Manes.01G013700.1.v6.1 (mRNA)

Overview
NameManes.01G013700.1
Unique NameManes.01G013700.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length1891
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:2292475..2294365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32358848
Longest1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G013700Manes.01G013700.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G013700.1Manes.01G013700.1.v6.1-proteinManihot esculentapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G013700.1.v6.1.five_prime_UTR.1Manes.01G013700.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G013700.1.v6.1.CDS.1Manes.01G013700.1.v6.1.CDS.1Manihot esculentaCDS
Manes.01G013700.1.v6.1.CDS.2Manes.01G013700.1.v6.1.CDS.2Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G013700.1.v6.1.three_prime_UTR.1Manes.01G013700.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G013700.1.v6.1 ID=Manes.01G013700.1.v6.1|Name=Manes.01G013700.1|organism=Manihot esculenta|type=mRNA|length=1891bp
GAGGAATAGGTATCCATTTGTCCATTACTCATATCTTAACCAATGAATCA
GTTTTGATTTTCCTCTCAGCCACCATTTGATTATTCACAGCCATTACTTG
AGCCGCTGGTAATGTCTCCTTCCCTCTTAGCCATACTAGTTGTTTTGCTA
GTATTATTCATTTTCAATTTAAGCGCCACCGCATTCCGGTCCCGGAGACA
TCCAAAAAATGACCGGAAGCGACCTCCGGGACCCCCAGCCTTACCAATTA
TCGGTAATCTCTACATGTTGGGCAGCCTCCCCCATCGATCTCTTTACCGT
TTGTCCAAAAAGTATGGCCCTATCATGTCCATGAGACTAGGCTCAATACC
AGCAATTGTTGTATCATCTCCTCAAGCTGCTGAGTTATTTCTCAAGGCAC
ACGACGTTGTATTCGCTAGCCGTCCTATAATACAAGCTTCCGTGTACATG
GCCTATGGCAACAAGGGAATGGCTTTTTCAGAGTATGGCCCTTACTGGCG
TAGCATAAGGAAATTGTGCACGTTACAACTTCTTTCTCCGTCAAAAATTG
AGTACTTTGCTCCGATGAGGATGGAGGAGGTGCGGTTGTTGGTTAATTCG
CTAAAGCAAGCTGCGGCGGCGCGTGTGGCGGTGGATATCAGTTTAGGCGT
GGGAGATCTGATTCGGAACATGAGTTGCAAGTTGGTCTTTGGGGAAGCTA
ACATTTATGAATTTGATCTAAAGCTGTTGATTGAGGAAGCTTTGAACTTG
ACAGGAGCTTTCAATATTGCTGATTATGTTCCTTTTTTAGGAGCATTTGA
TCTTCAGGTATTTGTTTTTCTTTTCTTTTCTTTTTTCTTAACTAATGAGA
TTTCAATATTGCTGATTAACTTGTGAGATCTCAAATTTAAATTCTACTAA
GTATTAATTTTTTAATTCAAATATTTGCATATAGGGATTGAAACAACGTA
TGAAGGCATATAGCAACAAAATGGACAAAATCTTAGAGAAGATAATAGAT
GAACATGAAAGGGAAGCTCAATGGCAAAAGCAACAGCAAATAAGAGATTT
TGTTGATGTGTTGCTTTCTTTGATGAACCAACCCATCGCATCCAATGATG
AATCACTCTCCACACTGGATAGAACCAACATAAAAGCTATTTTACAAGAC
ATGATCATAGGTTCATTTGACACATCAGCCATTACCATTGAGTGGACACT
CACAGAACTCCTCAGACATCCTTCTGCAATGAAACGCCTGCAAGATGAAT
TGCAGAGTGTTGTTGGATTGGATAAAATGGTGCAGGAAAAAGATCTCTCC
AATCTTCCATATCTAGATATGGTTATAAAAGAAAGCTTGAGGTTACATCC
TGTTGGGCCACTTCTAATTCCTCGAAGCTGTATGGAGGAGATAATAATTG
ATGGGTATCATATACCGAAGAAGGCAAGAATTATAGTGAATGCTTGGGGA
ATTGGACGAGATCCTGATGTTTGGTCAGATAATGCAGAAGAGTTTTTGCC
AGAAAGATTTGCTGCGAAAAGTATAGACATTCGAGGACGTGATTTTGAGT
TTCTCCCATTTGGTTCTGGGCGTAGAGGTTGCCCTGGAATGCAACTCGGA
TTAACTGTTGTTAGGCTTGTTATAGCTCAGCTAGTGCATTGCTTCAACTG
GGAGCTCCCAGATGGTGTGCTGCCTGGTGAATTGGACATGAGTGAGGTAT
TTGGCCTGTCGATGCCAAGAGCTAGCCATTTGGTCGTGGTGCCAAAGTAT
CGACTGGGTGTCTGAAGTGCTTTGGAAGTAGCCAAATCAATGTATGCTTC
CTAGTTTAATTATTAAATTCTAAGGTGAATTTCCTTCACTCCATCAACCA
TGATATAGAGATAGATAAGGGTTTTAAATTAATTTAAATTT
back to top

mRNA from alignment at Chromosome01:2292475..2294365+

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G013700.1.v6.1 ID=Manes.01G013700.1.v6.1|Name=Manes.01G013700.1|organism=Manihot esculenta|type=mRNA|length=1891bp|location=Sequence derived from alignment at Chromosome01:2292475..2294365+ (Manihot esculenta)
GAGGAATAGGTATCCATTTGTCCATTACTCATATCTTAACCAATGAATCA GTTTTGATTTTCCTCTCAGCCACCATTTGATTATTCACAGCCATTACTTG AGCCGCTGGTAATGTCTCCTTCCCTCTTAGCCATACTAGTTGTTTTGCTA GTATTATTCATTTTCAATTTAAGCGCCACCGCATTCCGGTCCCGGAGACA TCCAAAAAATGACCGGAAGCGACCTCCGGGACCCCCAGCCTTACCAATTA TCGGTAATCTCTACATGTTGGGCAGCCTCCCCCATCGATCTCTTTACCGT TTGTCCAAAAAGTATGGCCCTATCATGTCCATGAGACTAGGCTCAATACC AGCAATTGTTGTATCATCTCCTCAAGCTGCTGAGTTATTTCTCAAGGCAC ACGACGTTGTATTCGCTAGCCGTCCTATAATACAAGCTTCCGTGTACATG GCCTATGGCAACAAGGGAATGGCTTTTTCAGAGTATGGCCCTTACTGGCG TAGCATAAGGAAATTGTGCACGTTACAACTTCTTTCTCCGTCAAAAATTG AGTACTTTGCTCCGATGAGGATGGAGGAGGTGCGGTTGTTGGTTAATTCG CTAAAGCAAGCTGCGGCGGCGCGTGTGGCGGTGGATATCAGTTTAGGCGT GGGAGATCTGATTCGGAACATGAGTTGCAAGTTGGTCTTTGGGGAAGCTA ACATTTATGAATTTGATCTAAAGCTGTTGATTGAGGAAGCTTTGAACTTG ACAGGAGCTTTCAATATTGCTGATTATGTTCCTTTTTTAGGAGCATTTGA TCTTCAGGTATTTGTTTTTCTTTTCTTTTCTTTTTTCTTAACTAATGAGA TTTCAATATTGCTGATTAACTTGTGAGATCTCAAATTTAAATTCTACTAA GTATTAATTTTTTAATTCAAATATTTGCATATAGGGATTGAAACAACGTA TGAAGGCATATAGCAACAAAATGGACAAAATCTTAGAGAAGATAATAGAT GAACATGAAAGGGAAGCTCAATGGCAAAAGCAACAGCAAATAAGAGATTT TGTTGATGTGTTGCTTTCTTTGATGAACCAACCCATCGCATCCAATGATG AATCACTCTCCACACTGGATAGAACCAACATAAAAGCTATTTTACAAGAC ATGATCATAGGTTCATTTGACACATCAGCCATTACCATTGAGTGGACACT CACAGAACTCCTCAGACATCCTTCTGCAATGAAACGCCTGCAAGATGAAT TGCAGAGTGTTGTTGGATTGGATAAAATGGTGCAGGAAAAAGATCTCTCC AATCTTCCATATCTAGATATGGTTATAAAAGAAAGCTTGAGGTTACATCC TGTTGGGCCACTTCTAATTCCTCGAAGCTGTATGGAGGAGATAATAATTG ATGGGTATCATATACCGAAGAAGGCAAGAATTATAGTGAATGCTTGGGGA ATTGGACGAGATCCTGATGTTTGGTCAGATAATGCAGAAGAGTTTTTGCC AGAAAGATTTGCTGCGAAAAGTATAGACATTCGAGGACGTGATTTTGAGT TTCTCCCATTTGGTTCTGGGCGTAGAGGTTGCCCTGGAATGCAACTCGGA TTAACTGTTGTTAGGCTTGTTATAGCTCAGCTAGTGCATTGCTTCAACTG GGAGCTCCCAGATGGTGTGCTGCCTGGTGAATTGGACATGAGTGAGGTAT TTGGCCTGTCGATGCCAAGAGCTAGCCATTTGGTCGTGGTGCCAAAGTAT CGACTGGGTGTCTGAAGTGCTTTGGAAGTAGCCAAATCAATGTATGCTTC CTAGTTTAATTATTAAATTCTAAGGTGAATTTCCTTCACTCCATCAACCA TGATATAGAGATAGATAAGGGTTTTAAATTAATTTAAATTT
back to top

Coding sequence (CDS) from alignment at Chromosome01:2292475..2294365+

>Manes.01G013700.1.v6.1 ID=Manes.01G013700.1.v6.1|Name=Manes.01G013700.1|organism=Manihot esculenta|type=CDS|length=1527bp|location=Sequence derived from alignment at Chromosome01:2292475..2294365+ (Manihot esculenta)
ATGTCTCCTTCCCTCTTAGCCATACTAGTTGTTTTGCTAGTATTATTCAT
TTTCAATTTAAGCGCCACCGCATTCCGGTCCCGGAGACATCCAAAAAATG
ACCGGAAGCGACCTCCGGGACCCCCAGCCTTACCAATTATCGGTAATCTC
TACATGTTGGGCAGCCTCCCCCATCGATCTCTTTACCGTTTGTCCAAAAA
GTATGGCCCTATCATGTCCATGAGACTAGGCTCAATACCAGCAATTGTTG
TATCATCTCCTCAAGCTGCTGAGTTATTTCTCAAGGCACACGACGTTGTA
TTCGCTAGCCGTCCTATAATACAAGCTTCCGTGTACATGGCCTATGGCAA
CAAGGGAATGGCTTTTTCAGAGTATGGCCCTTACTGGCGTAGCATAAGGA
AATTGTGCACGTTACAACTTCTTTCTCCGTCAAAAATTGAGTACTTTGCT
CCGATGAGGATGGAGGAGGTGCGGTTGTTGGTTAATTCGCTAAAGCAAGC
TGCGGCGGCGCGTGTGGCGGTGGATATCAGTTTAGGCGTGGGAGATCTGA
TTCGGAACATGAGTTGCAAGTTGGTCTTTGGGGAAGCTAACATTTATGAA
TTTGATCTAAAGCTGTTGATTGAGGAAGCTTTGAACTTGACAGGAGCTTT
CAATATTGCTGATTATGTTCCTTTTTTAGGAGCATTTGATCTTCAGGGAT
TGAAACAACGTATGAAGGCATATAGCAACAAAATGGACAAAATCTTAGAG
AAGATAATAGATGAACATGAAAGGGAAGCTCAATGGCAAAAGCAACAGCA
AATAAGAGATTTTGTTGATGTGTTGCTTTCTTTGATGAACCAACCCATCG
CATCCAATGATGAATCACTCTCCACACTGGATAGAACCAACATAAAAGCT
ATTTTACAAGACATGATCATAGGTTCATTTGACACATCAGCCATTACCAT
TGAGTGGACACTCACAGAACTCCTCAGACATCCTTCTGCAATGAAACGCC
TGCAAGATGAATTGCAGAGTGTTGTTGGATTGGATAAAATGGTGCAGGAA
AAAGATCTCTCCAATCTTCCATATCTAGATATGGTTATAAAAGAAAGCTT
GAGGTTACATCCTGTTGGGCCACTTCTAATTCCTCGAAGCTGTATGGAGG
AGATAATAATTGATGGGTATCATATACCGAAGAAGGCAAGAATTATAGTG
AATGCTTGGGGAATTGGACGAGATCCTGATGTTTGGTCAGATAATGCAGA
AGAGTTTTTGCCAGAAAGATTTGCTGCGAAAAGTATAGACATTCGAGGAC
GTGATTTTGAGTTTCTCCCATTTGGTTCTGGGCGTAGAGGTTGCCCTGGA
ATGCAACTCGGATTAACTGTTGTTAGGCTTGTTATAGCTCAGCTAGTGCA
TTGCTTCAACTGGGAGCTCCCAGATGGTGTGCTGCCTGGTGAATTGGACA
TGAGTGAGGTATTTGGCCTGTCGATGCCAAGAGCTAGCCATTTGGTCGTG
GTGCCAAAGTATCGACTGGGTGTCTGA
back to top