Manes.01G014000.1.v6.1 (mRNA)

Overview


Name	Manes.01G014000.1
Unique Name	Manes.01G014000.1.v6.1
Type	mRNA
Organism	Manihot esculenta (Cassava)
Sequence length	947

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chromosome01	chromosome	Chromosome01:2388611..2389557 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)	2015-07-22

Properties


Property Name	Value
Pacid	32359022
Longest	1
AncestorIdentifier	cassava4.1_029255m.v4.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Manes.01G014000	Manes.01G014000.v6.1	Manihot esculenta	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G014000.1	Manes.01G014000.1.v6.1-protein	Manihot esculenta	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G014000.1.v6.1.CDS.2	Manes.01G014000.1.v6.1.CDS.2	Manihot esculenta	CDS
Manes.01G014000.1.v6.1.CDS.1	Manes.01G014000.1.v6.1.CDS.1	Manihot esculenta	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA from alignment at Chromosome01:2388611..2389557-
coding sequnece from alignment at Chromosome01:2388611..2389557-

mRNA sequence

>Manes.01G014000.1.v6.1 ID=Manes.01G014000.1.v6.1|Name=Manes.01G014000.1|organism=Manihot esculenta|type=mRNA|length=947bp
TCATGACTCAGGAACTTCAGGAACCTTGTATGAATCTGGTGTAACTTCTG
CTAGCCACAATCCTGGAAAAATTGACTGCAAATAAACAAAAAACAAATAT
AAACATATATAAATCAAAAGCTAGGAAGAGGAAAACAAAATTGAAATACG
AATGGAGACTACAAATTTCCTTTAAGTTGCTAAGAGAACAAGAAAAAGCA
AAGAAAATTTTGAATACTTCCGCCGTTTAATTCTTCCTCTCAGCCAGGAA
AACTGAATTGGATTAATCAGTTCACAATAGCAAAACTTCCAACTATCAAA
TTCCAGAAGTCGTCTACTTTTCCCACGTTTTCCTAGAAAATATACCAAAA
ACATAAAAATTAAAGCACAAAAATGCTTACGTCCAAATACTTCTGCACCA
TTCGAGGTCTCTTCTTGGGCCTTCTGGGTGGCCTAATCCTAGCAATCTCC
ATGAAATCTTGCTCAATCTCCTCCTTTGAAAGAGGAACCGAAAACTTGAT
TCTCTCCTTCTGGGGTTCCATACTCTGCCTCTTAACCAGCGAATCAATCT
CCAAAGCTTTTCTCGGTGGATCAATATTCAACTTATCTTCAATCCGCAGT
GGCGCCTTGCATGCCGCTCTTCTGGTCCTCAAATTCCAAGGCCTCGTAGA
ATCATCATTACCTCTCTCTTCTTCAATAAGAGGAGAGACCTTCAATCTCT
TGGCACCTCCATTGAATCTAAGATCAGGAGAAATGGGATTTTCTTGGATT
ATGATTGGTTTGTGATTGCTGGGGGTCTCAAGGCTGGTGGGTTGGGATTG
AAATCCATTAGGAATAGAAGAAGAAGATCGATGATGAGGATCATCAGTGA
GTTTGACACATCTAAGAACTCTTTGGTGACCCCATTTCAAGCAAGGCAAT
GAGAAGTTGTGTAGTGGCTTTGATCGATCTTGCGGTGGCATTGCCAT

mRNA from alignment at Chromosome01:2388611..2389557-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Manes.01G014000.1.v6.1 ID=Manes.01G014000.1.v6.1|Name=Manes.01G014000.1|organism=Manihot esculenta|type=mRNA|length=947bp|location=Sequence derived from alignment at Chromosome01:2388611..2389557- (Manihot esculenta)
ATGGCAATGCCACCGCAAGATCGATCAAAGCCACTACACAACTTCTCATT
GCCTTGCTTGAAATGGGGTCACCAAAGAGTTCTTAGATGTGTCAAACTCA
CTGATGATCCTCATCATCGATCTTCTTCTTCTATTCCTAATGGATTTCAA
TCCCAACCCACCAGCCTTGAGACCCCCAGCAATCACAAACCAATCATAAT
CCAAGAAAATCCCATTTCTCCTGATCTTAGATTCAATGGAGGTGCCAAGA
GATTGAAGGTCTCTCCTCTTATTGAAGAAGAGAGAGGTAATGATGATTCT
ACGAGGCCTTGGAATTTGAGGACCAGAAGAGCGGCATGCAAGGCGCCACT
GCGGATTGAAGATAAGTTGAATATTGATCCACCGAGAAAAGCTTTGGAGA
TTGATTCGCTGGTTAAGAGGCAGAGTATGGAACCCCAGAAGGAGAGAATC
AAGTTTTCGGTTCCTCTTTCAAAGGAGGAGATTGAGCAAGATTTCATGGA
GATTGCTAGGATTAGGCCACCCAGAAGGCCCAAGAAGAGACCTCGAATGG
TGCAGAAGTATTTGGACGTAAGCATTTTTGTGCTTTAATTTTTATGTTTT
TGGTATATTTTCTAGGAAAACGTGGGAAAAGTAGACGACTTCTGGAATTT
GATAGTTGGAAGTTTTGCTATTGTGAACTGATTAATCCAATTCAGTTTTC
CTGGCTGAGAGGAAGAATTAAACGGCGGAAGTATTCAAAATTTTCTTTGC
TTTTTCTTGTTCTCTTAGCAACTTAAAGGAAATTTGTAGTCTCCATTCGT
ATTTCAATTTTGTTTTCCTCTTCCTAGCTTTTGATTTATATATGTTTATA
TTTGTTTTTTGTTTATTTGCAGTCAATTTTTCCAGGATTGTGGCTAGCAG
AAGTTACACCAGATTCATACAAGGTTCCTGAAGTTCCTGAGTCATGA

Coding sequence (CDS) from alignment at Chromosome01:2388611..2389557-

>Manes.01G014000.1.v6.1 ID=Manes.01G014000.1.v6.1|Name=Manes.01G014000.1|organism=Manihot esculenta|type=CDS|length=642bp|location=Sequence derived from alignment at Chromosome01:2388611..2389557- (Manihot esculenta)
ATGGCAATGCCACCGCAAGATCGATCAAAGCCACTACACAACTTCTCATT
GCCTTGCTTGAAATGGGGTCACCAAAGAGTTCTTAGATGTGTCAAACTCA
CTGATGATCCTCATCATCGATCTTCTTCTTCTATTCCTAATGGATTTCAA
TCCCAACCCACCAGCCTTGAGACCCCCAGCAATCACAAACCAATCATAAT
CCAAGAAAATCCCATTTCTCCTGATCTTAGATTCAATGGAGGTGCCAAGA
GATTGAAGGTCTCTCCTCTTATTGAAGAAGAGAGAGGTAATGATGATTCT
ACGAGGCCTTGGAATTTGAGGACCAGAAGAGCGGCATGCAAGGCGCCACT
GCGGATTGAAGATAAGTTGAATATTGATCCACCGAGAAAAGCTTTGGAGA
TTGATTCGCTGGTTAAGAGGCAGAGTATGGAACCCCAGAAGGAGAGAATC
AAGTTTTCGGTTCCTCTTTCAAAGGAGGAGATTGAGCAAGATTTCATGGA
GATTGCTAGGATTAGGCCACCCAGAAGGCCCAAGAAGAGACCTCGAATGG
TGCAGAAGTATTTGGACTCAATTTTTCCAGGATTGTGGCTAGCAGAAGTT
ACACCAGATTCATACAAGGTTCCTGAAGTTCCTGAGTCATGA