Manes.01G010500.1.v6.1 (mRNA)

Overview
NameManes.01G010500.1
Unique NameManes.01G010500.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length689
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:1844673..1845361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32359659
Longest1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G010500Manes.01G010500.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G010500.1Manes.01G010500.1.v6.1-proteinManihot esculentapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G010500.1.v6.1.five_prime_UTR.1Manes.01G010500.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G010500.1.v6.1.CDS.1Manes.01G010500.1.v6.1.CDS.1Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G010500.1.v6.1.three_prime_UTR.1Manes.01G010500.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G010500.1.v6.1 ID=Manes.01G010500.1.v6.1|Name=Manes.01G010500.1|organism=Manihot esculenta|type=mRNA|length=689bp
AGTGAACAAGGTTCGCCTTAAAATTTGACAATTCAACTTCCAAAGCACTT
CAAATACCCAGTCGATACTTGGGCACCACGACCAAATGGCTAGCTCTTGG
CAACGACAGGCCAAATACCTCACTCATGTCCAATTCACCAGGCAACACGC
CATCTGGGAGCTCCCAGTTGAAGCAATGCACTAGCTGAGCTATAACAAGC
CTAACAACAGTTAATCCGAGTTGCATTCCAGGGCAACCTCTACGCCCAGA
ACCAAATGGGAGAAACTCAAAATCACGTCCTCGAATGTCTATACTTTTCG
CAGCAAATCTTTCTGGCAAAAACTCTTCTGCATTATCTGACCAAACATCA
GGATCTCGTCCAATTCCCCAAGCATTCACTATAATTCTTGCCTTCTTCGG
TATATGATACCCATCAATTATTATCTCCTCCATACAGCTTCGAGGAATTA
GAAGTGGCCCAACAGGATGTAACCTCAAGCTTTCTTTTATAACCATATCT
AGATATGGAAGATTGGAGAGATCTTTTTCCTCCACCATTTTATCCAATCC
AACAACACTCTGCAATTCATCTTGCAGGCGTTTCATTGCAGAAGGATGTC
TGAGGGGTTCTGTGAGTGTCCACTCAATGGTAATAGCTGAAGTGTCAAAT
GAACCTATGATCATGTCTTGTAAAATAGCTTTTATGTTG
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mRNA from alignment at Chromosome01:1844673..1845361-

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G010500.1.v6.1 ID=Manes.01G010500.1.v6.1|Name=Manes.01G010500.1|organism=Manihot esculenta|type=mRNA|length=689bp|location=Sequence derived from alignment at Chromosome01:1844673..1845361- (Manihot esculenta)
CAACATAAAAGCTATTTTACAAGACATGATCATAGGTTCATTTGACACTT CAGCTATTACCATTGAGTGGACACTCACAGAACCCCTCAGACATCCTTCT GCAATGAAACGCCTGCAAGATGAATTGCAGAGTGTTGTTGGATTGGATAA AATGGTGGAGGAAAAAGATCTCTCCAATCTTCCATATCTAGATATGGTTA TAAAAGAAAGCTTGAGGTTACATCCTGTTGGGCCACTTCTAATTCCTCGA AGCTGTATGGAGGAGATAATAATTGATGGGTATCATATACCGAAGAAGGC AAGAATTATAGTGAATGCTTGGGGAATTGGACGAGATCCTGATGTTTGGT CAGATAATGCAGAAGAGTTTTTGCCAGAAAGATTTGCTGCGAAAAGTATA GACATTCGAGGACGTGATTTTGAGTTTCTCCCATTTGGTTCTGGGCGTAG AGGTTGCCCTGGAATGCAACTCGGATTAACTGTTGTTAGGCTTGTTATAG CTCAGCTAGTGCATTGCTTCAACTGGGAGCTCCCAGATGGCGTGTTGCCT GGTGAATTGGACATGAGTGAGGTATTTGGCCTGTCGTTGCCAAGAGCTAG CCATTTGGTCGTGGTGCCCAAGTATCGACTGGGTATTTGAAGTGCTTTGG AAGTTGAATTGTCAAATTTTAAGGCGAACCTTGTTCACT
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Coding sequence (CDS) from alignment at Chromosome01:1844673..1845361-

>Manes.01G010500.1.v6.1 ID=Manes.01G010500.1.v6.1|Name=Manes.01G010500.1|organism=Manihot esculenta|type=CDS|length=615bp|location=Sequence derived from alignment at Chromosome01:1844673..1845361- (Manihot esculenta)
ATGATCATAGGTTCATTTGACACTTCAGCTATTACCATTGAGTGGACACT
CACAGAACCCCTCAGACATCCTTCTGCAATGAAACGCCTGCAAGATGAAT
TGCAGAGTGTTGTTGGATTGGATAAAATGGTGGAGGAAAAAGATCTCTCC
AATCTTCCATATCTAGATATGGTTATAAAAGAAAGCTTGAGGTTACATCC
TGTTGGGCCACTTCTAATTCCTCGAAGCTGTATGGAGGAGATAATAATTG
ATGGGTATCATATACCGAAGAAGGCAAGAATTATAGTGAATGCTTGGGGA
ATTGGACGAGATCCTGATGTTTGGTCAGATAATGCAGAAGAGTTTTTGCC
AGAAAGATTTGCTGCGAAAAGTATAGACATTCGAGGACGTGATTTTGAGT
TTCTCCCATTTGGTTCTGGGCGTAGAGGTTGCCCTGGAATGCAACTCGGA
TTAACTGTTGTTAGGCTTGTTATAGCTCAGCTAGTGCATTGCTTCAACTG
GGAGCTCCCAGATGGCGTGTTGCCTGGTGAATTGGACATGAGTGAGGTAT
TTGGCCTGTCGTTGCCAAGAGCTAGCCATTTGGTCGTGGTGCCCAAGTAT
CGACTGGGTATTTGA
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