Manes.01G006400.1.v6.1 (mRNA)

Overview
NameManes.01G006400.1
Unique NameManes.01G006400.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length738
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:1146654..1147391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32359425
Longest1
AncestorIdentifiercassava4.1_018334m.v4.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G006400Manes.01G006400.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G006400.1Manes.01G006400.1.v6.1-proteinManihot esculentapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G006400.1.v6.1.five_prime_UTR.1Manes.01G006400.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G006400.1.v6.1.CDS.1Manes.01G006400.1.v6.1.CDS.1Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G006400.1.v6.1.three_prime_UTR.1Manes.01G006400.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G006400.1.v6.1 ID=Manes.01G006400.1.v6.1|Name=Manes.01G006400.1|organism=Manihot esculenta|type=mRNA|length=738bp
ACCATCTCTCTCTTAATTTTCCTCTGAATCCACCGCCAATGGCAACCTCC
ACCTTGTTCCTCACACCCACGGTCCAAAAGCACCGCCACAACCTCTCCCC
GTTTCAAGGCCTTAGACCCATCACCCAGGCCAAAACCTCCCTGCTCAAGT
TCACCACCACCACCAACTCAAGGAGGAGCTTCGGCGTGAAAGCAGAGCTA
AGCGCCCCACTAGTGATCAGCCTGAGCACAGGACTGTCTCTGTTCCTGGG
AAGATTTGTGTTCTTCAACTTCCAGAGAGAGAACGTGGCAAAGCAAGGGT
TGCCGGAGCAGAACGGAGTGACCCATTTTGAGGCCGGAGATGTGCGTGCC
AAGGAGTATGTTAGCCTCTTGAAATCAAACGATCCGGTTGGGTTCAATAT
CGTTGATGTTCTTGCATGGGGCTCGATTGGCCACATCGTTGCTTACTATA
TCTTGGCCACCACCAGCAATGGCTATGATCCTAAGTTCTTCTAGTTTCCT
TCCTACTTTGTATATTTTTCTTCATGTTCTGTTGAAGCTTCAAACCTTTC
AATGGCTTCTTTATTATTCATTATGAATTAATTATTACTTAGTTAAAAAA
ATAGTCACTGAAATCAATCATCGAGTATATTTTTATTAATTTGACTCATT
TTCATAGAAAAATTAATTTTTGAAAATGAAATAATTAGATTCTGTTTGGG
TACATAAATGGGATAAATTTTTTTAAAGGGGAGGAGAG
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mRNA from alignment at Chromosome01:1146654..1147391+

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G006400.1.v6.1 ID=Manes.01G006400.1.v6.1|Name=Manes.01G006400.1|organism=Manihot esculenta|type=mRNA|length=738bp|location=Sequence derived from alignment at Chromosome01:1146654..1147391+ (Manihot esculenta)
ACCATCTCTCTCTTAATTTTCCTCTGAATCCACCGCCAATGGCAACCTCC ACCTTGTTCCTCACACCCACGGTCCAAAAGCACCGCCACAACCTCTCCCC GTTTCAAGGCCTTAGACCCATCACCCAGGCCAAAACCTCCCTGCTCAAGT TCACCACCACCACCAACTCAAGGAGGAGCTTCGGCGTGAAAGCAGAGCTA AGCGCCCCACTAGTGATCAGCCTGAGCACAGGACTGTCTCTGTTCCTGGG AAGATTTGTGTTCTTCAACTTCCAGAGAGAGAACGTGGCAAAGCAAGGGT TGCCGGAGCAGAACGGAGTGACCCATTTTGAGGCCGGAGATGTGCGTGCC AAGGAGTATGTTAGCCTCTTGAAATCAAACGATCCGGTTGGGTTCAATAT CGTTGATGTTCTTGCATGGGGCTCGATTGGCCACATCGTTGCTTACTATA TCTTGGCCACCACCAGCAATGGCTATGATCCTAAGTTCTTCTAGTTTCCT TCCTACTTTGTATATTTTTCTTCATGTTCTGTTGAAGCTTCAAACCTTTC AATGGCTTCTTTATTATTCATTATGAATTAATTATTACTTAGTTAAAAAA ATAGTCACTGAAATCAATCATCGAGTATATTTTTATTAATTTGACTCATT TTCATAGAAAAATTAATTTTTGAAAATGAAATAATTAGATTCTGTTTGGG TACATAAATGGGATAAATTTTTTTAAAGGGGAGGAGAG
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Coding sequence (CDS) from alignment at Chromosome01:1146654..1147391+

>Manes.01G006400.1.v6.1 ID=Manes.01G006400.1.v6.1|Name=Manes.01G006400.1|organism=Manihot esculenta|type=CDS|length=456bp|location=Sequence derived from alignment at Chromosome01:1146654..1147391+ (Manihot esculenta)
ATGGCAACCTCCACCTTGTTCCTCACACCCACGGTCCAAAAGCACCGCCA
CAACCTCTCCCCGTTTCAAGGCCTTAGACCCATCACCCAGGCCAAAACCT
CCCTGCTCAAGTTCACCACCACCACCAACTCAAGGAGGAGCTTCGGCGTG
AAAGCAGAGCTAAGCGCCCCACTAGTGATCAGCCTGAGCACAGGACTGTC
TCTGTTCCTGGGAAGATTTGTGTTCTTCAACTTCCAGAGAGAGAACGTGG
CAAAGCAAGGGTTGCCGGAGCAGAACGGAGTGACCCATTTTGAGGCCGGA
GATGTGCGTGCCAAGGAGTATGTTAGCCTCTTGAAATCAAACGATCCGGT
TGGGTTCAATATCGTTGATGTTCTTGCATGGGGCTCGATTGGCCACATCG
TTGCTTACTATATCTTGGCCACCACCAGCAATGGCTATGATCCTAAGTTC
TTCTAG
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