Manes.01G006500.1.v6.1 (mRNA)

Overview
NameManes.01G006500.1
Unique NameManes.01G006500.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length1166
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:1148450..1149615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32357690
Longest1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G006500Manes.01G006500.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G006500.1Manes.01G006500.1.v6.1-proteinManihot esculentapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G006500.1.v6.1.five_prime_UTR.1Manes.01G006500.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G006500.1.v6.1.CDS.1Manes.01G006500.1.v6.1.CDS.1Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G006500.1.v6.1.three_prime_UTR.1Manes.01G006500.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G006500.1.v6.1 ID=Manes.01G006500.1.v6.1|Name=Manes.01G006500.1|organism=Manihot esculenta|type=mRNA|length=1166bp
CCAACCTAAGCGTATCCAACTTCCTGTATATTAAGCCCCCACGTCTCCTA
TATCAAAGAGTGCTCTCCTAGTCTCTGTATATCATGGATTCTGCTACTTC
ATCAGACAAGAAGCTGCTACTGCTCTCCATGGATAACAGCTGCTCTTCTG
TTTCTACTGAAGATTATTATGGTCAAGATCAAGAGCAAGAGCAAGTTCTA
CATCGTAGTCATCAAGAACATCCCTCTGAGGCTACAGCTATCAATCTCAA
GGATTCTCTCATTGCAGGAAGTTGGTCCACTACTCGGAAGAGAACATTCA
GTTTCGATTGCTGTTCTTCCTCTTCTTGTTTGAATCATGTGGATCAAAAG
ATTCTTGAAAGAATTCCCACCGTGATTTTTCTTAAATCTATGGGTTTTGC
CGAAAAGAATATATCAGATGTTTTGCGAGAGATGGGGAACAATAAGGTGA
AGCAAAAAGTTGAAGAGACGATGCAGCAGTGGTGTTCAGCGAACAACTCC
AACATTAGCTCGCAGGACTCGGTTGCTACTCCTATTGATAGAAGGAAGAA
GAGCTGTACTGATATGGGAATCGTTAAGAAGAAGAAGAAGAAGATGGATA
TCAAGCTAAAAAGCCTATCAGAATTGGTTGATTCCAAGGGTTCTTATGTA
TGCAAACAATGCAACAAGGTGTTTGATGATTTCCGTGCCCTTGGCGGCCA
TACAGCTGCTCACAACAGGAAGACGGCGGAGAATGAGCCGTCGGAGGAAT
TGGTAACCGGAGGAAGAGGTGTAAAAACTGGTCCGATTCCGGCAGAACTA
ACAGTTGATAACAGAGGAAAGAAATATGAGTGTAACCTGTGTTCAAGGCG
GTTTCCCACGGGGCAGGCTCTTGGAGGGCATAAATCCTATCACCGGAAGA
TGGCCTGTGGCGAAGTCCAAGAGGTTTCCACCGAAAGGTCTGCACCTGCA
AAATATGCAGATATAAAAATTGATTTGAATGCCCCTCCAGATGAGTTGGT
GTGGGGTGGTTAATCCATTAGGGTAGTGGTAGTACATAGTATTAGTTCAA
TTTTTTTGCTGGGGATAGAAATTCAGCCCCGTTTAATCTTTTGGGTGGTG
ATGCAAATATTATTGCTCAGATTTTTTGTGTTGATGGAGGCATTGATTTT
TTTTTTTTAGGATAAT
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mRNA from alignment at Chromosome01:1148450..1149615+

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G006500.1.v6.1 ID=Manes.01G006500.1.v6.1|Name=Manes.01G006500.1|organism=Manihot esculenta|type=mRNA|length=1166bp|location=Sequence derived from alignment at Chromosome01:1148450..1149615+ (Manihot esculenta)
CCAACCTAAGCGTATCCAACTTCCTGTATATTAAGCCCCCACGTCTCCTA TATCAAAGAGTGCTCTCCTAGTCTCTGTATATCATGGATTCTGCTACTTC ATCAGACAAGAAGCTGCTACTGCTCTCCATGGATAACAGCTGCTCTTCTG TTTCTACTGAAGATTATTATGGTCAAGATCAAGAGCAAGAGCAAGTTCTA CATCGTAGTCATCAAGAACATCCCTCTGAGGCTACAGCTATCAATCTCAA GGATTCTCTCATTGCAGGAAGTTGGTCCACTACTCGGAAGAGAACATTCA GTTTCGATTGCTGTTCTTCCTCTTCTTGTTTGAATCATGTGGATCAAAAG ATTCTTGAAAGAATTCCCACCGTGATTTTTCTTAAATCTATGGGTTTTGC CGAAAAGAATATATCAGATGTTTTGCGAGAGATGGGGAACAATAAGGTGA AGCAAAAAGTTGAAGAGACGATGCAGCAGTGGTGTTCAGCGAACAACTCC AACATTAGCTCGCAGGACTCGGTTGCTACTCCTATTGATAGAAGGAAGAA GAGCTGTACTGATATGGGAATCGTTAAGAAGAAGAAGAAGAAGATGGATA TCAAGCTAAAAAGCCTATCAGAATTGGTTGATTCCAAGGGTTCTTATGTA TGCAAACAATGCAACAAGGTGTTTGATGATTTCCGTGCCCTTGGCGGCCA TACAGCTGCTCACAACAGGAAGACGGCGGAGAATGAGCCGTCGGAGGAAT TGGTAACCGGAGGAAGAGGTGTAAAAACTGGTCCGATTCCGGCAGAACTA ACAGTTGATAACAGAGGAAAGAAATATGAGTGTAACCTGTGTTCAAGGCG GTTTCCCACGGGGCAGGCTCTTGGAGGGCATAAATCCTATCACCGGAAGA TGGCCTGTGGCGAAGTCCAAGAGGTTTCCACCGAAAGGTCTGCACCTGCA AAATATGCAGATATAAAAATTGATTTGAATGCCCCTCCAGATGAGTTGGT GTGGGGTGGTTAATCCATTAGGGTAGTGGTAGTACATAGTATTAGTTCAA TTTTTTTGCTGGGGATAGAAATTCAGCCCCGTTTAATCTTTTGGGTGGTG ATGCAAATATTATTGCTCAGATTTTTTGTGTTGATGGAGGCATTGATTTT TTTTTTTTAGGATAAT
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Coding sequence (CDS) from alignment at Chromosome01:1148450..1149615+

>Manes.01G006500.1.v6.1 ID=Manes.01G006500.1.v6.1|Name=Manes.01G006500.1|organism=Manihot esculenta|type=CDS|length=930bp|location=Sequence derived from alignment at Chromosome01:1148450..1149615+ (Manihot esculenta)
ATGGATTCTGCTACTTCATCAGACAAGAAGCTGCTACTGCTCTCCATGGA
TAACAGCTGCTCTTCTGTTTCTACTGAAGATTATTATGGTCAAGATCAAG
AGCAAGAGCAAGTTCTACATCGTAGTCATCAAGAACATCCCTCTGAGGCT
ACAGCTATCAATCTCAAGGATTCTCTCATTGCAGGAAGTTGGTCCACTAC
TCGGAAGAGAACATTCAGTTTCGATTGCTGTTCTTCCTCTTCTTGTTTGA
ATCATGTGGATCAAAAGATTCTTGAAAGAATTCCCACCGTGATTTTTCTT
AAATCTATGGGTTTTGCCGAAAAGAATATATCAGATGTTTTGCGAGAGAT
GGGGAACAATAAGGTGAAGCAAAAAGTTGAAGAGACGATGCAGCAGTGGT
GTTCAGCGAACAACTCCAACATTAGCTCGCAGGACTCGGTTGCTACTCCT
ATTGATAGAAGGAAGAAGAGCTGTACTGATATGGGAATCGTTAAGAAGAA
GAAGAAGAAGATGGATATCAAGCTAAAAAGCCTATCAGAATTGGTTGATT
CCAAGGGTTCTTATGTATGCAAACAATGCAACAAGGTGTTTGATGATTTC
CGTGCCCTTGGCGGCCATACAGCTGCTCACAACAGGAAGACGGCGGAGAA
TGAGCCGTCGGAGGAATTGGTAACCGGAGGAAGAGGTGTAAAAACTGGTC
CGATTCCGGCAGAACTAACAGTTGATAACAGAGGAAAGAAATATGAGTGT
AACCTGTGTTCAAGGCGGTTTCCCACGGGGCAGGCTCTTGGAGGGCATAA
ATCCTATCACCGGAAGATGGCCTGTGGCGAAGTCCAAGAGGTTTCCACCG
AAAGGTCTGCACCTGCAAAATATGCAGATATAAAAATTGATTTGAATGCC
CCTCCAGATGAGTTGGTGTGGGGTGGTTAA
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