Manes.01G011300.1.v6.1 (mRNA)

Overview
NameManes.01G011300.1
Unique NameManes.01G011300.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length3481
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:1998368..2001848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32357096
Longest1
AncestorIdentifiercassava4.1_004077m.v4.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G011300Manes.01G011300.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G011300.1Manes.01G011300.1.v6.1-proteinManihot esculentapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G011300.1.v6.1.five_prime_UTR.1Manes.01G011300.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G011300.1.v6.1.CDS.1Manes.01G011300.1.v6.1.CDS.1Manihot esculentaCDS
Manes.01G011300.1.v6.1.CDS.2Manes.01G011300.1.v6.1.CDS.2Manihot esculentaCDS
Manes.01G011300.1.v6.1.CDS.3Manes.01G011300.1.v6.1.CDS.3Manihot esculentaCDS
Manes.01G011300.1.v6.1.CDS.4Manes.01G011300.1.v6.1.CDS.4Manihot esculentaCDS
Manes.01G011300.1.v6.1.CDS.5Manes.01G011300.1.v6.1.CDS.5Manihot esculentaCDS
Manes.01G011300.1.v6.1.CDS.6Manes.01G011300.1.v6.1.CDS.6Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G011300.1.v6.1.three_prime_UTR.1Manes.01G011300.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G011300.1.v6.1 ID=Manes.01G011300.1.v6.1|Name=Manes.01G011300.1|organism=Manihot esculenta|type=mRNA|length=3481bp
TCACCACTTTTAATTTTCAAGGAGACTCAATTTTTGGAGCAACTACAAGA
AAATGCCATGCTCTAAAGAAACTCTCTTCTGGGTTTTCTACAATGTCTCA
AGCTCCTCCCTTCTCCTCCTCCTCTTCCTCTACTTTTCCTCCACTTTGCT
CCTCAAGCTCCTCAACTTCATTGGAAGCTACCCAATAATCCAAAGGTCTG
ATTCTAACTCCTTTTACTTTCTCCCTTGGATTTGTTTCTTTTCTCGGAGT
TTGCTAACTCTTTATTCTTTTTCTTGGTTGCAGAAATCAAAATGAATATG
AGTATAATTTTTTCTCTGATGAAGAGGAAGATGTAGATACTGAAACGTAC
TATTATACAGAGTCTAGAGAAAAAGATCACCTTGTGGCTGATGTAATTCA
TGGAGGTGAATCGCTTGTGTTTTTGTCTAACCGAAGTGTTACTCAGAGAA
CCCAAAATCATGTTCAAGAATTTGTGAACTCACGACAGTCCCTAGAAGAC
GAAGATGATGATAATGATGATGATGAAGACGATTCTGATAGTGATGAACA
GTTCTCTATTCTTGCGTCAGCAGGTTCAGAAGCTAAACATAATGATTCTG
ATCCTATGGTTGAAGAAGCAGAAGACATGACAGCGAGAGATGCTGATTCA
GTTCAAGATTCTGGTCCGGAACATGGCGGCCCCACCTCACCGTTCACCAC
ATACCGACAGAAAAATAGTTTGGTGGACAGTGACGAAAACTATGGTGGTA
TTTGCATCACAATATGCTTGTCTCTAGTTTGCAGTACTATGTTTTTTTAC
TGATCGTTCCTGATATTGCTTATGCTGAAACTTGCAGAAGATTACATTAA
TCAAGGAATACAAAATAAGAAGAAGATGGATCAGAATTTGCATGGGGATG
AAAAGGCTTTCATTTTTGCTGCAACCCAGATGGAATCCAAGAAACTTCAA
GTTCGAGAAAAGGATGATGAGGAGATATTTGGTGATTCATGCACTGTGGG
TTCAACATCTAAGAGCTCTTCTGAATGGAGAAGCTCAATTAAGGATTCAG
GGACTGAAGATCCATTTTCTTCTTCTTCAAGAAGAAGTTGCCCCAAGTGG
GAATCTTATACAGTGTTTCAAAAGTACGATGAAGAGATGATGTTCCTGGA
TAGAGTTAGTGCTCAAAAGCTTCATGAAACAGGTAACCATAGCAACTTTA
TATTATCTTTTTTCTCTTTTAATGACATTATTGATCTATATTACCCATTT
GCAGAATCACTTAAGTCTATTCAAGTGAATCCAAGATCAATTTCAGATAG
GATTGTTCATAAGATAGCAACTATGAACAAGAAAAAATCTTCAGATTTTC
GTCAAAACCCTTATCATGAACTTGAAGCTGCATATGTAGCTCAGATTTGC
TTGACATGGGAAGCTCTTAATTGGAACTACAAGAACTTCAATTCTAAGAG
AGCTTCAAAGAAAGATTTTGATCCTGGCTGTCCAGGGCATATTGCCCAGC
AGTTTCAGCAATTCCAAGTTCTCTTACAGCGTTACGTAGAAAATGAGCCT
TATGAACAAGGCCGGAGACCTGAAGTGTATGCCAGGATGAGACTTTTGGC
TCCAAAGCTACTTCTAGTCCCAGAGTACCGAGGTATGCAAATTGAGAAAA
ACTTACTTAGATTCGGTTCACTACTTAAGACACAAATCCTGTGGATCCAT
ATAATTTTTATACAGAGGAAATCACATGTTTATATCTTGTATTCATGGTG
GACCGAATTTACTCAAATTAATCCCATTTTTTAAATTTGAAAACTAAATT
ATTAATTTCTTAGTCCTTCTTCTAGGATCCTATCTACAGAATTAGAGGGT
CCAGAAATTAATTTGGATCCACATGTCTATGCTTTTCAGATTATGAACAG
AGCACTAGCATTATTTTACCATTTTTATTAGCTTTTCTTTATTCTTTCCA
AATGTAGGGTCTTCATTTCTTTAATTGGTTTCTTTTCCAAGAGAGGGGAG
GGGAAGGCTGGTCTCTAACTATATACATTACAAAGTAAACACTCAATTAC
TATACTTTTGACTTGTTTTAAAATCATGGGGTTGATGGGTACGGCCAATA
CAAGCTCGAGCTCATATGAAAATAAGCTCAATAATTGTTAGACTGAATAT
TTATATCTAGATTTTTCTATTCATCGTACACATTTTAATTAATGATACAA
AAATATTAATATAAATATTTGATTTAATTGTCGTTAAGCTCATTTTTATA
TAAAATAAAGTTTATGATGCATCATTGTTTAGTTGGCTTTTTGATTGTTT
GCTTACTTATATACATGAAAAAGATTCAGAAGATGATCCAAACGAGGATG
GTTTTGGCTCAAGAATTTCATCAGCTGCATTTCTAATGATAATGGAAGAC
GGAATCCGAAGTTTCATGGATTTTCTCAAGCTTGATAAGCAGAAACCGGG
ACAGATTCTAACATCTTTCTTTAAAAGAAACAGAAGAGGAACAGTTGATC
CTGCTCTTCTCCAACTAATGAAGAAAGTAAACAAAAAAGTAAGCTCTCTC
TCTCTCCCTATATATATATATAAGAAATTCTAAAAATAACTGCAAAAATT
GCTACAAAAATTATATTATAATTCTGAATTACTTTTCCCTATATATTGTG
ATGTGTAGAAGAAAATGAAGCTTAAAGATCTCCGGCGAGCTCGAAAATGC
ATAAGGAAAAAGAAGTTGAAGGTAGAGGAAGAGATGGAAATATTAATGGG
ATTAATAGATTTGAAAGTGGTGTCAAGAGTATTGAGAATGAGTGATATAA
GTGAAGAACAATTGCATTGGTGTGAAGAGAAGATGAGCAAAGTGAGAGTT
TTAGATGGGAAACTTCAAAGAGATTCCTTACCACTTTTCTTCCCAGCACA
TTGACTCAAAGACCCACCAAGCTGTTCATGTTATTGCTTGATGACTAGAT
CATGGATAACAAAATTGAATATCCTAGCTAGCTAGACATCCTCTTTTGTA
AAATCTGTAAAAAAAAAATTATAAATATAGAGGGTAGTGGGACCTACAAA
TCAAAGTGAGTTCATGTGGGTGACATGGAATTTGGAGATATGGAATCCAT
TGATGAAGAGTAAAGAAAGAGATGTGTAGTGTTGATGAACAATGAAAGTG
AAAGAGCAAAGACAAAGAAAGGAACATTGCATGTAGAATTTGAGATAGAG
ACAATTGGGTAGCTTTAATTTTTCACTTTAGCTTTTTTTAGTTAGGGTTT
ATCTATAAGGGATTTTTTTATTTTTTATTTAGCTGAATCAAAAGAAGAGA
AAAAAGATGAATAGCACATGATACACATAAAGAGGATATCTAGGGTTTTA
TACTGTGGGGTTTGAAGAAGAAAAAAAATGAATAAATCAACATTGAATTG
ATAATTTATTAATTTATTTTTATAAAAAGCAAATCTTGTTTCTGTATCTT
TGTTTGGATTACTTTTTTAAGAAAAGCATCA
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mRNA from alignment at Chromosome01:1998368..2001848+

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G011300.1.v6.1 ID=Manes.01G011300.1.v6.1|Name=Manes.01G011300.1|organism=Manihot esculenta|type=mRNA|length=3481bp|location=Sequence derived from alignment at Chromosome01:1998368..2001848+ (Manihot esculenta)
TCACCACTTTTAATTTTCAAGGAGACTCAATTTTTGGAGCAACTACAAGA AAATGCCATGCTCTAAAGAAACTCTCTTCTGGGTTTTCTACAATGTCTCA AGCTCCTCCCTTCTCCTCCTCCTCTTCCTCTACTTTTCCTCCACTTTGCT CCTCAAGCTCCTCAACTTCATTGGAAGCTACCCAATAATCCAAAGGTCTG ATTCTAACTCCTTTTACTTTCTCCCTTGGATTTGTTTCTTTTCTCGGAGT TTGCTAACTCTTTATTCTTTTTCTTGGTTGCAGAAATCAAAATGAATATG AGTATAATTTTTTCTCTGATGAAGAGGAAGATGTAGATACTGAAACGTAC TATTATACAGAGTCTAGAGAAAAAGATCACCTTGTGGCTGATGTAATTCA TGGAGGTGAATCGCTTGTGTTTTTGTCTAACCGAAGTGTTACTCAGAGAA CCCAAAATCATGTTCAAGAATTTGTGAACTCACGACAGTCCCTAGAAGAC GAAGATGATGATAATGATGATGATGAAGACGATTCTGATAGTGATGAACA GTTCTCTATTCTTGCGTCAGCAGGTTCAGAAGCTAAACATAATGATTCTG ATCCTATGGTTGAAGAAGCAGAAGACATGACAGCGAGAGATGCTGATTCA GTTCAAGATTCTGGTCCGGAACATGGCGGCCCCACCTCACCGTTCACCAC ATACCGACAGAAAAATAGTTTGGTGGACAGTGACGAAAACTATGGTGGTA TTTGCATCACAATATGCTTGTCTCTAGTTTGCAGTACTATGTTTTTTTAC TGATCGTTCCTGATATTGCTTATGCTGAAACTTGCAGAAGATTACATTAA TCAAGGAATACAAAATAAGAAGAAGATGGATCAGAATTTGCATGGGGATG AAAAGGCTTTCATTTTTGCTGCAACCCAGATGGAATCCAAGAAACTTCAA GTTCGAGAAAAGGATGATGAGGAGATATTTGGTGATTCATGCACTGTGGG TTCAACATCTAAGAGCTCTTCTGAATGGAGAAGCTCAATTAAGGATTCAG GGACTGAAGATCCATTTTCTTCTTCTTCAAGAAGAAGTTGCCCCAAGTGG GAATCTTATACAGTGTTTCAAAAGTACGATGAAGAGATGATGTTCCTGGA TAGAGTTAGTGCTCAAAAGCTTCATGAAACAGGTAACCATAGCAACTTTA TATTATCTTTTTTCTCTTTTAATGACATTATTGATCTATATTACCCATTT GCAGAATCACTTAAGTCTATTCAAGTGAATCCAAGATCAATTTCAGATAG GATTGTTCATAAGATAGCAACTATGAACAAGAAAAAATCTTCAGATTTTC GTCAAAACCCTTATCATGAACTTGAAGCTGCATATGTAGCTCAGATTTGC TTGACATGGGAAGCTCTTAATTGGAACTACAAGAACTTCAATTCTAAGAG AGCTTCAAAGAAAGATTTTGATCCTGGCTGTCCAGGGCATATTGCCCAGC AGTTTCAGCAATTCCAAGTTCTCTTACAGCGTTACGTAGAAAATGAGCCT TATGAACAAGGCCGGAGACCTGAAGTGTATGCCAGGATGAGACTTTTGGC TCCAAAGCTACTTCTAGTCCCAGAGTACCGAGGTATGCAAATTGAGAAAA ACTTACTTAGATTCGGTTCACTACTTAAGACACAAATCCTGTGGATCCAT ATAATTTTTATACAGAGGAAATCACATGTTTATATCTTGTATTCATGGTG GACCGAATTTACTCAAATTAATCCCATTTTTTAAATTTGAAAACTAAATT ATTAATTTCTTAGTCCTTCTTCTAGGATCCTATCTACAGAATTAGAGGGT CCAGAAATTAATTTGGATCCACATGTCTATGCTTTTCAGATTATGAACAG AGCACTAGCATTATTTTACCATTTTTATTAGCTTTTCTTTATTCTTTCCA AATGTAGGGTCTTCATTTCTTTAATTGGTTTCTTTTCCAAGAGAGGGGAG GGGAAGGCTGGTCTCTAACTATATACATTACAAAGTAAACACTCAATTAC TATACTTTTGACTTGTTTTAAAATCATGGGGTTGATGGGTACGGCCAATA CAAGCTCGAGCTCATATGAAAATAAGCTCAATAATTGTTAGACTGAATAT TTATATCTAGATTTTTCTATTCATCGTACACATTTTAATTAATGATACAA AAATATTAATATAAATATTTGATTTAATTGTCGTTAAGCTCATTTTTATA TAAAATAAAGTTTATGATGCATCATTGTTTAGTTGGCTTTTTGATTGTTT GCTTACTTATATACATGAAAAAGATTCAGAAGATGATCCAAACGAGGATG GTTTTGGCTCAAGAATTTCATCAGCTGCATTTCTAATGATAATGGAAGAC GGAATCCGAAGTTTCATGGATTTTCTCAAGCTTGATAAGCAGAAACCGGG ACAGATTCTAACATCTTTCTTTAAAAGAAACAGAAGAGGAACAGTTGATC CTGCTCTTCTCCAACTAATGAAGAAAGTAAACAAAAAAGTAAGCTCTCTC TCTCTCCCTATATATATATATAAGAAATTCTAAAAATAACTGCAAAAATT GCTACAAAAATTATATTATAATTCTGAATTACTTTTCCCTATATATTGTG ATGTGTAGAAGAAAATGAAGCTTAAAGATCTCCGGCGAGCTCGAAAATGC ATAAGGAAAAAGAAGTTGAAGGTAGAGGAAGAGATGGAAATATTAATGGG ATTAATAGATTTGAAAGTGGTGTCAAGAGTATTGAGAATGAGTGATATAA GTGAAGAACAATTGCATTGGTGTGAAGAGAAGATGAGCAAAGTGAGAGTT TTAGATGGGAAACTTCAAAGAGATTCCTTACCACTTTTCTTCCCAGCACA TTGACTCAAAGACCCACCAAGCTGTTCATGTTATTGCTTGATGACTAGAT CATGGATAACAAAATTGAATATCCTAGCTAGCTAGACATCCTCTTTTGTA AAATCTGTAAAAAAAAAATTATAAATATAGAGGGTAGTGGGACCTACAAA TCAAAGTGAGTTCATGTGGGTGACATGGAATTTGGAGATATGGAATCCAT TGATGAAGAGTAAAGAAAGAGATGTGTAGTGTTGATGAACAATGAAAGTG AAAGAGCAAAGACAAAGAAAGGAACATTGCATGTAGAATTTGAGATAGAG ACAATTGGGTAGCTTTAATTTTTCACTTTAGCTTTTTTTAGTTAGGGTTT ATCTATAAGGGATTTTTTTATTTTTTATTTAGCTGAATCAAAAGAAGAGA AAAAAGATGAATAGCACATGATACACATAAAGAGGATATCTAGGGTTTTA TACTGTGGGGTTTGAAGAAGAAAAAAAATGAATAAATCAACATTGAATTG ATAATTTATTAATTTATTTTTATAAAAAGCAAATCTTGTTTCTGTATCTT TGTTTGGATTACTTTTTTAAGAAAAGCATCA
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Coding sequence (CDS) from alignment at Chromosome01:1998368..2001848+

>Manes.01G011300.1.v6.1 ID=Manes.01G011300.1.v6.1|Name=Manes.01G011300.1|organism=Manihot esculenta|type=CDS|length=1791bp|location=Sequence derived from alignment at Chromosome01:1998368..2001848+ (Manihot esculenta)
ATGCCATGCTCTAAAGAAACTCTCTTCTGGGTTTTCTACAATGTCTCAAG
CTCCTCCCTTCTCCTCCTCCTCTTCCTCTACTTTTCCTCCACTTTGCTCC
TCAAGCTCCTCAACTTCATTGGAAGCTACCCAATAATCCAAAGAAATCAA
AATGAATATGAGTATAATTTTTTCTCTGATGAAGAGGAAGATGTAGATAC
TGAAACGTACTATTATACAGAGTCTAGAGAAAAAGATCACCTTGTGGCTG
ATGTAATTCATGGAGGTGAATCGCTTGTGTTTTTGTCTAACCGAAGTGTT
ACTCAGAGAACCCAAAATCATGTTCAAGAATTTGTGAACTCACGACAGTC
CCTAGAAGACGAAGATGATGATAATGATGATGATGAAGACGATTCTGATA
GTGATGAACAGTTCTCTATTCTTGCGTCAGCAGGTTCAGAAGCTAAACAT
AATGATTCTGATCCTATGGTTGAAGAAGCAGAAGACATGACAGCGAGAGA
TGCTGATTCAGTTCAAGATTCTGGTCCGGAACATGGCGGCCCCACCTCAC
CGTTCACCACATACCGACAGAAAAATAGTTTGGTGGACAGTGACGAAAAC
TATGGTGAAGATTACATTAATCAAGGAATACAAAATAAGAAGAAGATGGA
TCAGAATTTGCATGGGGATGAAAAGGCTTTCATTTTTGCTGCAACCCAGA
TGGAATCCAAGAAACTTCAAGTTCGAGAAAAGGATGATGAGGAGATATTT
GGTGATTCATGCACTGTGGGTTCAACATCTAAGAGCTCTTCTGAATGGAG
AAGCTCAATTAAGGATTCAGGGACTGAAGATCCATTTTCTTCTTCTTCAA
GAAGAAGTTGCCCCAAGTGGGAATCTTATACAGTGTTTCAAAAGTACGAT
GAAGAGATGATGTTCCTGGATAGAGTTAGTGCTCAAAAGCTTCATGAAAC
AGAATCACTTAAGTCTATTCAAGTGAATCCAAGATCAATTTCAGATAGGA
TTGTTCATAAGATAGCAACTATGAACAAGAAAAAATCTTCAGATTTTCGT
CAAAACCCTTATCATGAACTTGAAGCTGCATATGTAGCTCAGATTTGCTT
GACATGGGAAGCTCTTAATTGGAACTACAAGAACTTCAATTCTAAGAGAG
CTTCAAAGAAAGATTTTGATCCTGGCTGTCCAGGGCATATTGCCCAGCAG
TTTCAGCAATTCCAAGTTCTCTTACAGCGTTACGTAGAAAATGAGCCTTA
TGAACAAGGCCGGAGACCTGAAGTGTATGCCAGGATGAGACTTTTGGCTC
CAAAGCTACTTCTAGTCCCAGAGTACCGAGATTCAGAAGATGATCCAAAC
GAGGATGGTTTTGGCTCAAGAATTTCATCAGCTGCATTTCTAATGATAAT
GGAAGACGGAATCCGAAGTTTCATGGATTTTCTCAAGCTTGATAAGCAGA
AACCGGGACAGATTCTAACATCTTTCTTTAAAAGAAACAGAAGAGGAACA
GTTGATCCTGCTCTTCTCCAACTAATGAAGAAAGTAAACAAAAAAAAGAA
AATGAAGCTTAAAGATCTCCGGCGAGCTCGAAAATGCATAAGGAAAAAGA
AGTTGAAGGTAGAGGAAGAGATGGAAATATTAATGGGATTAATAGATTTG
AAAGTGGTGTCAAGAGTATTGAGAATGAGTGATATAAGTGAAGAACAATT
GCATTGGTGTGAAGAGAAGATGAGCAAAGTGAGAGTTTTAGATGGGAAAC
TTCAAAGAGATTCCTTACCACTTTTCTTCCCAGCACATTGA
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