Manes.01G013800.1.v6.1 (mRNA)

Overview
NameManes.01G013800.1
Unique NameManes.01G013800.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length1125
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:2365192..2366316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32358137
Longest1
AncestorIdentifiercassava4.1_014833m.v4.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G013800Manes.01G013800.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G013800.1Manes.01G013800.1.v6.1-proteinManihot esculentapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G013800.1.v6.1.five_prime_UTR.1Manes.01G013800.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G013800.1.v6.1.CDS.1Manes.01G013800.1.v6.1.CDS.1Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G013800.1.v6.1.three_prime_UTR.1Manes.01G013800.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G013800.1.v6.1 ID=Manes.01G013800.1.v6.1|Name=Manes.01G013800.1|organism=Manihot esculenta|type=mRNA|length=1125bp
CTCTCTCTCTCTGATCTTGAATTTTCTCTGCTTCATTGGTCCTCACTATA
TATTTATATTAAATTCCTTCAAATCTCAGAATTTTCTCTTCTCTTTTTTT
GACTTTCTAGTCTAAGCAAACTTTCCCTCACAATTTTCTCAGCCCATCAT
CTTTGAACCCTTTACTTTAATAAATCCACACCCTTGAATCCTCTCTCAGT
CCGAATTATTTTCTCAGATGATACCCTTTCCTTTGTTTTGCCGGTGAGAG
TCAGAAACAGTGATTACTATGTTCTCAGAAACAAGCCCTCGAATATCGTT
TTCCAATGATCTTCACCAACAAGATGATATTCAAATCGTGCAGGAGCCTC
GGAGGGACACCACACTTCTTGAATCAAATCCTGATTTTGAGTTCAGCATT
TGCAGAAGCTTAGTAGACGATGAATCTTCTCTGGCAGATGAGCTTTTTGC
AGATGGAATGATCCTTCCAGGCCAAGTGCATGAAAGAAACAGCGCTGCTT
TTAAACAAATTCACAGACATGAACATTCAAGAAAAGCTTCTCTTCCTCCT
CTTCCATGTCCTCCTTCTAGTGATGATCATGAGAATTCAAACAAAGAGAT
GATGGAGATAAATTTGTTAAAGCCACAGTCCAAGTCTTTCTGGGGATTCA
AGAGAAGCACCAGCCTGAATTGTGATTTAAAGAAGAGTCTAATTTGTTCA
TTGCCACTCCTGTCACGAAGCAACTCGACAGGATCATCTGTGCCAAATCC
AAAGCGATCAAATTCACAGAAGCAGCAGCAATCAAATTCCGTGCAGGCAA
AGAAGTTATCAGCAACATCACATGCTTCCACTTATGTGTATAAATTTCCA
CAGAAACCTCCATTGAAGAAGAACTATGGTGGAGCTTATCATGGAAATGG
TGTTAAGATTAGTCCTGTGTTGAATTTGCCACCTCCTTACATTGCTAAAG
GAGCTGCAAATCTCTTTGGTTTGGGATCTTTCTTGAAAGAAAAGAACAGA
AAGTGATTGTTAAATTAATTACATAATCTTGTTGTTAGCTTTTATGAGTT
TTGTCATCCATTGCTAATCTTGGAAGCCATTAGTGATTTAGGGAAATGGA
AAACTCATTAAGTTAGTAACTTCGT
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mRNA from alignment at Chromosome01:2365192..2366316+

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G013800.1.v6.1 ID=Manes.01G013800.1.v6.1|Name=Manes.01G013800.1|organism=Manihot esculenta|type=mRNA|length=1125bp|location=Sequence derived from alignment at Chromosome01:2365192..2366316+ (Manihot esculenta)
CTCTCTCTCTCTGATCTTGAATTTTCTCTGCTTCATTGGTCCTCACTATA TATTTATATTAAATTCCTTCAAATCTCAGAATTTTCTCTTCTCTTTTTTT GACTTTCTAGTCTAAGCAAACTTTCCCTCACAATTTTCTCAGCCCATCAT CTTTGAACCCTTTACTTTAATAAATCCACACCCTTGAATCCTCTCTCAGT CCGAATTATTTTCTCAGATGATACCCTTTCCTTTGTTTTGCCGGTGAGAG TCAGAAACAGTGATTACTATGTTCTCAGAAACAAGCCCTCGAATATCGTT TTCCAATGATCTTCACCAACAAGATGATATTCAAATCGTGCAGGAGCCTC GGAGGGACACCACACTTCTTGAATCAAATCCTGATTTTGAGTTCAGCATT TGCAGAAGCTTAGTAGACGATGAATCTTCTCTGGCAGATGAGCTTTTTGC AGATGGAATGATCCTTCCAGGCCAAGTGCATGAAAGAAACAGCGCTGCTT TTAAACAAATTCACAGACATGAACATTCAAGAAAAGCTTCTCTTCCTCCT CTTCCATGTCCTCCTTCTAGTGATGATCATGAGAATTCAAACAAAGAGAT GATGGAGATAAATTTGTTAAAGCCACAGTCCAAGTCTTTCTGGGGATTCA AGAGAAGCACCAGCCTGAATTGTGATTTAAAGAAGAGTCTAATTTGTTCA TTGCCACTCCTGTCACGAAGCAACTCGACAGGATCATCTGTGCCAAATCC AAAGCGATCAAATTCACAGAAGCAGCAGCAATCAAATTCCGTGCAGGCAA AGAAGTTATCAGCAACATCACATGCTTCCACTTATGTGTATAAATTTCCA CAGAAACCTCCATTGAAGAAGAACTATGGTGGAGCTTATCATGGAAATGG TGTTAAGATTAGTCCTGTGTTGAATTTGCCACCTCCTTACATTGCTAAAG GAGCTGCAAATCTCTTTGGTTTGGGATCTTTCTTGAAAGAAAAGAACAGA AAGTGATTGTTAAATTAATTACATAATCTTGTTGTTAGCTTTTATGAGTT TTGTCATCCATTGCTAATCTTGGAAGCCATTAGTGATTTAGGGAAATGGA AAACTCATTAAGTTAGTAACTTCGT
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Coding sequence (CDS) from alignment at Chromosome01:2365192..2366316+

>Manes.01G013800.1.v6.1 ID=Manes.01G013800.1.v6.1|Name=Manes.01G013800.1|organism=Manihot esculenta|type=CDS|length=738bp|location=Sequence derived from alignment at Chromosome01:2365192..2366316+ (Manihot esculenta)
ATGTTCTCAGAAACAAGCCCTCGAATATCGTTTTCCAATGATCTTCACCA
ACAAGATGATATTCAAATCGTGCAGGAGCCTCGGAGGGACACCACACTTC
TTGAATCAAATCCTGATTTTGAGTTCAGCATTTGCAGAAGCTTAGTAGAC
GATGAATCTTCTCTGGCAGATGAGCTTTTTGCAGATGGAATGATCCTTCC
AGGCCAAGTGCATGAAAGAAACAGCGCTGCTTTTAAACAAATTCACAGAC
ATGAACATTCAAGAAAAGCTTCTCTTCCTCCTCTTCCATGTCCTCCTTCT
AGTGATGATCATGAGAATTCAAACAAAGAGATGATGGAGATAAATTTGTT
AAAGCCACAGTCCAAGTCTTTCTGGGGATTCAAGAGAAGCACCAGCCTGA
ATTGTGATTTAAAGAAGAGTCTAATTTGTTCATTGCCACTCCTGTCACGA
AGCAACTCGACAGGATCATCTGTGCCAAATCCAAAGCGATCAAATTCACA
GAAGCAGCAGCAATCAAATTCCGTGCAGGCAAAGAAGTTATCAGCAACAT
CACATGCTTCCACTTATGTGTATAAATTTCCACAGAAACCTCCATTGAAG
AAGAACTATGGTGGAGCTTATCATGGAAATGGTGTTAAGATTAGTCCTGT
GTTGAATTTGCCACCTCCTTACATTGCTAAAGGAGCTGCAAATCTCTTTG
GTTTGGGATCTTTCTTGAAAGAAAAGAACAGAAAGTGA
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