Manes.01G010800.2.v6.1 (mRNA)

Overview
NameManes.01G010800.2
Unique NameManes.01G010800.2.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length1200
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:1922404..1923603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32359032
Longest0
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G010800Manes.01G010800.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G010800.2Manes.01G010800.2.v6.1-proteinManihot esculentapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G010800.2.v6.1.five_prime_UTR.1Manes.01G010800.2.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G010800.2.v6.1.CDS.1Manes.01G010800.2.v6.1.CDS.1Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G010800.2.v6.1.three_prime_UTR.1Manes.01G010800.2.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G010800.2.v6.1 ID=Manes.01G010800.2.v6.1|Name=Manes.01G010800.2|organism=Manihot esculenta|type=mRNA|length=1200bp
AATTAAGGTATTTCAGGATTTGGGTCTTGAGGGATATGATCTGGGCATGT
TCATTTCCAAGAGTTCCTCAGTTTTAGGTGCAAGTTTGAAGAACAAGTTG
GTTCCTTGTATTGAAATCTTGAAGAAACATTTGTTGAATCAAAAGAATAA
TAAGCATGTGGTAAAGGTTTTAACTAGATGCGCTTGGGTTGTTACCAAAA
AAAACCCTGAATCAAGATTGTTATCAGGCATAGCATACTGGGAGAGTTGT
GGGATAGTTGGATCTCAGCTCTCAATGTTGTTAGTTAGGCAGCCTAGACT
ACTTTGTTGCCCAGAATCCGTGCTTAGAGATCTTGTTTCTCGAACTTTGA
ATATGGGATTCTCAGCCAATTCGGGGATGTTGATTCATGGTCTATGTGCT
GTTTATAGCTTAAGTGACAAGACAATTGAGAGAAAATATGGAATTTTTAG
GAGTTTTGGGTTTTCAGAGTATCAATACAGAGAAATATTTAGAAAGGCTC
CATATTCTCTATTAATGTCTGACGAGCAGTTGAAGTTTAGAATTAATTTC
TTTTTGAACACGGCGAAGCTAGAAAAGGAGACTCTAATTTGTAATCCTGC
AATTTTGATGCAGAGCATGGAAGAAAGAGTGATTCCTCGATTCAAAGTTT
TTGAGATTTTGAAATCGAAGAAATTATTTAAGAAGGAACCAAGCTTTGTT
AGGCTGTTGTTTTTGACAGAGGAAGTGTTTGTTCAGAGGTTTATATCAAG
CTTTTCAGATAAAGCAGAAGAATTGTTGCTAGCTTACAAAGGTCATACTC
TGGATTCATCTTCCAAAAAGGAAAAATCTTAAATACAAGTTAGTCCTCTA
AGTCCCTTTTCTTAAAACTGGATTTGCAATGTTTGTAACTTGCATTATGC
CACTTCAACATTGGCTGCAGCAGACCTCGCTTGACGAATCGGAATCTATG
TGGAAACCGATTTGGTGTATCCTCTACTGATGAGGCCTTTTTATTCCGAG
AATGAATAATGATGTTAACCACTGCAGTTTATCCAAATAGCCAATCAACT
TAAATTCTTCATGGATATAAGAGAGTTTGACTTGGTTATTGTTGATTGCT
ATGATTATTTATTTATTTATTCTGTTTGTGTTGTAAATTGACGTACAAGA
TATTTGAACTTGTGGACAAATATTAATGCAATGACAAATAAGTTGGAGTT
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mRNA from alignment at Chromosome01:1922404..1923603+

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G010800.2.v6.1 ID=Manes.01G010800.2.v6.1|Name=Manes.01G010800.2|organism=Manihot esculenta|type=mRNA|length=1200bp|location=Sequence derived from alignment at Chromosome01:1922404..1923603+ (Manihot esculenta)
AATTAAGGTATTTCAGGATTTGGGTCTTGAGGGATATGATCTGGGCATGT TCATTTCCAAGAGTTCCTCAGTTTTAGGTGCAAGTTTGAAGAACAAGTTG GTTCCTTGTATTGAAATCTTGAAGAAACATTTGTTGAATCAAAAGAATAA TAAGCATGTGGTAAAGGTTTTAACTAGATGCGCTTGGGTTGTTACCAAAA AAAACCCTGAATCAAGATTGTTATCAGGCATAGCATACTGGGAGAGTTGT GGGATAGTTGGATCTCAGCTCTCAATGTTGTTAGTTAGGCAGCCTAGACT ACTTTGTTGCCCAGAATCCGTGCTTAGAGATCTTGTTTCTCGAACTTTGA ATATGGGATTCTCAGCCAATTCGGGGATGTTGATTCATGGTCTATGTGCT GTTTATAGCTTAAGTGACAAGACAATTGAGAGAAAATATGGAATTTTTAG GAGTTTTGGGTTTTCAGAGTATCAATACAGAGAAATATTTAGAAAGGCTC CATATTCTCTATTAATGTCTGACGAGCAGTTGAAGTTTAGAATTAATTTC TTTTTGAACACGGCGAAGCTAGAAAAGGAGACTCTAATTTGTAATCCTGC AATTTTGATGCAGAGCATGGAAGAAAGAGTGATTCCTCGATTCAAAGTTT TTGAGATTTTGAAATCGAAGAAATTATTTAAGAAGGAACCAAGCTTTGTT AGGCTGTTGTTTTTGACAGAGGAAGTGTTTGTTCAGAGGTTTATATCAAG CTTTTCAGATAAAGCAGAAGAATTGTTGCTAGCTTACAAAGGTCATACTC TGGATTCATCTTCCAAAAAGGAAAAATCTTAAATACAAGTTAGTCCTCTA AGTCCCTTTTCTTAAAACTGGATTTGCAATGTTTGTAACTTGCATTATGC CACTTCAACATTGGCTGCAGCAGACCTCGCTTGACGAATCGGAATCTATG TGGAAACCGATTTGGTGTATCCTCTACTGATGAGGCCTTTTTATTCCGAG AATGAATAATGATGTTAACCACTGCAGTTTATCCAAATAGCCAATCAACT TAAATTCTTCATGGATATAAGAGAGTTTGACTTGGTTATTGTTGATTGCT ATGATTATTTATTTATTTATTCTGTTTGTGTTGTAAATTGACGTACAAGA TATTTGAACTTGTGGACAAATATTAATGCAATGACAAATAAGTTGGAGTT
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Coding sequence (CDS) from alignment at Chromosome01:1922404..1923603+

>Manes.01G010800.2.v6.1 ID=Manes.01G010800.2.v6.1|Name=Manes.01G010800.2|organism=Manihot esculenta|type=CDS|length=786bp|location=Sequence derived from alignment at Chromosome01:1922404..1923603+ (Manihot esculenta)
ATGTTCATTTCCAAGAGTTCCTCAGTTTTAGGTGCAAGTTTGAAGAACAA
GTTGGTTCCTTGTATTGAAATCTTGAAGAAACATTTGTTGAATCAAAAGA
ATAATAAGCATGTGGTAAAGGTTTTAACTAGATGCGCTTGGGTTGTTACC
AAAAAAAACCCTGAATCAAGATTGTTATCAGGCATAGCATACTGGGAGAG
TTGTGGGATAGTTGGATCTCAGCTCTCAATGTTGTTAGTTAGGCAGCCTA
GACTACTTTGTTGCCCAGAATCCGTGCTTAGAGATCTTGTTTCTCGAACT
TTGAATATGGGATTCTCAGCCAATTCGGGGATGTTGATTCATGGTCTATG
TGCTGTTTATAGCTTAAGTGACAAGACAATTGAGAGAAAATATGGAATTT
TTAGGAGTTTTGGGTTTTCAGAGTATCAATACAGAGAAATATTTAGAAAG
GCTCCATATTCTCTATTAATGTCTGACGAGCAGTTGAAGTTTAGAATTAA
TTTCTTTTTGAACACGGCGAAGCTAGAAAAGGAGACTCTAATTTGTAATC
CTGCAATTTTGATGCAGAGCATGGAAGAAAGAGTGATTCCTCGATTCAAA
GTTTTTGAGATTTTGAAATCGAAGAAATTATTTAAGAAGGAACCAAGCTT
TGTTAGGCTGTTGTTTTTGACAGAGGAAGTGTTTGTTCAGAGGTTTATAT
CAAGCTTTTCAGATAAAGCAGAAGAATTGTTGCTAGCTTACAAAGGTCAT
ACTCTGGATTCATCTTCCAAAAAGGAAAAATCTTAA
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