Manes.01G007000.1.v6.1 (mRNA)

Overview
NameManes.01G007000.1
Unique NameManes.01G007000.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length1121
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:1163960..1165080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32358883
Longest1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G007000Manes.01G007000.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G007000.1Manes.01G007000.1.v6.1-proteinManihot esculentapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G007000.1.v6.1.CDS.2Manes.01G007000.1.v6.1.CDS.2Manihot esculentaCDS
Manes.01G007000.1.v6.1.CDS.1Manes.01G007000.1.v6.1.CDS.1Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G007000.1.v6.1.three_prime_UTR.1Manes.01G007000.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G007000.1.v6.1.five_prime_UTR.1Manes.01G007000.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G007000.1.v6.1 ID=Manes.01G007000.1.v6.1|Name=Manes.01G007000.1|organism=Manihot esculenta|type=mRNA|length=1121bp
ACATTGAGGGATGTCTGGTCTAAAAATGACAGCTCCATTATTTTCAGCAT
TTTATGTGTTTGAAACCAAAAGGACAACAACAAATGTAAGTGCAAACTTA
GGAATTAGCCAGCTAATGCACCAAAAACTAAAACTCAAACATTATACAAC
TTCAGATAAAATATAATTACAGTTACTGATGTGAACCAAGAAATAAAGGA
AGACTTCGAGAGAAAAACAATCCTCCAGATCCATCCCAAGAACTATACAC
ACAAAAGAAAACAGTATCAGAAAATTTCACACCTCCGATGAAACACGCAA
ACACTTCAAAGGATCACGAAAGAATCAAACAATGGCGCAATTTTAGAAGC
GGGTCAGTCCTATACTGTAAATTCACCACGATCAGATGCAGGAAGAGTTC
CATATCTAGTTCCAAAATCTGAACCGATCAAAGATCTTGATGGAGCCTCT
TGTTCATCAGGAAATAACCCATCTGAGTTCTTCAAAACAGCATGAACCAC
ACATATCAAAACCCCTATAGCAAACCCCAACACCAAACTCCAAAAGCCGC
CGCTCAACCAAATCGCCAATAAAGAAATCAGAAGCAAACCTATAAAAACC
AGACGATCACTCAATTGATAGCCCCACAAGACTAACGGGTCTTCTCTGAA
GAAGTATAGGAGCAACCAGAGAGCGAAGATGAAACTGAATAAGATCAGTG
CAAATGGGGAACCGATGAGAGCCAGAGCACCACAGATGGAGACGACGATG
GCGTAGTTGATGTGAAAATAGCGAAGGTTAATGCGGAGGCGGCTCAGTCC
AGAAGCGAAGGAATCAGGGCGGTTGAAGGTTCCGGATGCTATGAGTTCAG
GCCAGGGGCGAAGGCGGGAGACGGTAGCGTTGAGATTCTGAAGTGAACGA
GAAATGACGTCGGCGGGAGAGATGAGAATGGTCGTATAGGTGGTCGCAAC
GGCGGGAGTAGCGGTTGTTGCAGGGGATTGCGACATTTTTTTTATTCAGA
CTCTTCTTTTGGAAGTTTGACCGACCGGTTTGACCACAACAACCCTTCAA
TTCACGGATTGAATTGATGGGCAAACAGCAAAATTCTCGAGTTATCGAGT
AAAAGAAAAAAATTCGTGGCA
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mRNA from alignment at Chromosome01:1163960..1165080-

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G007000.1.v6.1 ID=Manes.01G007000.1.v6.1|Name=Manes.01G007000.1|organism=Manihot esculenta|type=mRNA|length=1121bp|location=Sequence derived from alignment at Chromosome01:1163960..1165080- (Manihot esculenta)
TGCCACGAATTTTTTTCTTTTACTCGATAACTCGAGAATTTTGCTGTTTG CCCATCAATTCAATCCGTGAATTGAAGGGTTGTTGTGGTCAAACCGGTCG GTCAAACTTCCAAAAGAAGAGTCTGAATAAAAAAAATGTCGCAATCCCCT GCAACAACCGCTACTCCCGCCGTTGCGACCACCTATACGACCATTCTCAT CTCTCCCGCCGACGTCATTTCTCGTTCACTTCAGAATCTCAACGCTACCG TCTCCCGCCTTCGCCCCTGGCCTGAACTCATAGCATCCGGAACCTTCAAC CGCCCTGATTCCTTCGCTTCTGGACTGAGCCGCCTCCGCATTAACCTTCG CTATTTTCACATCAACTACGCCATCGTCGTCTCCATCTGTGGTGCTCTGG CTCTCATCGGTTCCCCATTTGCACTGATCTTATTCAGTTTCATCTTCGCT CTCTGGTTGCTCCTATACTTCTTCAGAGAAGACCCGTTAGTCTTGTGGGG CTATCAATTGAGTGATCGTCTGGTTTTTATAGGTTTGCTTCTGATTTCTT TATTGGCGATTTGGTTGAGCGGCGGCTTTTGGAGTTTGGTGTTGGGGTTT GCTATAGGGGTTTTGATATGTGTGGTTCATGCTGTTTTGAAGAACTCAGA TGGGTTATTTCCTGATGAACAAGAGGCTCCATCAAGATCTTTGATCGGTT CAGATTTTGGAACTAGATATGGAACTCTTCCTGCATCTGATCGTGGTGAA TTTACAGTATAGGACTGACCCGCTTCTAAAATTGCGCCATTGTTTGATTC TTTCGTGATCCTTTGAAGTGTTTGCGTGTTTCATCGGAGGTGTGAAATTT TCTGATACTGTTTTCTTTTGTGTGTATAGTTCTTGGGATGGATCTGGAGG ATTGTTTTTCTCTCGAAGTCTTCCTTTATTTCTTGGTTCACATCAGTAAC TGTAATTATATTTTATCTGAAGTTGTATAATGTTTGAGTTTTAGTTTTTG GTGCATTAGCTGGCTAATTCCTAAGTTTGCACTTACATTTGTTGTTGTCC TTTTGGTTTCAAACACATAAAATGCTGAAAATAATGGAGCTGTCATTTTT AGACCAGACATCCCTCAATGT
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Coding sequence (CDS) from alignment at Chromosome01:1163960..1165080-

>Manes.01G007000.1.v6.1 ID=Manes.01G007000.1.v6.1|Name=Manes.01G007000.1|organism=Manihot esculenta|type=CDS|length=420bp|location=Sequence derived from alignment at Chromosome01:1163960..1165080- (Manihot esculenta)
ATGTCGCAATCCCCTGCAACAACCGCTACTCCCGCCGTTGCGACCACCTA
TACGACCATTCTCATCTCTCCCGCCGACGTCATTTCTCGTTCACTTCAGA
ATCTCAACGCTACCGTCTCCCGCCTTCGCCCCTGGCCTGAACTCATAGCA
TCCGGAACCTTCAACCGCCCTGATTCCTTCGCTTCTGGACTGAGCCGCCT
CCGCATTAACCTTCGCTATTTTCACATCAACTACGCCATCGTCGTCTCCA
TCTGTGGTGCTCTGGCTCTCATCGGTTCCCCATTTGCACTGATCTTATTC
AGTTTCATCTTCGCTCTCTGGTTGCTCCTATACTTCTTCAGAGAAGACCC
GTTAGTCTTGTGGGGCTATCAATTGAGTGATCGTCTGGTTTTTATAGAAC
TCAGATGGGTTATTTCCTGA
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