Manes.01G006300.1.v6.1 (mRNA)

Overview


Name	Manes.01G006300.1
Unique Name	Manes.01G006300.1.v6.1
Type	mRNA
Organism	Manihot esculenta (Cassava)
Sequence length	4218

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chromosome01	chromosome	Chromosome01:1135435..1139652 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)	2015-07-22

Properties


Property Name	Value
Pacid	32359297
Longest	1
AncestorIdentifier	cassava4.1_017754m.v4.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Manes.01G006300	Manes.01G006300.v6.1	Manihot esculenta	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G006300.1	Manes.01G006300.1.v6.1-protein	Manihot esculenta	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G006300.1.v6.1.CDS.3	Manes.01G006300.1.v6.1.CDS.3	Manihot esculenta	CDS
Manes.01G006300.1.v6.1.CDS.2	Manes.01G006300.1.v6.1.CDS.2	Manihot esculenta	CDS
Manes.01G006300.1.v6.1.CDS.1	Manes.01G006300.1.v6.1.CDS.1	Manihot esculenta	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G006300.1.v6.1.three_prime_UTR.1	Manes.01G006300.1.v6.1.three_prime_UTR.1	Manihot esculenta	three_prime_UTR

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G006300.1.v6.1.five_prime_UTR.1	Manes.01G006300.1.v6.1.five_prime_UTR.1	Manihot esculenta	five_prime_UTR

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA from alignment at Chromosome01:1135435..1139652-
coding sequnece from alignment at Chromosome01:1135435..1139652-

mRNA sequence

>Manes.01G006300.1.v6.1 ID=Manes.01G006300.1.v6.1|Name=Manes.01G006300.1|organism=Manihot esculenta|type=mRNA|length=4218bp
AAGAAATGAAACTGGAGGAGTCGTTGTATTTAAATTTTGAAGTACATATA
GCTCTAAGTGTTGAATCATTAATCACTCAATACAACCAAGCACTAAAACC
TACCACTTGGGCAGCAAATCACAAACCAATATACAAATTAAATTTTCACA
ATGCCTGACGGATGAATTTAACTCTAGCACAAATACAATGAAATAACAAA
GAAGGTAATAATGGTTAAGAATATAATTCAATTATTGGAGAATAAATATA
TAATCAACATTTCAAGCCTTCAAAACAAGTGAACTAACAACACTAGGAAG
CTAGATGTGAGCATCAGCAGCAGGGATGGATAGCGAATAATCTGACTCCC
ACTATCATTAGCCAACTGTGAAGGCGCCAGTGCAGGGCATGCGAGCCCCA
GTTTCCCTTCTCGGCATTCACTAGCGAAAAGGCCAGGTGGGTATTTTCCG
TTTAGGTTAATGTAGCTGAACATGGTTGACGCACAATCATTGGTCAAATC
ATTCAAATAATCAGCATAAGGACAAGCAAAGTCCTTGAATGCTTTACAAC
ATGGATCACGAGGATACTTAGGTCCTTTACATTGGCTCGTGAGGACTGTA
TAGTTCAGAAACTCGAAGTTTAATGGGCAGGCTGCAGAGAAGGTAACATA
ACATTAGATTATCAGAATGTGATTCTATAATATAATGCTAAAGCATAATT
AATTGTGGAACAGAATTGCTAGGGGTATTTGGCAGTGGTTTCTATGATAT
CTTTGATTTTTTTGAATATTTTGAACACAAAAAAAAAATGGATTACAGCA
CCCATCTTTTTATCGAAAACGGACAAATCAATAAAAAAATGTACATATGC
AGATCAAAGATCATCAAAGATAAACACAACCATCACTTGCATATGTAGAT
AACCGAGCAATCATTGTGACAGGTTACAAAGCCAAGACCAGACTACGGGC
CTGAATGGAAAGGAAGTATAATCAACATGTCCAAGAGCATATATAAAATA
ATTTCATTAACATTGTATCATCAATGTAGATGTATGCATGAAACTAGGAA
TTAATCAATTCAGAAAATTTAATAATCACTAAAACAAGAAGATTGGGAAA
ACATTGGAAATTATCGTCACAAAGGCTATAGCAAAGAATTTGTTATCAGC
TAAAATGCCAAATTTAGCCCTGAACCATACTGCAGGGGCCAAAAATGTTA
AATTTCATTTTTTTAGCCCAAATTTGCCTTTAAACTATCATAATAAGTAG
AAATAATGCCATCACTTATAAGGATTTACAGAGAATAAGCCAAATAGACT
GTAAAGAGTGTAGCTCATTCTCTTTAAATCCTTACAAGTGATGGATGATA
GTTAAGGGACAAATTTGGACCAAAAAAAAAAAATTTGGCATTTGACACTT
GCTGTACAGTTCAGGGGCAATTTAGGCCCTTTTGCCATTTGTCATCCTTT
GAATTAGATTTCCTCAGTTGAACATTTTGAATTCATCCATTTTTTACACT
ACAAATCTCCAAAATTAAAATTTCAATCTACCACATAATTTTGAACCATG
AACGTAATGCACTACTCTCTAAAAGCCTACAAGTCTCACAAATCGTTTAG
GTTATCTTTGGGAGAGGGAGGAAAATGTATAATAGAGTGAAAATGAAAGG
AAATGGAAGGAAGAAAGAAAAAGGGACCCACATTACAAAGGAAAAGAAAT
GTAAGCATTTCATGTTCTATTTTCTTCATATGTCATTTCCCCTCATTTTC
CTCTTCTTCCAAAAAAAGCCTTTGGACAAGGTGAGGGAATTTAATAGAGG
GATAAAGGAAGGTACAGAGGAGGAAGGGTAAGGAAGGTTGCAATAATAAT
AATAATAAATTACATGTTTCGAAAGGGATAAATTAATAGGAAGATAAGAG
AGGGTAATAAATATTAAAATTTAAATAATTGTCCTATTTCCTTCTCCTCA
AACTCCAATTTGATGTGTAAGAAAAATTGGCATTTGAGGTGTAAAGCAAG
GTAAAGCTTACTATTTCTTGTCTTTGTTTACACCTCCTTCACCTCTTTCC
AGATAGGGGGTACATATATTACTTACCTCTCATTACCTTTATTTACCCTC
TTTCCCCTCCAACCAAACATAGTCTAAATAGAAGCCAATATTTGCTTCGT
CCTACATTATATTTTGACTTCATTAACACAGGATACATATCGACCTAAGT
GTACTTGATGGGAAAAAAAAAAACAATTGCCAAAGCATGGAGATTAAGGA
CTTTAGAGAAGTCCAAATTGTACTTCCAAATATCAACATGCAAATGGCTT
TATTTGATGAATAATGAACTGTTTCTATAAAGTCTTGTGAATTCACAATG
TAACTTTAGAATGACATGCACATGCAAATGCAAATTCTGGTTTTCAAGTC
ATACAGTCATACTAGTGGAAAATTCATCCTAACATATATAGGACAGGTTG
TGGAACCGGCTCAGCAATGCTTCGATGGTGAACAATTCTCAAACAACTGG
TAGGGTTTTAGAACTTTTGATTTAATGAGAAAGGGGAATTTAGTATTAGG
AAATTGAACTACAGTTTGTTAGAGATAAATAAATAGAAATTAGAGATTGT
TGGGGCTGTGAACATTATCTGACCTAATTTAGCAGCAGAGGAAAAGGTGG
CAGAAGCCTGAAGAATGGAAGGACAGAAGTACTAGAATGAAAGGGGCAGG
GGGAGGAGAGAGAGAGAGAGAGAGAGCAGAGCAGTAGTAGTAGGAATCAA
ACATTTGAAATCAAATGTTTAACACATCAAAACATAAGAAAATAACTAAG
TTACATAGATTTTGTTGAGATTTAATATTTTATCATACCAAACCAATACA
AAATATGATAGGAAGCAAACAATTTTCTAAATATTCCTAATGCTAAGTTC
CTAAATAATAGTAAAACCAATACTTCCTACATAAAAACTTAGAAAAAAGA
TTGGATTGCAGACAGAGTAAACCCAAAACTTGCTAAATTTAATTGTCTTG
ACTGCATCAATAACTTATGCAAGCACGTTACCAAATTTCAAACACTATGG
TGCAATATATAAATGCACAAGAGAAACAATGAACCCACAACCTCATATAG
CTGACTTGATGAGCAATGTTCAAATGAAATATCACTTGACAACAAATTAT
ATTAGTAAATTCAAATCGGCTGATAAAAGCAAAATTGCATGAAATCAGAT
GGCATTTTATATTAATTAAGTAATTGCCTTCCTCCTCAGGCTAACTTCTT
TTTCATTTTTCCAATGAATCAACATCTTGAGTAAAGCCGCTATGAATTTT
AAAGGAAAATAACTGCTCTATCAGCTAGTAACTGATCAGAAATCCCTATT
TGTAGGGTTGGTAACTTATAATTAGAAGGCAATCAATTAAATTTATGCTA
GAACAGAGATAAACAACAGAAAAAAAAAAAGAAGCAATGATCTCACTGTT
AAAGCAACAGGGTAACTTTGGAGGCTTGAACAAACAAATTCAGCCTTAAA
CAAATTATTGAGCACAAAAATCAACCAAGTTATAGAAATTCACAAAACAT
AATTCTCATTTCAGAACATAATTTCTTGATTTCTAGGCTGAAAAATGATG
CATAATTAAACAACTCAAAGCACTTAGATCACATAAGAACAGTATTATAA
CAAAACCCACAAAGGAAATCCAAGATTAAACCCAATCCAAAAAATAATAA
TTAGAGAAATGTGAATAAGAAGAAAGAAAAGAAAAGAAAAGAAACCTTTC
TTAGCCTGAAGCAGATTCCTGCCTGTGGAATCATGGGATTGAAAAACAGA
ATCTGGATCCGAATCAGCAACAGCACAAAATCAAGTTCTAGAAAACAAAA
AATCAAAGTCTAGTATGTGCGTACATGATAAATTCCTTAAAATACCTGAA
ATAGAACTGGAAGCAGAAGGAGGAGCAAAGGCAACAATCAACAGAAGAAA
GAAGAGAAATAAAGAAAACCGATTCAGTGCCATCTTTGCTTATTTCATAT
ACATATGAAAAGGAGAGATCTGCCCTCTGCAACTCGTCTTTCTTTTCTTG
TAAAAGAAAGTTGAAAGCTTTAAGGATGAAATGCAAGGGTAGGAGGTGAT
GATGGAGAAGTGGGTGACAGCAAATAACGCCGAAGATACAGCTCACAGCT
GCTCTTTTTCTTTCTCCTCTTGCTGCGTCTCCTGTTTCTGCTTCTGCTAA
TTTATTAATCAAATTTCT

mRNA from alignment at Chromosome01:1135435..1139652-

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Manes.01G006300.1.v6.1 ID=Manes.01G006300.1.v6.1|Name=Manes.01G006300.1|organism=Manihot esculenta|type=mRNA|length=4218bp|location=Sequence derived from alignment at Chromosome01:1135435..1139652- (Manihot esculenta)
AGAAATTTGATTAATAAATTAGCAGAAGCAGAAACAGGAGACGCAGCAAG
AGGAGAAAGAAAAAGAGCAGCTGTGAGCTGTATCTTCGGCGTTATTTGCT
GTCACCCACTTCTCCATCATCACCTCCTACCCTTGCATTTCATCCTTAAA
GCTTTCAACTTTCTTTTACAAGAAAAGAAAGACGAGTTGCAGAGGGCAGA
TCTCTCCTTTTCATATGTATATGAAATAAGCAAAGATGGCACTGAATCGG
TTTTCTTTATTTCTCTTCTTTCTTCTGTTGATTGTTGCCTTTGCTCCTCC
TTCTGCTTCCAGTTCTATTTCAGGTATTTTAAGGAATTTATCATGTACGC
ACATACTAGACTTTGATTTTTTGTTTTCTAGAACTTGATTTTGTGCTGTT
GCTGATTCGGATCCAGATTCTGTTTTTCAATCCCATGATTCCACAGGCAG
GAATCTGCTTCAGGCTAAGAAAGGTTTCTTTTCTTTTCTTTTCTTTCTTC
TTATTCACATTTCTCTAATTATTATTTTTTGGATTGGGTTTAATCTTGGA
TTTCCTTTGTGGGTTTTGTTATAATACTGTTCTTATGTGATCTAAGTGCT
TTGAGTTGTTTAATTATGCATCATTTTTCAGCCTAGAAATCAAGAAATTA
TGTTCTGAAATGAGAATTATGTTTTGTGAATTTCTATAACTTGGTTGATT
TTTGTGCTCAATAATTTGTTTAAGGCTGAATTTGTTTGTTCAAGCCTCCA
AAGTTACCCTGTTGCTTTAACAGTGAGATCATTGCTTCTTTTTTTTTTTC
TGTTGTTTATCTCTGTTCTAGCATAAATTTAATTGATTGCCTTCTAATTA
TAAGTTACCAACCCTACAAATAGGGATTTCTGATCAGTTACTAGCTGATA
GAGCAGTTATTTTCCTTTAAAATTCATAGCGGCTTTACTCAAGATGTTGA
TTCATTGGAAAAATGAAAAAGAAGTTAGCCTGAGGAGGAAGGCAATTACT
TAATTAATATAAAATGCCATCTGATTTCATGCAATTTTGCTTTTATCAGC
CGATTTGAATTTACTAATATAATTTGTTGTCAAGTGATATTTCATTTGAA
CATTGCTCATCAAGTCAGCTATATGAGGTTGTGGGTTCATTGTTTCTCTT
GTGCATTTATATATTGCACCATAGTGTTTGAAATTTGGTAACGTGCTTGC
ATAAGTTATTGATGCAGTCAAGACAATTAAATTTAGCAAGTTTTGGGTTT
ACTCTGTCTGCAATCCAATCTTTTTTCTAAGTTTTTATGTAGGAAGTATT
GGTTTTACTATTATTTAGGAACTTAGCATTAGGAATATTTAGAAAATTGT
TTGCTTCCTATCATATTTTGTATTGGTTTGGTATGATAAAATATTAAATC
TCAACAAAATCTATGTAACTTAGTTATTTTCTTATGTTTTGATGTGTTAA
ACATTTGATTTCAAATGTTTGATTCCTACTACTACTGCTCTGCTCTCTCT
CTCTCTCTCTCTCCTCCCCCTGCCCCTTTCATTCTAGTACTTCTGTCCTT
CCATTCTTCAGGCTTCTGCCACCTTTTCCTCTGCTGCTAAATTAGGTCAG
ATAATGTTCACAGCCCCAACAATCTCTAATTTCTATTTATTTATCTCTAA
CAAACTGTAGTTCAATTTCCTAATACTAAATTCCCCTTTCTCATTAAATC
AAAAGTTCTAAAACCCTACCAGTTGTTTGAGAATTGTTCACCATCGAAGC
ATTGCTGAGCCGGTTCCACAACCTGTCCTATATATGTTAGGATGAATTTT
CCACTAGTATGACTGTATGACTTGAAAACCAGAATTTGCATTTGCATGTG
CATGTCATTCTAAAGTTACATTGTGAATTCACAAGACTTTATAGAAACAG
TTCATTATTCATCAAATAAAGCCATTTGCATGTTGATATTTGGAAGTACA
ATTTGGACTTCTCTAAAGTCCTTAATCTCCATGCTTTGGCAATTGTTTTT
TTTTTTCCCATCAAGTACACTTAGGTCGATATGTATCCTGTGTTAATGAA
GTCAAAATATAATGTAGGACGAAGCAAATATTGGCTTCTATTTAGACTAT
GTTTGGTTGGAGGGGAAAGAGGGTAAATAAAGGTAATGAGAGGTAAGTAA
TATATGTACCCCCTATCTGGAAAGAGGTGAAGGAGGTGTAAACAAAGACA
AGAAATAGTAAGCTTTACCTTGCTTTACACCTCAAATGCCAATTTTTCTT
ACACATCAAATTGGAGTTTGAGGAGAAGGAAATAGGACAATTATTTAAAT
TTTAATATTTATTACCCTCTCTTATCTTCCTATTAATTTATCCCTTTCGA
AACATGTAATTTATTATTATTATTATTGCAACCTTCCTTACCCTTCCTCC
TCTGTACCTTCCTTTATCCCTCTATTAAATTCCCTCACCTTGTCCAAAGG
CTTTTTTTGGAAGAAGAGGAAAATGAGGGGAAATGACATATGAAGAAAAT
AGAACATGAAATGCTTACATTTCTTTTCCTTTGTAATGTGGGTCCCTTTT
TCTTTCTTCCTTCCATTTCCTTTCATTTTCACTCTATTATACATTTTCCT
CCCTCTCCCAAAGATAACCTAAACGATTTGTGAGACTTGTAGGCTTTTAG
AGAGTAGTGCATTACGTTCATGGTTCAAAATTATGTGGTAGATTGAAATT
TTAATTTTGGAGATTTGTAGTGTAAAAAATGGATGAATTCAAAATGTTCA
ACTGAGGAAATCTAATTCAAAGGATGACAAATGGCAAAAGGGCCTAAATT
GCCCCTGAACTGTACAGCAAGTGTCAAATGCCAAATTTTTTTTTTTTGGT
CCAAATTTGTCCCTTAACTATCATCCATCACTTGTAAGGATTTAAAGAGA
ATGAGCTACACTCTTTACAGTCTATTTGGCTTATTCTCTGTAAATCCTTA
TAAGTGATGGCATTATTTCTACTTATTATGATAGTTTAAAGGCAAATTTG
GGCTAAAAAAATGAAATTTAACATTTTTGGCCCCTGCAGTATGGTTCAGG
GCTAAATTTGGCATTTTAGCTGATAACAAATTCTTTGCTATAGCCTTTGT
GACGATAATTTCCAATGTTTTCCCAATCTTCTTGTTTTAGTGATTATTAA
ATTTTCTGAATTGATTAATTCCTAGTTTCATGCATACATCTACATTGATG
ATACAATGTTAATGAAATTATTTTATATATGCTCTTGGACATGTTGATTA
TACTTCCTTTCCATTCAGGCCCGTAGTCTGGTCTTGGCTTTGTAACCTGT
CACAATGATTGCTCGGTTATCTACATATGCAAGTGATGGTTGTGTTTATC
TTTGATGATCTTTGATCTGCATATGTACATTTTTTTATTGATTTGTCCGT
TTTCGATAAAAAGATGGGTGCTGTAATCCATTTTTTTTTTGTGTTCAAAA
TATTCAAAAAAATCAAAGATATCATAGAAACCACTGCCAAATACCCCTAG
CAATTCTGTTCCACAATTAATTATGCTTTAGCATTATATTATAGAATCAC
ATTCTGATAATCTAATGTTATGTTACCTTCTCTGCAGCCTGCCCATTAAA
CTTCGAGTTTCTGAACTATACAGTCCTCACGAGCCAATGTAAAGGACCTA
AGTATCCTCGTGATCCATGTTGTAAAGCATTCAAGGACTTTGCTTGTCCT
TATGCTGATTATTTGAATGATTTGACCAATGATTGTGCGTCAACCATGTT
CAGCTACATTAACCTAAACGGAAAATACCCACCTGGCCTTTTCGCTAGTG
AATGCCGAGAAGGGAAACTGGGGCTCGCATGCCCTGCACTGGCGCCTTCA
CAGTTGGCTAATGATAGTGGGAGTCAGATTATTCGCTATCCATCCCTGCT
GCTGATGCTCACATCTAGCTTCCTAGTGTTGTTAGTTCACTTGTTTTGAA
GGCTTGAAATGTTGATTATATATTTATTCTCCAATAATTGAATTATATTC
TTAACCATTATTACCTTCTTTGTTATTTCATTGTATTTGTGCTAGAGTTA
AATTCATCCGTCAGGCATTGTGAAAATTTAATTTGTATATTGGTTTGTGA
TTTGCTGCCCAAGTGGTAGGTTTTAGTGCTTGGTTGTATTGAGTGATTAA
TGATTCAACACTTAGAGCTATATGTACTTCAAAATTTAAATACAACGACT
CCTCCAGTTTCATTTCTT

Coding sequence (CDS) from alignment at Chromosome01:1135435..1139652-

>Manes.01G006300.1.v6.1 ID=Manes.01G006300.1.v6.1|Name=Manes.01G006300.1|organism=Manihot esculenta|type=CDS|length=507bp|location=Sequence derived from alignment at Chromosome01:1135435..1139652- (Manihot esculenta)
ATGGCACTGAATCGGTTTTCTTTATTTCTCTTCTTTCTTCTGTTGATTGT
TGCCTTTGCTCCTCCTTCTGCTTCCAGTTCTATTTCAGATTCTGTTTTTC
AATCCCATGATTCCACAGGCAGGAATCTGCTTCAGGCTAAGAAAGCCTGC
CCATTAAACTTCGAGTTTCTGAACTATACAGTCCTCACGAGCCAATGTAA
AGGACCTAAGTATCCTCGTGATCCATGTTGTAAAGCATTCAAGGACTTTG
CTTGTCCTTATGCTGATTATTTGAATGATTTGACCAATGATTGTGCGTCA
ACCATGTTCAGCTACATTAACCTAAACGGAAAATACCCACCTGGCCTTTT
CGCTAGTGAATGCCGAGAAGGGAAACTGGGGCTCGCATGCCCTGCACTGG
CGCCTTCACAGTTGGCTAATGATAGTGGGAGTCAGATTATTCGCTATCCA
TCCCTGCTGCTGATGCTCACATCTAGCTTCCTAGTGTTGTTAGTTCACTT
GTTTTGA