Manes.01G011200.1.v6.1 (mRNA)

Overview
NameManes.01G011200.1
Unique NameManes.01G011200.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length2131
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:1989479..1991609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32359868
Longest1
AncestorIdentifiercassava4.1_027587m.v4.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G011200Manes.01G011200.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G011200.1Manes.01G011200.1.v6.1-proteinManihot esculentapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G011200.1.v6.1.CDS.3Manes.01G011200.1.v6.1.CDS.3Manihot esculentaCDS
Manes.01G011200.1.v6.1.CDS.2Manes.01G011200.1.v6.1.CDS.2Manihot esculentaCDS
Manes.01G011200.1.v6.1.CDS.1Manes.01G011200.1.v6.1.CDS.1Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G011200.1.v6.1.three_prime_UTR.1Manes.01G011200.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G011200.1.v6.1.five_prime_UTR.1Manes.01G011200.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G011200.1.v6.1 ID=Manes.01G011200.1.v6.1|Name=Manes.01G011200.1|organism=Manihot esculenta|type=mRNA|length=2131bp
ATGAACATAACAATTATTAATTAAAGAACAAATTACCCTATAGCTAGCTA
CTTCACATTGATAATCAACTTAACACTTGAATATAAAGAAACATAACCAC
AATTTTCATTTTTTGAAAGTTCTCCAATGTTTACATCTAAATTACACCAA
CCATTAATCATTATTCTTGTGTGATGCATGCATGAGCTGTTGGTGGTGGC
TCCATTACTAACGTGTCACGAGGGGAAAACATGGATAGACCGAATCTACA
TGATCCATAGTATAAACACATGAAATTTCATATGGATTCCACCGTCATTT
TGAACTAGGGATCCACGAATTTTCCCATGTGATACCCTTTAACATTTTCA
GCTTTGGTTGAAGATGACTAAGTACAGAAATGAAGTTAGTTTTTCAACTT
TACAGCTTTCACCAAATGGAGTCCAAATTGAATGGTTGCTCCTGCTGTAA
AGGTTGAGGTAGCGTTTCTAAAACCTTAGAGGAAGAAGAAGAAGAACAGC
CATGGAAATTTGAACTTAAATCAGCTCCAAACTGAGAAATAATACTCCCT
TGTGTCAGAAATGAATAATGATCACTACTACTTGGAGCAACAGCAGCAGC
AGCAGCAGCAGCAGCTTCTCTTTGATGATAGTTTCTCATCTGTAATGCCT
TGAGAAGCAAGGCATTCATAGTAAGATTTGAGCTTAGCAAGCTTGAAGGC
CATGAAAGTGAAGGTTGTTGTTCTCTTGTTGCAGCCCAATTATGAAGGTT
CATGTTCATATTTACGTTGGTTTCGTTGTTGCAACTACTTTGTGTCAGGA
AAGTGTTGAAACCATTTGATGAGTTTACAATGTTGTTTATGTTTGGTAAC
TCAATATCTCCAAACTCATTGACTATGGAGTTTGTATCACATGGAGACTC
TAGAGATTGCTGCGAGGATTCTGTCTGCTGTGGGTTTTTTGTTGCTTCTG
AGCTCTTTTGGAATACCCTGCAAACCACCCATTCCTCCTGCAAGAATTTA
ATTTCAATCCAAGAAAAATCAGAGAATATATACTAGTCTTATTTCTATAC
TTTTTATTTTAATTTTTTATATTAATATAAATTTTTTATTATTTATAAAT
TTTTAATAAATAAAAATTATAAGAGGAAAAGAAGATAATGCGTATTAACT
TAGTACAAATAATATACCTTAGTGGGCTTGAAAGGATGCTTATTTTGGAG
CCTGTATTCATGCATAACCCAATTAGTTTTCTGACCCCTTGGAGCTCTAC
CCTGGTAGAAAACTAGGGTTTTTTTCATACCCACCAGTATTGCACCACGA
AATATTTCCTTATCCTTTCCTGTGGTTTTCCAATACCCTGCTTCTGTTGC
TCTATTTGTTCGAAGTCCTGTTGGGTATTTTCTATCTCTCAAGCTGAAAA
AATACCATTCTTTCTCCCCCATGGATGCTTTGCCTGCACCACATTTTAAA
TTAACCTAAATATGTTATCAGGTCTAAAGAATTTTATTAATTTAATAATG
CTGAAGTCATCTACCGAATTATCAAGTTTTACGTTTAAATCTCAAGTCAA
ATCTCGAATTCGAATTTTAGGTTTTGTAGAGAAAAAAGAAGGAAAGAAGA
GTAATTAACTCAGACTCTCAACATGGACAACATGCTTATGGTATTGCAGA
GGCAAAGAATGTAAGTAGATAGAGATCAGAACATATAGAAAGCATTCAAA
CTGCATCCACATGCAAAATAAGAGAAAAATGAAGAAGACGAAGAAGAAGA
AGAAGAAGAAGAAGAAGGTACCTGGGAGATCCCATGGTTCACACTTATTG
AGATCAGCATCGACAATAGCTTTAGACGTGAAACTAACATCAGAAACCTT
TGGTGTAAGATAAAACGTAATGAGCTCTTCATCTGTTGGATGGAATCTGA
ACCCTGGAGGAAGATTTTCCTCCATATTTTTCAAGATTCAACAACTGATC
ACTGAAAGCAGTATATGAAGCCCTAATGGCATCAGCAAGAAAGAGTTATA
TTAAGGCTGTGGCTTCTTCCCTGTAAAATCAACCTTCAAGAAGAAGCAGC
CATGGCTAGCTAACTAGTCCTCCTTTTTTATCTTGATAATTACAGCTAAC
ACTTTGACAAAGATGGTTCATGAACTCTTAA
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mRNA from alignment at Chromosome01:1989479..1991609-

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G011200.1.v6.1 ID=Manes.01G011200.1.v6.1|Name=Manes.01G011200.1|organism=Manihot esculenta|type=mRNA|length=2131bp|location=Sequence derived from alignment at Chromosome01:1989479..1991609- (Manihot esculenta)
TTAAGAGTTCATGAACCATCTTTGTCAAAGTGTTAGCTGTAATTATCAAG ATAAAAAAGGAGGACTAGTTAGCTAGCCATGGCTGCTTCTTCTTGAAGGT TGATTTTACAGGGAAGAAGCCACAGCCTTAATATAACTCTTTCTTGCTGA TGCCATTAGGGCTTCATATACTGCTTTCAGTGATCAGTTGTTGAATCTTG AAAAATATGGAGGAAAATCTTCCTCCAGGGTTCAGATTCCATCCAACAGA TGAAGAGCTCATTACGTTTTATCTTACACCAAAGGTTTCTGATGTTAGTT TCACGTCTAAAGCTATTGTCGATGCTGATCTCAATAAGTGTGAACCATGG GATCTCCCAGGTACCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTTCTT CATTTTTCTCTTATTTTGCATGTGGATGCAGTTTGAATGCTTTCTATATG TTCTGATCTCTATCTACTTACATTCTTTGCCTCTGCAATACCATAAGCAT GTTGTCCATGTTGAGAGTCTGAGTTAATTACTCTTCTTTCCTTCTTTTTT CTCTACAAAACCTAAAATTCGAATTCGAGATTTGACTTGAGATTTAAACG TAAAACTTGATAATTCGGTAGATGACTTCAGCATTATTAAATTAATAAAA TTCTTTAGACCTGATAACATATTTAGGTTAATTTAAAATGTGGTGCAGGC AAAGCATCCATGGGGGAGAAAGAATGGTATTTTTTCAGCTTGAGAGATAG AAAATACCCAACAGGACTTCGAACAAATAGAGCAACAGAAGCAGGGTATT GGAAAACCACAGGAAAGGATAAGGAAATATTTCGTGGTGCAATACTGGTG GGTATGAAAAAAACCCTAGTTTTCTACCAGGGTAGAGCTCCAAGGGGTCA GAAAACTAATTGGGTTATGCATGAATACAGGCTCCAAAATAAGCATCCTT TCAAGCCCACTAAGGTATATTATTTGTACTAAGTTAATACGCATTATCTT CTTTTCCTCTTATAATTTTTATTTATTAAAAATTTATAAATAATAAAAAA TTTATATTAATATAAAAAATTAAAATAAAAAGTATAGAAATAAGACTAGT ATATATTCTCTGATTTTTCTTGGATTGAAATTAAATTCTTGCAGGAGGAA TGGGTGGTTTGCAGGGTATTCCAAAAGAGCTCAGAAGCAACAAAAAACCC ACAGCAGACAGAATCCTCGCAGCAATCTCTAGAGTCTCCATGTGATACAA ACTCCATAGTCAATGAGTTTGGAGATATTGAGTTACCAAACATAAACAAC ATTGTAAACTCATCAAATGGTTTCAACACTTTCCTGACACAAAGTAGTTG CAACAACGAAACCAACGTAAATATGAACATGAACCTTCATAATTGGGCTG CAACAAGAGAACAACAACCTTCACTTTCATGGCCTTCAAGCTTGCTAAGC TCAAATCTTACTATGAATGCCTTGCTTCTCAAGGCATTACAGATGAGAAA CTATCATCAAAGAGAAGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTCCAA GTAGTAGTGATCATTATTCATTTCTGACACAAGGGAGTATTATTTCTCAG TTTGGAGCTGATTTAAGTTCAAATTTCCATGGCTGTTCTTCTTCTTCTTC CTCTAAGGTTTTAGAAACGCTACCTCAACCTTTACAGCAGGAGCAACCAT TCAATTTGGACTCCATTTGGTGAAAGCTGTAAAGTTGAAAAACTAACTTC ATTTCTGTACTTAGTCATCTTCAACCAAAGCTGAAAATGTTAAAGGGTAT CACATGGGAAAATTCGTGGATCCCTAGTTCAAAATGACGGTGGAATCCAT ATGAAATTTCATGTGTTTATACTATGGATCATGTAGATTCGGTCTATCCA TGTTTTCCCCTCGTGACACGTTAGTAATGGAGCCACCACCAACAGCTCAT GCATGCATCACACAAGAATAATGATTAATGGTTGGTGTAATTTAGATGTA AACATTGGAGAACTTTCAAAAAATGAAAATTGTGGTTATGTTTCTTTATA TTCAAGTGTTAAGTTGATTATCAATGTGAAGTAGCTAGCTATAGGGTAAT TTGTTCTTTAATTAATAATTGTTATGTTCAT
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Coding sequence (CDS) from alignment at Chromosome01:1989479..1991609-

>Manes.01G011200.1.v6.1 ID=Manes.01G011200.1.v6.1|Name=Manes.01G011200.1|organism=Manihot esculenta|type=CDS|length=999bp|location=Sequence derived from alignment at Chromosome01:1989479..1991609- (Manihot esculenta)
ATGGAGGAAAATCTTCCTCCAGGGTTCAGATTCCATCCAACAGATGAAGA
GCTCATTACGTTTTATCTTACACCAAAGGTTTCTGATGTTAGTTTCACGT
CTAAAGCTATTGTCGATGCTGATCTCAATAAGTGTGAACCATGGGATCTC
CCAGGCAAAGCATCCATGGGGGAGAAAGAATGGTATTTTTTCAGCTTGAG
AGATAGAAAATACCCAACAGGACTTCGAACAAATAGAGCAACAGAAGCAG
GGTATTGGAAAACCACAGGAAAGGATAAGGAAATATTTCGTGGTGCAATA
CTGGTGGGTATGAAAAAAACCCTAGTTTTCTACCAGGGTAGAGCTCCAAG
GGGTCAGAAAACTAATTGGGTTATGCATGAATACAGGCTCCAAAATAAGC
ATCCTTTCAAGCCCACTAAGGAGGAATGGGTGGTTTGCAGGGTATTCCAA
AAGAGCTCAGAAGCAACAAAAAACCCACAGCAGACAGAATCCTCGCAGCA
ATCTCTAGAGTCTCCATGTGATACAAACTCCATAGTCAATGAGTTTGGAG
ATATTGAGTTACCAAACATAAACAACATTGTAAACTCATCAAATGGTTTC
AACACTTTCCTGACACAAAGTAGTTGCAACAACGAAACCAACGTAAATAT
GAACATGAACCTTCATAATTGGGCTGCAACAAGAGAACAACAACCTTCAC
TTTCATGGCCTTCAAGCTTGCTAAGCTCAAATCTTACTATGAATGCCTTG
CTTCTCAAGGCATTACAGATGAGAAACTATCATCAAAGAGAAGCTGCTGC
TGCTGCTGCTGCTGCTGTTGCTCCAAGTAGTAGTGATCATTATTCATTTC
TGACACAAGGGAGTATTATTTCTCAGTTTGGAGCTGATTTAAGTTCAAAT
TTCCATGGCTGTTCTTCTTCTTCTTCCTCTAAGGTTTTAGAAACGCTACC
TCAACCTTTACAGCAGGAGCAACCATTCAATTTGGACTCCATTTGGTGA
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