Manes.01G009300.1.v6.1 (mRNA)

Overview
NameManes.01G009300.1
Unique NameManes.01G009300.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length2944
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:1587471..1590414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32358031
Longest1
AncestorIdentifiercassava4.1_033848m.v4.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G009300Manes.01G009300.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G009300.1Manes.01G009300.1.v6.1-proteinManihot esculentapolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G009300.1.v6.1.three_prime_UTR.2Manes.01G009300.1.v6.1.three_prime_UTR.2Manihot esculentathree_prime_UTR
Manes.01G009300.1.v6.1.three_prime_UTR.1Manes.01G009300.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G009300.1.v6.1.five_prime_UTR.1Manes.01G009300.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G009300.1.v6.1.CDS.1Manes.01G009300.1.v6.1.CDS.1Manihot esculentaCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G009300.1.v6.1 ID=Manes.01G009300.1.v6.1|Name=Manes.01G009300.1|organism=Manihot esculenta|type=mRNA|length=2944bp
ACTACCTAATTGGCTTTCCTTGCAGCAAAAGAACTTAATTCATTGCCTCC
ATGTCTGAAGCTTATGCAGTAATTTCCACCTCCTCTCAGTAACTGCTGTT
GTTTCTGGATTTCCATGGCCAACTTTTGTAGGTAAAGGCCCTACCACTGT
CTTTGGAGGAATTTCTTGGGACAAGACTTGTAGGTCTCCCATAGCCAGCT
TTTATAGCCCATTACCTCTGCTAGTTCAGGATTTTGATCGGTTTAGCATC
ATTTTCATTCACACTGCCAATCTGATTCCTGGGAGGCAAAAGCTGTGAAA
TCTAAATTGAAGATTCAAGTGCATACAACTTTACAATCAAGTAAGAAATG
TTAAAAACATTGAAACAATATTACACTTAAACATTGATCAACACAACGGA
ACAAAATCAAAATCCCCTTTTCTATAAGAGTATAGTGAGACACAGTTTAT
AGCTAATTGCTGTATAGATTGTTATGACAACATATTGCTCAAAAATGAAT
TCAGTTACTTATACTGTATGGATGTTGTGGGGCTATCCAATTAATAAATT
GAAAAAGTTGAACTCTTCAGAAGGATAATGCATCTGCTTCTTCCATAGTC
AGTAAAATAATAGATACCAACTGTCAGCTGTCAACAGCTATAATTACAGT
ATCCATTGAGATCAACATCATCACTCAAAGAATCTAAGCTAGCAATATAG
TCCAACCACTTGATTTCCTCCATCAATTCTGCCAACCTCTGATACATCTC
TTTGCAATGGGGGTGGGATCGATCATCGGCAATGAAAGCATGAACCTCAT
TATTAACCTCTATCCAACTCCACCCAGGAACCTTCTTCACCTTTCTCTCC
CTCATCAACCTAGTCATGCAGGCTTTGTCATCCCACCTCTTAAGACGTCC
ATACATGTTAGAGAGGATAATATAAGTGCAATGCTCTTCAGGCTCTAGCT
CCAGCAGATGGTTTGCTACCTGAGCAGCTAATTCTATATCTCCACATGCC
CTACAGGCACCTAATAAGGTTTTCCAGACCATTGCATCAGGTTTAAATGG
CATTGATTCAACCAAGGCTTTTGCCTCATCTAGATGCCCAGCCCGCCCAA
ATAGATCAATTGCACAAGCATAATGCTCCATCCGAGGTGGAATCCCATAA
TCAGATGCCATAGATTTTAGAAAATAGCGGCCCTCTTCAACTAATCCAGT
GTGGCTACATGCAGTCAGCACCGCAACAAAACTTATATGATCCACCTTCA
CCTTCCTTTCTCTCATTTGGAAAAAGAGGTTCAGTGCAACATCACCCTGT
CCATGCTGCCCATATGCAAACATAATGGAATTCCAAGTAATTGAGCTATC
CCTTGTAGAGTCTTCAAAAGATTTGTGAGCATCTTCAATTATCCCACATT
TAGAGTACATATTAATCAATGAACTGGCGACAAAGTCATTCAGCTCAAAG
CCCGACTTAAATGTCAAGACATGAATTTGTTGTCCTAGTTGAAGAGTTGC
TAAATCTGAGCAAGATCTTAGGACTGCCGAGAAGGCATAGTGATCAATTT
CCACTGCTGAATATCTCATATGCCTAAAGAATTCCGGGGCATCTTCACTA
AATCCAATTTGTGAGAATCCTGTCAAAATGGAATTCCAGGAGACACGGTC
CTTAGACTCCATGGAGTGAAATACAATTAATGCATCTTCCACAGATTTAT
TACTTGAATCAAGATACATAGCTATCACTGCATTACAGATAGGCACTGAT
TGTTCCAGTCCCCTCTTGATAACCAAGCCATGGAAGGATCTCCCTTGGCC
TTTGTGGGAACAAGCACTTATGATGCTAGTGTAAGTATAGATGTCTGGCT
CAAACCCAGACTGTTGCATGTCAAGGAATAGTCTAAATGCAATTTTTTCC
CTACCATGTACCAGGTATGCTGCTAACATGGAATTCCATGTAACCAAATC
TCGGGTGCCAACAGTACCATCAAAAACTCTTTTTGCATCCTCTAATGAAC
CACATTCTGAATATGAAGTGATCGTGGCGTTGCACACATTGTTATCAAAC
TCTACACCACGTTTTATTATCTTACAGTGAAGCTGCATTGTTGACTTGCA
GAACTTATCTTCATTAAGCAAGGTAAGAAGCGGAGAAAATGTTCCATCAT
CAAGTCTAACTCCCTCCTCCTCCATGCAATGGAATAGCCAAAATGCAGTG
TCACGATTACCCTCTTGCACAAAGGCAGCAATAAGTGCATTCCATGAGAC
CGAATTGCGCTGTGGCATGCGCTGAAACACCAAGAATGCATCTTCAACTC
TCTTACACTTAGCGTACATGTCCAATAGAGCACTCCCTGCATAAACATTC
TCCTCGTAACCCATCTTGACTATCAAGGAATGCATTTGTTGCCCAAGATC
AGGTCTACAAGCACAAGCAACCCCCTTGAGTATACTTCCAAAGGCATACG
CATCAGTATTAAACCCACATCTTTTCATAACTTTATGCAACTCCCAAGCA
GCTTCGCAGTTCCCAGAGTTCACATGTCCAGCAATCATTGTGTTCCAAGT
AACGGTATCCCTGTGGGCCATTTCGTCGAACAGCTTGGAAGCAAGAACAA
TTCCTCCATAGCTGCATCTCGTGTAGTGACTGAGGATATTGTTGGCAGTG
TAAATATCAGTAAGGAGTCCCAATTTGATCGTCCGGCAATGGGTTATAAA
TATGCTATACAAAGCATAGCCGGAGCTCTCAATGACGGAATTCAATGGAC
TCATTCATTTATGGTTAACAACCATCACATTTATCGCCGGATGAAACAAA
CGGTAACTATTTGTTTGATTCGAGGAAAGTGAGAGCAAATGACGTGAAAC
TGCTCGGTAATGCACGAACTGATTCCCTATTGAATCAAGGAAAATTTACA
AATTCATTTTTGAGAATAACAAATTAGTCCCTTACTTTTGAAGA
back to top

mRNA from alignment at Chromosome01:1587471..1590414-

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G009300.1.v6.1 ID=Manes.01G009300.1.v6.1|Name=Manes.01G009300.1|organism=Manihot esculenta|type=mRNA|length=2944bp|location=Sequence derived from alignment at Chromosome01:1587471..1590414- (Manihot esculenta)
TCTTCAAAAGTAAGGGACTAATTTGTTATTCTCAAAAATGAATTTGTAAA TTTTCCTTGATTCAATAGGGAATCAGTTCGTGCATTACCGAGCAGTTTCA CGTCATTTGCTCTCACTTTCCTCGAATCAAACAAATAGTTACCGTTTGTT TCATCCGGCGATAAATGTGATGGTTGTTAACCATAAATGAATGAGTCCAT TGAATTCCGTCATTGAGAGCTCCGGCTATGCTTTGTATAGCATATTTATA ACCCATTGCCGGACGATCAAATTGGGACTCCTTACTGATATTTACACTGC CAACAATATCCTCAGTCACTACACGAGATGCAGCTATGGAGGAATTGTTC TTGCTTCCAAGCTGTTCGACGAAATGGCCCACAGGGATACCGTTACTTGG AACACAATGATTGCTGGACATGTGAACTCTGGGAACTGCGAAGCTGCTTG GGAGTTGCATAAAGTTATGAAAAGATGTGGGTTTAATACTGATGCGTATG CCTTTGGAAGTATACTCAAGGGGGTTGCTTGTGCTTGTAGACCTGATCTT GGGCAACAAATGCATTCCTTGATAGTCAAGATGGGTTACGAGGAGAATGT TTATGCAGGGAGTGCTCTATTGGACATGTACGCTAAGTGTAAGAGAGTTG AAGATGCATTCTTGGTGTTTCAGCGCATGCCACAGCGCAATTCGGTCTCA TGGAATGCACTTATTGCTGCCTTTGTGCAAGAGGGTAATCGTGACACTGC ATTTTGGCTATTCCATTGCATGGAGGAGGAGGGAGTTAGACTTGATGATG GAACATTTTCTCCGCTTCTTACCTTGCTTAATGAAGATAAGTTCTGCAAG TCAACAATGCAGCTTCACTGTAAGATAATAAAACGTGGTGTAGAGTTTGA TAACAATGTGTGCAACGCCACGATCACTTCATATTCAGAATGTGGTTCAT TAGAGGATGCAAAAAGAGTTTTTGATGGTACTGTTGGCACCCGAGATTTG GTTACATGGAATTCCATGTTAGCAGCATACCTGGTACATGGTAGGGAAAA AATTGCATTTAGACTATTCCTTGACATGCAACAGTCTGGGTTTGAGCCAG ACATCTATACTTACACTAGCATCATAAGTGCTTGTTCCCACAAAGGCCAA GGGAGATCCTTCCATGGCTTGGTTATCAAGAGGGGACTGGAACAATCAGT GCCTATCTGTAATGCAGTGATAGCTATGTATCTTGATTCAAGTAATAAAT CTGTGGAAGATGCATTAATTGTATTTCACTCCATGGAGTCTAAGGACCGT GTCTCCTGGAATTCCATTTTGACAGGATTCTCACAAATTGGATTTAGTGA AGATGCCCCGGAATTCTTTAGGCATATGAGATATTCAGCAGTGGAAATTG ATCACTATGCCTTCTCGGCAGTCCTAAGATCTTGCTCAGATTTAGCAACT CTTCAACTAGGACAACAAATTCATGTCTTGACATTTAAGTCGGGCTTTGA GCTGAATGACTTTGTCGCCAGTTCATTGATTAATATGTACTCTAAATGTG GGATAATTGAAGATGCTCACAAATCTTTTGAAGACTCTACAAGGGATAGC TCAATTACTTGGAATTCCATTATGTTTGCATATGGGCAGCATGGACAGGG TGATGTTGCACTGAACCTCTTTTTCCAAATGAGAGAAAGGAAGGTGAAGG TGGATCATATAAGTTTTGTTGCGGTGCTGACTGCATGTAGCCACACTGGA TTAGTTGAAGAGGGCCGCTATTTTCTAAAATCTATGGCATCTGATTATGG GATTCCACCTCGGATGGAGCATTATGCTTGTGCAATTGATCTATTTGGGC GGGCTGGGCATCTAGATGAGGCAAAAGCCTTGGTTGAATCAATGCCATTT AAACCTGATGCAATGGTCTGGAAAACCTTATTAGGTGCCTGTAGGGCATG TGGAGATATAGAATTAGCTGCTCAGGTAGCAAACCATCTGCTGGAGCTAG AGCCTGAAGAGCATTGCACTTATATTATCCTCTCTAACATGTATGGACGT CTTAAGAGGTGGGATGACAAAGCCTGCATGACTAGGTTGATGAGGGAGAG AAAGGTGAAGAAGGTTCCTGGGTGGAGTTGGATAGAGGTTAATAATGAGG TTCATGCTTTCATTGCCGATGATCGATCCCACCCCCATTGCAAAGAGATG TATCAGAGGTTGGCAGAATTGATGGAGGAAATCAAGTGGTTGGACTATAT TGCTAGCTTAGATTCTTTGAGTGATGATGTTGATCTCAATGGATACTGTA ATTATAGCTGTTGACAGCTGACAGTTGGTATCTATTATTTTACTGACTAT GGAAGAAGCAGATGCATTATCCTTCTGAAGAGTTCAACTTTTTCAATTTA TTAATTGGATAGCCCCACAACATCCATACAGTATAAGTAACTGAATTCAT TTTTGAGCAATATGTTGTCATAACAATCTATACAGCAATTAGCTATAAAC TGTGTCTCACTATACTCTTATAGAAAAGGGGATTTTGATTTTGTTCCGTT GTGTTGATCAATGTTTAAGTGTAATATTGTTTCAATGTTTTTAACATTTC TTACTTGATTGTAAAGTTGTATGCACTTGAATCTTCAATTTAGATTTCAC AGCTTTTGCCTCCCAGGAATCAGATTGGCAGTGTGAATGAAAATGATGCT AAACCGATCAAAATCCTGAACTAGCAGAGGTAATGGGCTATAAAAGCTGG CTATGGGAGACCTACAAGTCTTGTCCCAAGAAATTCCTCCAAAGACAGTG GTAGGGCCTTTACCTACAAAAGTTGGCCATGGAAATCCAGAAACAACAGC AGTTACTGAGAGGAGGTGGAAATTACTGCATAAGCTTCAGACATGGAGGC AATGAATTAAGTTCTTTTGCTGCAAGGAAAGCCAATTAGGTAGT
back to top

Coding sequence (CDS) from alignment at Chromosome01:1587471..1590414-

>Manes.01G009300.1.v6.1 ID=Manes.01G009300.1.v6.1|Name=Manes.01G009300.1|organism=Manihot esculenta|type=CDS|length=2124bp|location=Sequence derived from alignment at Chromosome01:1587471..1590414- (Manihot esculenta)
ATGAGTCCATTGAATTCCGTCATTGAGAGCTCCGGCTATGCTTTGTATAG
CATATTTATAACCCATTGCCGGACGATCAAATTGGGACTCCTTACTGATA
TTTACACTGCCAACAATATCCTCAGTCACTACACGAGATGCAGCTATGGA
GGAATTGTTCTTGCTTCCAAGCTGTTCGACGAAATGGCCCACAGGGATAC
CGTTACTTGGAACACAATGATTGCTGGACATGTGAACTCTGGGAACTGCG
AAGCTGCTTGGGAGTTGCATAAAGTTATGAAAAGATGTGGGTTTAATACT
GATGCGTATGCCTTTGGAAGTATACTCAAGGGGGTTGCTTGTGCTTGTAG
ACCTGATCTTGGGCAACAAATGCATTCCTTGATAGTCAAGATGGGTTACG
AGGAGAATGTTTATGCAGGGAGTGCTCTATTGGACATGTACGCTAAGTGT
AAGAGAGTTGAAGATGCATTCTTGGTGTTTCAGCGCATGCCACAGCGCAA
TTCGGTCTCATGGAATGCACTTATTGCTGCCTTTGTGCAAGAGGGTAATC
GTGACACTGCATTTTGGCTATTCCATTGCATGGAGGAGGAGGGAGTTAGA
CTTGATGATGGAACATTTTCTCCGCTTCTTACCTTGCTTAATGAAGATAA
GTTCTGCAAGTCAACAATGCAGCTTCACTGTAAGATAATAAAACGTGGTG
TAGAGTTTGATAACAATGTGTGCAACGCCACGATCACTTCATATTCAGAA
TGTGGTTCATTAGAGGATGCAAAAAGAGTTTTTGATGGTACTGTTGGCAC
CCGAGATTTGGTTACATGGAATTCCATGTTAGCAGCATACCTGGTACATG
GTAGGGAAAAAATTGCATTTAGACTATTCCTTGACATGCAACAGTCTGGG
TTTGAGCCAGACATCTATACTTACACTAGCATCATAAGTGCTTGTTCCCA
CAAAGGCCAAGGGAGATCCTTCCATGGCTTGGTTATCAAGAGGGGACTGG
AACAATCAGTGCCTATCTGTAATGCAGTGATAGCTATGTATCTTGATTCA
AGTAATAAATCTGTGGAAGATGCATTAATTGTATTTCACTCCATGGAGTC
TAAGGACCGTGTCTCCTGGAATTCCATTTTGACAGGATTCTCACAAATTG
GATTTAGTGAAGATGCCCCGGAATTCTTTAGGCATATGAGATATTCAGCA
GTGGAAATTGATCACTATGCCTTCTCGGCAGTCCTAAGATCTTGCTCAGA
TTTAGCAACTCTTCAACTAGGACAACAAATTCATGTCTTGACATTTAAGT
CGGGCTTTGAGCTGAATGACTTTGTCGCCAGTTCATTGATTAATATGTAC
TCTAAATGTGGGATAATTGAAGATGCTCACAAATCTTTTGAAGACTCTAC
AAGGGATAGCTCAATTACTTGGAATTCCATTATGTTTGCATATGGGCAGC
ATGGACAGGGTGATGTTGCACTGAACCTCTTTTTCCAAATGAGAGAAAGG
AAGGTGAAGGTGGATCATATAAGTTTTGTTGCGGTGCTGACTGCATGTAG
CCACACTGGATTAGTTGAAGAGGGCCGCTATTTTCTAAAATCTATGGCAT
CTGATTATGGGATTCCACCTCGGATGGAGCATTATGCTTGTGCAATTGAT
CTATTTGGGCGGGCTGGGCATCTAGATGAGGCAAAAGCCTTGGTTGAATC
AATGCCATTTAAACCTGATGCAATGGTCTGGAAAACCTTATTAGGTGCCT
GTAGGGCATGTGGAGATATAGAATTAGCTGCTCAGGTAGCAAACCATCTG
CTGGAGCTAGAGCCTGAAGAGCATTGCACTTATATTATCCTCTCTAACAT
GTATGGACGTCTTAAGAGGTGGGATGACAAAGCCTGCATGACTAGGTTGA
TGAGGGAGAGAAAGGTGAAGAAGGTTCCTGGGTGGAGTTGGATAGAGGTT
AATAATGAGGTTCATGCTTTCATTGCCGATGATCGATCCCACCCCCATTG
CAAAGAGATGTATCAGAGGTTGGCAGAATTGATGGAGGAAATCAAGTGGT
TGGACTATATTGCTAGCTTAGATTCTTTGAGTGATGATGTTGATCTCAAT
GGATACTGTAATTATAGCTGTTGA
back to top