCTCTGATTTGCACTTCAAAACTCCA CCATCCGCCAGTTCAAGAAGGTAACACATTCACCATCTTTGTTCAACGAT AACAAAATGATTTTCTTGAAAATTGAAATTAGCTGTTTCTGTGTTTAATA GAAAACGCAGAGCCCAGAGAAAGAGTCCAATTTTGATTTCTGTCCCCGCT ATTAGCCTTGAAGAAGAAGAGTTACCTGAAAAACAAGGTAACCATTGAGA ATTGGGCTGTTGAGATATTTTCTAAGAGGCTTGAAAATTGATTTCTTTTT TATTATATTGATGGGCAGAGAATCATCAGAAGGAAAAAAAAGAAATTGTG GCTAAGGAAGAACGTAAAACAGAAGGAGATGAATTGAAGAAAGATGATTC TGCTGTTTCTTGCTCGAATTCAGTCTTTCCTTGCATGGATAAGCTCAGAG AAGAGCTTTCTTGTGCAGTAAGTCGCTCGATCTCTCGTACTGATTTCTAG ATTTCATATTAATTGATTCAGGCAATCTGGGTTTTCATTGTTTTTAATGA TCTTGATGTTTGGCAGATTTGTTTGGAGATTTGCTTTGAACCTAGTACCA CTACTTGTGGACACAGGTAAACGAAAAGTTCAACCCTTCTGTACTACCTA CAGAATTTTCCTCTGGGCTATATGATTTCATTGGTAAGAGAATGAAGCAG CCATAGTTGTATGCTAATTATGTGGCTTCCCGGAAAGTTCTGCATTGCTA CTCGAATCGAAAAAATTTGTATCCCTGTTTTTGAAACTTTTTATCACTGA TTGCTTGAAGATGTAGACCTCAATGTCTAACCATGTTAAATTTCTTCTCT CTTTAACACCGATTGTGAGTGCCTGTGTGTGTCCCTAGTATATTGTGATT GTTTGAACATTGTAATTATTATTTAAGCAGGGGTAATTTCCATTCTTTGG ACATGTTTGTTGATCTACTTAGTCCTGAGAGGTTAGGTTTTGTTTGTTTG CAGTTTCTGTAAGAAATGCTTAAGGTCTGCTGCTGATAAATGTGGAAAGA AATGTCCAAAATGCAGACAGCTAATAAGGTGTGAATTTTACTAAATTAAT TTGTTTTTCTAGTAGGTAAGATACTTAATTATGTAGTTTTACATAATTAT CATATTTTTCTTCTATGTTGTGAATTTTCAGCAATGGAAGATCTTGCACT GTAAACACAGTTCTTTGGAACACAATACAGCTTCTTTTTCCAAAAGAAAT TGAAGCAAGAAAAGCGGCTGGGGTCTTGAATACTCGAGAAGCCCAACACC AAACCCTGGAAACAAGATCCAATACTGGTGTGAGAAGCTCAAGCATTCGC CCTTCCAGGATCCAAGTTTCCAGGGGAAGAGAGGAACTGAACCAAGATGA AGATCTTACACTATTATTGAGTAGAGATACAAGTGGAAGGAACAGAAGAG GGACACTGAGCCAAGATGAGGATGCTGAATCTGCACAAAGCTTGCCACGA GAAGATCTTGCAAGGTTATTAAGGAGAGATGCAAGTGGAAGGAGAAGAAG AGGGACGCCTAGACCTGGCCAAGATGAGGATGCTGCATTAGCTCTAAGGC TGCAGAGGGAAGAGTTTATGGAGGCTTTTGGAGGAGGACACCATGCACAT TCAGGAAGCTCACTTTCCATGGCTAGATCAAACTTGAGAGCTATGGCGTC AAGAGCTATCAACATTCGTATGAGAAGCCGGCCAATATAGTTCTACTGCT AATTAAATCTGGATGAACATAGTTTAATTTCCCACAAGCTTCTACTGATA GTTATCTGTTTTATTTTTTGTACCAATATTTGGAATCGGCTACGAAATTC ATGCTTCTGGCTTGAATAATTCAAGGATGGCCTTTTTTTTTTCTTCTTCT CCATGTTTTACTTGAGACTGAGAGTTGCCCCTATAACTAATTAAAAACAG ACACGTGTACAA
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Coding sequence (CDS) from alignment at Chromosome01:2390255..2392466-

>Manes.01G014100.1.v6.1 ID=Manes.01G014100.1.v6.1|Name=Manes.01G014100.1|organism=Manihot esculenta|type=CDS|length=1164bp|location=Sequence derived from alignment at Chromosome01:2390255..2392466- (Manihot esculenta)
ATGGTGAGCGATGAACCGAAACAGAGTCCATCGGAGCAAAGGCAATCAGA
CCCTGTTGAAACTGGCCAAAACGTTGAGGGTTTGTTCAGTCCAAGATTTA
AATCTTTGGCTGCCATGGCTGGTTGGGATGAGGAATCCATCCTTATTGCC
AGCCTTATAGTAGAAGACACTCCTGATCGACAGTTTAAGCACAAGAAACG
CTCTGATTTGCACTTCAAAACTCCACCATCCGCCAGTTCAAGAAGAAAAC
GCAGAGCCCAGAGAAAGAGTCCAATTTTGATTTCTGTCCCCGCTATTAGC
CTTGAAGAAGAAGAGTTACCTGAAAAACAAGAGAATCATCAGAAGGAAAA
AAAAGAAATTGTGGCTAAGGAAGAACGTAAAACAGAAGGAGATGAATTGA
AGAAAGATGATTCTGCTGTTTCTTGCTCGAATTCAGTCTTTCCTTGCATG
GATAAGCTCAGAGAAGAGCTTTCTTGTGCAATTTGTTTGGAGATTTGCTT
TGAACCTAGTACCACTACTTGTGGACACAGTTTCTGTAAGAAATGCTTAA
GGTCTGCTGCTGATAAATGTGGAAAGAAATGTCCAAAATGCAGACAGCTA
ATAAGCAATGGAAGATCTTGCACTGTAAACACAGTTCTTTGGAACACAAT
ACAGCTTCTTTTTCCAAAAGAAATTGAAGCAAGAAAAGCGGCTGGGGTCT
TGAATACTCGAGAAGCCCAACACCAAACCCTGGAAACAAGATCCAATACT
GGTGTGAGAAGCTCAAGCATTCGCCCTTCCAGGATCCAAGTTTCCAGGGG
AAGAGAGGAACTGAACCAAGATGAAGATCTTACACTATTATTGAGTAGAG
ATACAAGTGGAAGGAACAGAAGAGGGACACTGAGCCAAGATGAGGATGCT
GAATCTGCACAAAGCTTGCCACGAGAAGATCTTGCAAGGTTATTAAGGAG
AGATGCAAGTGGAAGGAGAAGAAGAGGGACGCCTAGACCTGGCCAAGATG
AGGATGCTGCATTAGCTCTAAGGCTGCAGAGGGAAGAGTTTATGGAGGCT
TTTGGAGGAGGACACCATGCACATTCAGGAAGCTCACTTTCCATGGCTAG
ATCAAACTTGAGAGCTATGGCGTCAAGAGCTATCAACATTCGTATGAGAA
GCCGGCCAATATAG
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