Manes.01G009100.1.v6.1 (mRNA)

Overview


Name	Manes.01G009100.1
Unique Name	Manes.01G009100.1.v6.1
Type	mRNA
Organism	Manihot esculenta (Cassava)
Sequence length	1783

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chromosome01	chromosome	Chromosome01:1564326..1566108 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)	2015-07-22

Properties


Property Name	Value
Pacid	32357095
Longest	1
AncestorIdentifier	cassava4.1_007602m.v4.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Manes.01G009100	Manes.01G009100.v6.1	Manihot esculenta	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G009100.1	Manes.01G009100.1.v6.1-protein	Manihot esculenta	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G009100.1.v6.1.five_prime_UTR.1	Manes.01G009100.1.v6.1.five_prime_UTR.1	Manihot esculenta	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G009100.1.v6.1.CDS.1	Manes.01G009100.1.v6.1.CDS.1	Manihot esculenta	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G009100.1.v6.1.three_prime_UTR.1	Manes.01G009100.1.v6.1.three_prime_UTR.1	Manihot esculenta	three_prime_UTR

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA from alignment at Chromosome01:1564326..1566108-
coding sequnece from alignment at Chromosome01:1564326..1566108-

mRNA sequence

>Manes.01G009100.1.v6.1 ID=Manes.01G009100.1.v6.1|Name=Manes.01G009100.1|organism=Manihot esculenta|type=mRNA|length=1783bp
AGTAATTTACTATTTTCTTTTTTCTCAAAAGCAATTTTGGTGGTGAGTGG
GAAGAAACATACTATGCCCTACCTCAATATTTTCTTTGATTTTTAAGTAC
ATCATATTGCTAGTTTTACTTGGATCTATTAGGGTTTTGTCTTCCATCTA
TTTGATTAGCAAAATAACATTGCAGCACACACCATCAGCAATAGCTTCAT
ATGCTTTTAACACTCTTCACTACCTTAAAATATATCAAAAAGCTCTCTCA
TCTCATGAAACCCAAGTGAATAAGCAAATTCCTCTAACCTCAGATGGTGA
CATAACAAACTGAGAATGGAAACCCAGAAAATCCTGCAGGAGTGTGGATA
TGGTTCCACTTGGTTGTGCCATTACTGCAATCACTCTCCAAGATGAATGC
TCCTTCATAATCACATTCATTACATGAACATGATTTTGATGATGGTGATC
TCCTGACACTGCCACTCATCACAAACACACTGTGATTATTATTATTATTA
TTAACCTTATCATCATCATCTCCAAGGCTGATCATACAGGGATTTGTTCC
AGTTATACGCTCTGGAAGTAGAATTGAATTCACTATTTCCCATCTCATGT
TCTCAGTTCCCTTCATTTCTCCACAGATTCTTCTCTGCTGATGTAATTGT
TGTTGCTCTCCTCCGAAGAACCACCACCGTTGGAATTGATTTCTGTTTAT
ACTAACCATGGCGGTGGCGCCTCTGGGGCTAGTACTTGAAAAGGGCCAAA
ACCCATCAACCTTGGACCATGACTCTGTATCTGGGTCATAGAACTCGGCA
TCGGACCTGAACTGCCCTTGGGTCTCTGTGCCATAACCACTCACAACCCA
GAACCTGGAATCGCCGTCCCAGGCCAGCCCCTGACATTCGTCCCTCTCTT
CAATCATATCCGGTAGCTTTCTCCATTCGTTTTTATCAACATCATAAACC
TCCGCCGATCGTAAGGCGTTCTTCTGACTGTCGTGGCCTCCGGCCACAAA
AACTTTGGATGGTCCAACCAAGGCACAAGCGAAAAACGAGCGTGACACAG
ACATTGACGCCCCACGTCTCCACCTGCAGCCATCAGCCCCAGTGAGATCC
ACGATGTAAACATCGGGGACAGGTTCTAGAGTGGTGGGATCCCAGCCGCC
CAAAAGGAGTACTTTCCCCGACGATGGCAGCGCCAAACACTGACAAAACA
TGGGGATCCCTCCCTGAGGCCTTGTCCTTTGCCAAATATCGTGGGTGGCG
TTGTAGATGCTCAAAGCAAACTGCGGTGAGCTCTGGATCTGCTTCTCTTC
CTTACTGGTTACAGCAGCAGCGGTGGCGGTGGCGGAGGCAGTGGTGAGTG
AATCAGTGGAATCCAACTGGGGAAGAGGCTGGACAAGACACACAAGACGC
TCAGAAGAACCAGATTTGAGCCTCTGTTGATAAAAAAAAGGATGGGAAAT
CAATTTTTGCCAAGAATGGCAAACTGATTTCATATTAGAATGGAATTGAT
AAGGGACTCTGATCAGACACTCCATGGCTATTTCATCTGGCAGACCTGGA
ATCAACTGCAACTCTTCTTCTTGACATGAGGATTCAGAGACAATCTGGGA
TTTATTAACACAAGTGTTCTGTTCTTCTCCCATGTTTCTGAAAACCCACC
AAAGATTGAAGGGGAAGATGTTAAAGAAATGCAAGAGTAGCAAGAATCCT
GGAGATATATGAAGCTTGTGTGAATGAAATTAGGAGGGATGAGCTGAGAA
TCAAATTCAAAATCTGTGGAAGAATGAGAAATT

mRNA from alignment at Chromosome01:1564326..1566108-

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Manes.01G009100.1.v6.1 ID=Manes.01G009100.1.v6.1|Name=Manes.01G009100.1|organism=Manihot esculenta|type=mRNA|length=1783bp|location=Sequence derived from alignment at Chromosome01:1564326..1566108- (Manihot esculenta)
AATTTCTCATTCTTCCACAGATTTTGAATTTGATTCTCAGCTCATCCCTC
CTAATTTCATTCACACAAGCTTCATATATCTCCAGGATTCTTGCTACTCT
TGCATTTCTTTAACATCTTCCCCTTCAATCTTTGGTGGGTTTTCAGAAAC
ATGGGAGAAGAACAGAACACTTGTGTTAATAAATCCCAGATTGTCTCTGA
ATCCTCATGTCAAGAAGAAGAGTTGCAGTTGATTCCAGGTCTGCCAGATG
AAATAGCCATGGAGTGTCTGATCAGAGTCCCTTATCAATTCCATTCTAAT
ATGAAATCAGTTTGCCATTCTTGGCAAAAATTGATTTCCCATCCTTTTTT
TTATCAACAGAGGCTCAAATCTGGTTCTTCTGAGCGTCTTGTGTGTCTTG
TCCAGCCTCTTCCCCAGTTGGATTCCACTGATTCACTCACCACTGCCTCC
GCCACCGCCACCGCTGCTGCTGTAACCAGTAAGGAAGAGAAGCAGATCCA
GAGCTCACCGCAGTTTGCTTTGAGCATCTACAACGCCACCCACGATATTT
GGCAAAGGACAAGGCCTCAGGGAGGGATCCCCATGTTTTGTCAGTGTTTG
GCGCTGCCATCGTCGGGGAAAGTACTCCTTTTGGGCGGCTGGGATCCCAC
CACTCTAGAACCTGTCCCCGATGTTTACATCGTGGATCTCACTGGGGCTG
ATGGCTGCAGGTGGAGACGTGGGGCGTCAATGTCTGTGTCACGCTCGTTT
TTCGCTTGTGCCTTGGTTGGACCATCCAAAGTTTTTGTGGCCGGAGGCCA
CGACAGTCAGAAGAACGCCTTACGATCGGCGGAGGTTTATGATGTTGATA
AAAACGAATGGAGAAAGCTACCGGATATGATTGAAGAGAGGGACGAATGT
CAGGGGCTGGCCTGGGACGGCGATTCCAGGTTCTGGGTTGTGAGTGGTTA
TGGCACAGAGACCCAAGGGCAGTTCAGGTCCGATGCCGAGTTCTATGACC
CAGATACAGAGTCATGGTCCAAGGTTGATGGGTTTTGGCCCTTTTCAAGT
ACTAGCCCCAGAGGCGCCACCGCCATGGTTAGTATAAACAGAAATCAATT
CCAACGGTGGTGGTTCTTCGGAGGAGAGCAACAACAATTACATCAGCAGA
GAAGAATCTGTGGAGAAATGAAGGGAACTGAGAACATGAGATGGGAAATA
GTGAATTCAATTCTACTTCCAGAGCGTATAACTGGAACAAATCCCTGTAT
GATCAGCCTTGGAGATGATGATGATAAGGTTAATAATAATAATAATAATC
ACAGTGTGTTTGTGATGAGTGGCAGTGTCAGGAGATCACCATCATCAAAA
TCATGTTCATGTAATGAATGTGATTATGAAGGAGCATTCATCTTGGAGAG
TGATTGCAGTAATGGCACAACCAAGTGGAACCATATCCACACTCCTGCAG
GATTTTCTGGGTTTCCATTCTCAGTTTGTTATGTCACCATCTGAGGTTAG
AGGAATTTGCTTATTCACTTGGGTTTCATGAGATGAGAGAGCTTTTTGAT
ATATTTTAAGGTAGTGAAGAGTGTTAAAAGCATATGAAGCTATTGCTGAT
GGTGTGTGCTGCAATGTTATTTTGCTAATCAAATAGATGGAAGACAAAAC
CCTAATAGATCCAAGTAAAACTAGCAATATGATGTACTTAAAAATCAAAG
AAAATATTGAGGTAGGGCATAGTATGTTTCTTCCCACTCACCACCAAAAT
TGCTTTTGAGAAAAAAGAAAATAGTAAATTACT

Coding sequence (CDS) from alignment at Chromosome01:1564326..1566108-

>Manes.01G009100.1.v6.1 ID=Manes.01G009100.1.v6.1|Name=Manes.01G009100.1|organism=Manihot esculenta|type=CDS|length=1344bp|location=Sequence derived from alignment at Chromosome01:1564326..1566108- (Manihot esculenta)
ATGGGAGAAGAACAGAACACTTGTGTTAATAAATCCCAGATTGTCTCTGA
ATCCTCATGTCAAGAAGAAGAGTTGCAGTTGATTCCAGGTCTGCCAGATG
AAATAGCCATGGAGTGTCTGATCAGAGTCCCTTATCAATTCCATTCTAAT
ATGAAATCAGTTTGCCATTCTTGGCAAAAATTGATTTCCCATCCTTTTTT
TTATCAACAGAGGCTCAAATCTGGTTCTTCTGAGCGTCTTGTGTGTCTTG
TCCAGCCTCTTCCCCAGTTGGATTCCACTGATTCACTCACCACTGCCTCC
GCCACCGCCACCGCTGCTGCTGTAACCAGTAAGGAAGAGAAGCAGATCCA
GAGCTCACCGCAGTTTGCTTTGAGCATCTACAACGCCACCCACGATATTT
GGCAAAGGACAAGGCCTCAGGGAGGGATCCCCATGTTTTGTCAGTGTTTG
GCGCTGCCATCGTCGGGGAAAGTACTCCTTTTGGGCGGCTGGGATCCCAC
CACTCTAGAACCTGTCCCCGATGTTTACATCGTGGATCTCACTGGGGCTG
ATGGCTGCAGGTGGAGACGTGGGGCGTCAATGTCTGTGTCACGCTCGTTT
TTCGCTTGTGCCTTGGTTGGACCATCCAAAGTTTTTGTGGCCGGAGGCCA
CGACAGTCAGAAGAACGCCTTACGATCGGCGGAGGTTTATGATGTTGATA
AAAACGAATGGAGAAAGCTACCGGATATGATTGAAGAGAGGGACGAATGT
CAGGGGCTGGCCTGGGACGGCGATTCCAGGTTCTGGGTTGTGAGTGGTTA
TGGCACAGAGACCCAAGGGCAGTTCAGGTCCGATGCCGAGTTCTATGACC
CAGATACAGAGTCATGGTCCAAGGTTGATGGGTTTTGGCCCTTTTCAAGT
ACTAGCCCCAGAGGCGCCACCGCCATGGTTAGTATAAACAGAAATCAATT
CCAACGGTGGTGGTTCTTCGGAGGAGAGCAACAACAATTACATCAGCAGA
GAAGAATCTGTGGAGAAATGAAGGGAACTGAGAACATGAGATGGGAAATA
GTGAATTCAATTCTACTTCCAGAGCGTATAACTGGAACAAATCCCTGTAT
GATCAGCCTTGGAGATGATGATGATAAGGTTAATAATAATAATAATAATC
ACAGTGTGTTTGTGATGAGTGGCAGTGTCAGGAGATCACCATCATCAAAA
TCATGTTCATGTAATGAATGTGATTATGAAGGAGCATTCATCTTGGAGAG
TGATTGCAGTAATGGCACAACCAAGTGGAACCATATCCACACTCCTGCAG
GATTTTCTGGGTTTCCATTCTCAGTTTGTTATGTCACCATCTGA