Manes.01G009100.1.v6.1 (mRNA)

Overview
NameManes.01G009100.1
Unique NameManes.01G009100.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length1783
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:1564326..1566108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32357095
Longest1
AncestorIdentifiercassava4.1_007602m.v4.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G009100Manes.01G009100.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G009100.1Manes.01G009100.1.v6.1-proteinManihot esculentapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G009100.1.v6.1.five_prime_UTR.1Manes.01G009100.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G009100.1.v6.1.CDS.1Manes.01G009100.1.v6.1.CDS.1Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G009100.1.v6.1.three_prime_UTR.1Manes.01G009100.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G009100.1.v6.1 ID=Manes.01G009100.1.v6.1|Name=Manes.01G009100.1|organism=Manihot esculenta|type=mRNA|length=1783bp
AGTAATTTACTATTTTCTTTTTTCTCAAAAGCAATTTTGGTGGTGAGTGG
GAAGAAACATACTATGCCCTACCTCAATATTTTCTTTGATTTTTAAGTAC
ATCATATTGCTAGTTTTACTTGGATCTATTAGGGTTTTGTCTTCCATCTA
TTTGATTAGCAAAATAACATTGCAGCACACACCATCAGCAATAGCTTCAT
ATGCTTTTAACACTCTTCACTACCTTAAAATATATCAAAAAGCTCTCTCA
TCTCATGAAACCCAAGTGAATAAGCAAATTCCTCTAACCTCAGATGGTGA
CATAACAAACTGAGAATGGAAACCCAGAAAATCCTGCAGGAGTGTGGATA
TGGTTCCACTTGGTTGTGCCATTACTGCAATCACTCTCCAAGATGAATGC
TCCTTCATAATCACATTCATTACATGAACATGATTTTGATGATGGTGATC
TCCTGACACTGCCACTCATCACAAACACACTGTGATTATTATTATTATTA
TTAACCTTATCATCATCATCTCCAAGGCTGATCATACAGGGATTTGTTCC
AGTTATACGCTCTGGAAGTAGAATTGAATTCACTATTTCCCATCTCATGT
TCTCAGTTCCCTTCATTTCTCCACAGATTCTTCTCTGCTGATGTAATTGT
TGTTGCTCTCCTCCGAAGAACCACCACCGTTGGAATTGATTTCTGTTTAT
ACTAACCATGGCGGTGGCGCCTCTGGGGCTAGTACTTGAAAAGGGCCAAA
ACCCATCAACCTTGGACCATGACTCTGTATCTGGGTCATAGAACTCGGCA
TCGGACCTGAACTGCCCTTGGGTCTCTGTGCCATAACCACTCACAACCCA
GAACCTGGAATCGCCGTCCCAGGCCAGCCCCTGACATTCGTCCCTCTCTT
CAATCATATCCGGTAGCTTTCTCCATTCGTTTTTATCAACATCATAAACC
TCCGCCGATCGTAAGGCGTTCTTCTGACTGTCGTGGCCTCCGGCCACAAA
AACTTTGGATGGTCCAACCAAGGCACAAGCGAAAAACGAGCGTGACACAG
ACATTGACGCCCCACGTCTCCACCTGCAGCCATCAGCCCCAGTGAGATCC
ACGATGTAAACATCGGGGACAGGTTCTAGAGTGGTGGGATCCCAGCCGCC
CAAAAGGAGTACTTTCCCCGACGATGGCAGCGCCAAACACTGACAAAACA
TGGGGATCCCTCCCTGAGGCCTTGTCCTTTGCCAAATATCGTGGGTGGCG
TTGTAGATGCTCAAAGCAAACTGCGGTGAGCTCTGGATCTGCTTCTCTTC
CTTACTGGTTACAGCAGCAGCGGTGGCGGTGGCGGAGGCAGTGGTGAGTG
AATCAGTGGAATCCAACTGGGGAAGAGGCTGGACAAGACACACAAGACGC
TCAGAAGAACCAGATTTGAGCCTCTGTTGATAAAAAAAAGGATGGGAAAT
CAATTTTTGCCAAGAATGGCAAACTGATTTCATATTAGAATGGAATTGAT
AAGGGACTCTGATCAGACACTCCATGGCTATTTCATCTGGCAGACCTGGA
ATCAACTGCAACTCTTCTTCTTGACATGAGGATTCAGAGACAATCTGGGA
TTTATTAACACAAGTGTTCTGTTCTTCTCCCATGTTTCTGAAAACCCACC
AAAGATTGAAGGGGAAGATGTTAAAGAAATGCAAGAGTAGCAAGAATCCT
GGAGATATATGAAGCTTGTGTGAATGAAATTAGGAGGGATGAGCTGAGAA
TCAAATTCAAAATCTGTGGAAGAATGAGAAATT
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mRNA from alignment at Chromosome01:1564326..1566108-

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G009100.1.v6.1 ID=Manes.01G009100.1.v6.1|Name=Manes.01G009100.1|organism=Manihot esculenta|type=mRNA|length=1783bp|location=Sequence derived from alignment at Chromosome01:1564326..1566108- (Manihot esculenta)
AATTTCTCATTCTTCCACAGATTTTGAATTTGATTCTCAGCTCATCCCTC CTAATTTCATTCACACAAGCTTCATATATCTCCAGGATTCTTGCTACTCT TGCATTTCTTTAACATCTTCCCCTTCAATCTTTGGTGGGTTTTCAGAAAC ATGGGAGAAGAACAGAACACTTGTGTTAATAAATCCCAGATTGTCTCTGA ATCCTCATGTCAAGAAGAAGAGTTGCAGTTGATTCCAGGTCTGCCAGATG AAATAGCCATGGAGTGTCTGATCAGAGTCCCTTATCAATTCCATTCTAAT ATGAAATCAGTTTGCCATTCTTGGCAAAAATTGATTTCCCATCCTTTTTT TTATCAACAGAGGCTCAAATCTGGTTCTTCTGAGCGTCTTGTGTGTCTTG TCCAGCCTCTTCCCCAGTTGGATTCCACTGATTCACTCACCACTGCCTCC GCCACCGCCACCGCTGCTGCTGTAACCAGTAAGGAAGAGAAGCAGATCCA GAGCTCACCGCAGTTTGCTTTGAGCATCTACAACGCCACCCACGATATTT GGCAAAGGACAAGGCCTCAGGGAGGGATCCCCATGTTTTGTCAGTGTTTG GCGCTGCCATCGTCGGGGAAAGTACTCCTTTTGGGCGGCTGGGATCCCAC CACTCTAGAACCTGTCCCCGATGTTTACATCGTGGATCTCACTGGGGCTG ATGGCTGCAGGTGGAGACGTGGGGCGTCAATGTCTGTGTCACGCTCGTTT TTCGCTTGTGCCTTGGTTGGACCATCCAAAGTTTTTGTGGCCGGAGGCCA CGACAGTCAGAAGAACGCCTTACGATCGGCGGAGGTTTATGATGTTGATA AAAACGAATGGAGAAAGCTACCGGATATGATTGAAGAGAGGGACGAATGT CAGGGGCTGGCCTGGGACGGCGATTCCAGGTTCTGGGTTGTGAGTGGTTA TGGCACAGAGACCCAAGGGCAGTTCAGGTCCGATGCCGAGTTCTATGACC CAGATACAGAGTCATGGTCCAAGGTTGATGGGTTTTGGCCCTTTTCAAGT ACTAGCCCCAGAGGCGCCACCGCCATGGTTAGTATAAACAGAAATCAATT CCAACGGTGGTGGTTCTTCGGAGGAGAGCAACAACAATTACATCAGCAGA GAAGAATCTGTGGAGAAATGAAGGGAACTGAGAACATGAGATGGGAAATA GTGAATTCAATTCTACTTCCAGAGCGTATAACTGGAACAAATCCCTGTAT GATCAGCCTTGGAGATGATGATGATAAGGTTAATAATAATAATAATAATC ACAGTGTGTTTGTGATGAGTGGCAGTGTCAGGAGATCACCATCATCAAAA TCATGTTCATGTAATGAATGTGATTATGAAGGAGCATTCATCTTGGAGAG TGATTGCAGTAATGGCACAACCAAGTGGAACCATATCCACACTCCTGCAG GATTTTCTGGGTTTCCATTCTCAGTTTGTTATGTCACCATCTGAGGTTAG AGGAATTTGCTTATTCACTTGGGTTTCATGAGATGAGAGAGCTTTTTGAT ATATTTTAAGGTAGTGAAGAGTGTTAAAAGCATATGAAGCTATTGCTGAT GGTGTGTGCTGCAATGTTATTTTGCTAATCAAATAGATGGAAGACAAAAC CCTAATAGATCCAAGTAAAACTAGCAATATGATGTACTTAAAAATCAAAG AAAATATTGAGGTAGGGCATAGTATGTTTCTTCCCACTCACCACCAAAAT TGCTTTTGAGAAAAAAGAAAATAGTAAATTACT
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Coding sequence (CDS) from alignment at Chromosome01:1564326..1566108-

>Manes.01G009100.1.v6.1 ID=Manes.01G009100.1.v6.1|Name=Manes.01G009100.1|organism=Manihot esculenta|type=CDS|length=1344bp|location=Sequence derived from alignment at Chromosome01:1564326..1566108- (Manihot esculenta)
ATGGGAGAAGAACAGAACACTTGTGTTAATAAATCCCAGATTGTCTCTGA
ATCCTCATGTCAAGAAGAAGAGTTGCAGTTGATTCCAGGTCTGCCAGATG
AAATAGCCATGGAGTGTCTGATCAGAGTCCCTTATCAATTCCATTCTAAT
ATGAAATCAGTTTGCCATTCTTGGCAAAAATTGATTTCCCATCCTTTTTT
TTATCAACAGAGGCTCAAATCTGGTTCTTCTGAGCGTCTTGTGTGTCTTG
TCCAGCCTCTTCCCCAGTTGGATTCCACTGATTCACTCACCACTGCCTCC
GCCACCGCCACCGCTGCTGCTGTAACCAGTAAGGAAGAGAAGCAGATCCA
GAGCTCACCGCAGTTTGCTTTGAGCATCTACAACGCCACCCACGATATTT
GGCAAAGGACAAGGCCTCAGGGAGGGATCCCCATGTTTTGTCAGTGTTTG
GCGCTGCCATCGTCGGGGAAAGTACTCCTTTTGGGCGGCTGGGATCCCAC
CACTCTAGAACCTGTCCCCGATGTTTACATCGTGGATCTCACTGGGGCTG
ATGGCTGCAGGTGGAGACGTGGGGCGTCAATGTCTGTGTCACGCTCGTTT
TTCGCTTGTGCCTTGGTTGGACCATCCAAAGTTTTTGTGGCCGGAGGCCA
CGACAGTCAGAAGAACGCCTTACGATCGGCGGAGGTTTATGATGTTGATA
AAAACGAATGGAGAAAGCTACCGGATATGATTGAAGAGAGGGACGAATGT
CAGGGGCTGGCCTGGGACGGCGATTCCAGGTTCTGGGTTGTGAGTGGTTA
TGGCACAGAGACCCAAGGGCAGTTCAGGTCCGATGCCGAGTTCTATGACC
CAGATACAGAGTCATGGTCCAAGGTTGATGGGTTTTGGCCCTTTTCAAGT
ACTAGCCCCAGAGGCGCCACCGCCATGGTTAGTATAAACAGAAATCAATT
CCAACGGTGGTGGTTCTTCGGAGGAGAGCAACAACAATTACATCAGCAGA
GAAGAATCTGTGGAGAAATGAAGGGAACTGAGAACATGAGATGGGAAATA
GTGAATTCAATTCTACTTCCAGAGCGTATAACTGGAACAAATCCCTGTAT
GATCAGCCTTGGAGATGATGATGATAAGGTTAATAATAATAATAATAATC
ACAGTGTGTTTGTGATGAGTGGCAGTGTCAGGAGATCACCATCATCAAAA
TCATGTTCATGTAATGAATGTGATTATGAAGGAGCATTCATCTTGGAGAG
TGATTGCAGTAATGGCACAACCAAGTGGAACCATATCCACACTCCTGCAG
GATTTTCTGGGTTTCCATTCTCAGTTTGTTATGTCACCATCTGA
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