Manes.01G006300.1.v6.1 (mRNA)

Overview
NameManes.01G006300.1
Unique NameManes.01G006300.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length4218
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:1135435..1139652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32359297
Longest1
AncestorIdentifiercassava4.1_017754m.v4.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G006300Manes.01G006300.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G006300.1Manes.01G006300.1.v6.1-proteinManihot esculentapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G006300.1.v6.1.CDS.3Manes.01G006300.1.v6.1.CDS.3Manihot esculentaCDS
Manes.01G006300.1.v6.1.CDS.2Manes.01G006300.1.v6.1.CDS.2Manihot esculentaCDS
Manes.01G006300.1.v6.1.CDS.1Manes.01G006300.1.v6.1.CDS.1Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G006300.1.v6.1.three_prime_UTR.1Manes.01G006300.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G006300.1.v6.1.five_prime_UTR.1Manes.01G006300.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G006300.1.v6.1 ID=Manes.01G006300.1.v6.1|Name=Manes.01G006300.1|organism=Manihot esculenta|type=mRNA|length=4218bp
AAGAAATGAAACTGGAGGAGTCGTTGTATTTAAATTTTGAAGTACATATA
GCTCTAAGTGTTGAATCATTAATCACTCAATACAACCAAGCACTAAAACC
TACCACTTGGGCAGCAAATCACAAACCAATATACAAATTAAATTTTCACA
ATGCCTGACGGATGAATTTAACTCTAGCACAAATACAATGAAATAACAAA
GAAGGTAATAATGGTTAAGAATATAATTCAATTATTGGAGAATAAATATA
TAATCAACATTTCAAGCCTTCAAAACAAGTGAACTAACAACACTAGGAAG
CTAGATGTGAGCATCAGCAGCAGGGATGGATAGCGAATAATCTGACTCCC
ACTATCATTAGCCAACTGTGAAGGCGCCAGTGCAGGGCATGCGAGCCCCA
GTTTCCCTTCTCGGCATTCACTAGCGAAAAGGCCAGGTGGGTATTTTCCG
TTTAGGTTAATGTAGCTGAACATGGTTGACGCACAATCATTGGTCAAATC
ATTCAAATAATCAGCATAAGGACAAGCAAAGTCCTTGAATGCTTTACAAC
ATGGATCACGAGGATACTTAGGTCCTTTACATTGGCTCGTGAGGACTGTA
TAGTTCAGAAACTCGAAGTTTAATGGGCAGGCTGCAGAGAAGGTAACATA
ACATTAGATTATCAGAATGTGATTCTATAATATAATGCTAAAGCATAATT
AATTGTGGAACAGAATTGCTAGGGGTATTTGGCAGTGGTTTCTATGATAT
CTTTGATTTTTTTGAATATTTTGAACACAAAAAAAAAATGGATTACAGCA
CCCATCTTTTTATCGAAAACGGACAAATCAATAAAAAAATGTACATATGC
AGATCAAAGATCATCAAAGATAAACACAACCATCACTTGCATATGTAGAT
AACCGAGCAATCATTGTGACAGGTTACAAAGCCAAGACCAGACTACGGGC
CTGAATGGAAAGGAAGTATAATCAACATGTCCAAGAGCATATATAAAATA
ATTTCATTAACATTGTATCATCAATGTAGATGTATGCATGAAACTAGGAA
TTAATCAATTCAGAAAATTTAATAATCACTAAAACAAGAAGATTGGGAAA
ACATTGGAAATTATCGTCACAAAGGCTATAGCAAAGAATTTGTTATCAGC
TAAAATGCCAAATTTAGCCCTGAACCATACTGCAGGGGCCAAAAATGTTA
AATTTCATTTTTTTAGCCCAAATTTGCCTTTAAACTATCATAATAAGTAG
AAATAATGCCATCACTTATAAGGATTTACAGAGAATAAGCCAAATAGACT
GTAAAGAGTGTAGCTCATTCTCTTTAAATCCTTACAAGTGATGGATGATA
GTTAAGGGACAAATTTGGACCAAAAAAAAAAAATTTGGCATTTGACACTT
GCTGTACAGTTCAGGGGCAATTTAGGCCCTTTTGCCATTTGTCATCCTTT
GAATTAGATTTCCTCAGTTGAACATTTTGAATTCATCCATTTTTTACACT
ACAAATCTCCAAAATTAAAATTTCAATCTACCACATAATTTTGAACCATG
AACGTAATGCACTACTCTCTAAAAGCCTACAAGTCTCACAAATCGTTTAG
GTTATCTTTGGGAGAGGGAGGAAAATGTATAATAGAGTGAAAATGAAAGG
AAATGGAAGGAAGAAAGAAAAAGGGACCCACATTACAAAGGAAAAGAAAT
GTAAGCATTTCATGTTCTATTTTCTTCATATGTCATTTCCCCTCATTTTC
CTCTTCTTCCAAAAAAAGCCTTTGGACAAGGTGAGGGAATTTAATAGAGG
GATAAAGGAAGGTACAGAGGAGGAAGGGTAAGGAAGGTTGCAATAATAAT
AATAATAAATTACATGTTTCGAAAGGGATAAATTAATAGGAAGATAAGAG
AGGGTAATAAATATTAAAATTTAAATAATTGTCCTATTTCCTTCTCCTCA
AACTCCAATTTGATGTGTAAGAAAAATTGGCATTTGAGGTGTAAAGCAAG
GTAAAGCTTACTATTTCTTGTCTTTGTTTACACCTCCTTCACCTCTTTCC
AGATAGGGGGTACATATATTACTTACCTCTCATTACCTTTATTTACCCTC
TTTCCCCTCCAACCAAACATAGTCTAAATAGAAGCCAATATTTGCTTCGT
CCTACATTATATTTTGACTTCATTAACACAGGATACATATCGACCTAAGT
GTACTTGATGGGAAAAAAAAAAACAATTGCCAAAGCATGGAGATTAAGGA
CTTTAGAGAAGTCCAAATTGTACTTCCAAATATCAACATGCAAATGGCTT
TATTTGATGAATAATGAACTGTTTCTATAAAGTCTTGTGAATTCACAATG
TAACTTTAGAATGACATGCACATGCAAATGCAAATTCTGGTTTTCAAGTC
ATACAGTCATACTAGTGGAAAATTCATCCTAACATATATAGGACAGGTTG
TGGAACCGGCTCAGCAATGCTTCGATGGTGAACAATTCTCAAACAACTGG
TAGGGTTTTAGAACTTTTGATTTAATGAGAAAGGGGAATTTAGTATTAGG
AAATTGAACTACAGTTTGTTAGAGATAAATAAATAGAAATTAGAGATTGT
TGGGGCTGTGAACATTATCTGACCTAATTTAGCAGCAGAGGAAAAGGTGG
CAGAAGCCTGAAGAATGGAAGGACAGAAGTACTAGAATGAAAGGGGCAGG
GGGAGGAGAGAGAGAGAGAGAGAGAGCAGAGCAGTAGTAGTAGGAATCAA
ACATTTGAAATCAAATGTTTAACACATCAAAACATAAGAAAATAACTAAG
TTACATAGATTTTGTTGAGATTTAATATTTTATCATACCAAACCAATACA
AAATATGATAGGAAGCAAACAATTTTCTAAATATTCCTAATGCTAAGTTC
CTAAATAATAGTAAAACCAATACTTCCTACATAAAAACTTAGAAAAAAGA
TTGGATTGCAGACAGAGTAAACCCAAAACTTGCTAAATTTAATTGTCTTG
ACTGCATCAATAACTTATGCAAGCACGTTACCAAATTTCAAACACTATGG
TGCAATATATAAATGCACAAGAGAAACAATGAACCCACAACCTCATATAG
CTGACTTGATGAGCAATGTTCAAATGAAATATCACTTGACAACAAATTAT
ATTAGTAAATTCAAATCGGCTGATAAAAGCAAAATTGCATGAAATCAGAT
GGCATTTTATATTAATTAAGTAATTGCCTTCCTCCTCAGGCTAACTTCTT
TTTCATTTTTCCAATGAATCAACATCTTGAGTAAAGCCGCTATGAATTTT
AAAGGAAAATAACTGCTCTATCAGCTAGTAACTGATCAGAAATCCCTATT
TGTAGGGTTGGTAACTTATAATTAGAAGGCAATCAATTAAATTTATGCTA
GAACAGAGATAAACAACAGAAAAAAAAAAAGAAGCAATGATCTCACTGTT
AAAGCAACAGGGTAACTTTGGAGGCTTGAACAAACAAATTCAGCCTTAAA
CAAATTATTGAGCACAAAAATCAACCAAGTTATAGAAATTCACAAAACAT
AATTCTCATTTCAGAACATAATTTCTTGATTTCTAGGCTGAAAAATGATG
CATAATTAAACAACTCAAAGCACTTAGATCACATAAGAACAGTATTATAA
CAAAACCCACAAAGGAAATCCAAGATTAAACCCAATCCAAAAAATAATAA
TTAGAGAAATGTGAATAAGAAGAAAGAAAAGAAAAGAAAAGAAACCTTTC
TTAGCCTGAAGCAGATTCCTGCCTGTGGAATCATGGGATTGAAAAACAGA
ATCTGGATCCGAATCAGCAACAGCACAAAATCAAGTTCTAGAAAACAAAA
AATCAAAGTCTAGTATGTGCGTACATGATAAATTCCTTAAAATACCTGAA
ATAGAACTGGAAGCAGAAGGAGGAGCAAAGGCAACAATCAACAGAAGAAA
GAAGAGAAATAAAGAAAACCGATTCAGTGCCATCTTTGCTTATTTCATAT
ACATATGAAAAGGAGAGATCTGCCCTCTGCAACTCGTCTTTCTTTTCTTG
TAAAAGAAAGTTGAAAGCTTTAAGGATGAAATGCAAGGGTAGGAGGTGAT
GATGGAGAAGTGGGTGACAGCAAATAACGCCGAAGATACAGCTCACAGCT
GCTCTTTTTCTTTCTCCTCTTGCTGCGTCTCCTGTTTCTGCTTCTGCTAA
TTTATTAATCAAATTTCT
back to top

mRNA from alignment at Chromosome01:1135435..1139652-

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G006300.1.v6.1 ID=Manes.01G006300.1.v6.1|Name=Manes.01G006300.1|organism=Manihot esculenta|type=mRNA|length=4218bp|location=Sequence derived from alignment at Chromosome01:1135435..1139652- (Manihot esculenta)
AGAAATTTGATTAATAAATTAGCAGAAGCAGAAACAGGAGACGCAGCAAG AGGAGAAAGAAAAAGAGCAGCTGTGAGCTGTATCTTCGGCGTTATTTGCT GTCACCCACTTCTCCATCATCACCTCCTACCCTTGCATTTCATCCTTAAA GCTTTCAACTTTCTTTTACAAGAAAAGAAAGACGAGTTGCAGAGGGCAGA TCTCTCCTTTTCATATGTATATGAAATAAGCAAAGATGGCACTGAATCGG TTTTCTTTATTTCTCTTCTTTCTTCTGTTGATTGTTGCCTTTGCTCCTCC TTCTGCTTCCAGTTCTATTTCAGGTATTTTAAGGAATTTATCATGTACGC ACATACTAGACTTTGATTTTTTGTTTTCTAGAACTTGATTTTGTGCTGTT GCTGATTCGGATCCAGATTCTGTTTTTCAATCCCATGATTCCACAGGCAG GAATCTGCTTCAGGCTAAGAAAGGTTTCTTTTCTTTTCTTTTCTTTCTTC TTATTCACATTTCTCTAATTATTATTTTTTGGATTGGGTTTAATCTTGGA TTTCCTTTGTGGGTTTTGTTATAATACTGTTCTTATGTGATCTAAGTGCT TTGAGTTGTTTAATTATGCATCATTTTTCAGCCTAGAAATCAAGAAATTA TGTTCTGAAATGAGAATTATGTTTTGTGAATTTCTATAACTTGGTTGATT TTTGTGCTCAATAATTTGTTTAAGGCTGAATTTGTTTGTTCAAGCCTCCA AAGTTACCCTGTTGCTTTAACAGTGAGATCATTGCTTCTTTTTTTTTTTC TGTTGTTTATCTCTGTTCTAGCATAAATTTAATTGATTGCCTTCTAATTA TAAGTTACCAACCCTACAAATAGGGATTTCTGATCAGTTACTAGCTGATA GAGCAGTTATTTTCCTTTAAAATTCATAGCGGCTTTACTCAAGATGTTGA TTCATTGGAAAAATGAAAAAGAAGTTAGCCTGAGGAGGAAGGCAATTACT TAATTAATATAAAATGCCATCTGATTTCATGCAATTTTGCTTTTATCAGC CGATTTGAATTTACTAATATAATTTGTTGTCAAGTGATATTTCATTTGAA CATTGCTCATCAAGTCAGCTATATGAGGTTGTGGGTTCATTGTTTCTCTT GTGCATTTATATATTGCACCATAGTGTTTGAAATTTGGTAACGTGCTTGC ATAAGTTATTGATGCAGTCAAGACAATTAAATTTAGCAAGTTTTGGGTTT ACTCTGTCTGCAATCCAATCTTTTTTCTAAGTTTTTATGTAGGAAGTATT GGTTTTACTATTATTTAGGAACTTAGCATTAGGAATATTTAGAAAATTGT TTGCTTCCTATCATATTTTGTATTGGTTTGGTATGATAAAATATTAAATC TCAACAAAATCTATGTAACTTAGTTATTTTCTTATGTTTTGATGTGTTAA ACATTTGATTTCAAATGTTTGATTCCTACTACTACTGCTCTGCTCTCTCT CTCTCTCTCTCTCCTCCCCCTGCCCCTTTCATTCTAGTACTTCTGTCCTT CCATTCTTCAGGCTTCTGCCACCTTTTCCTCTGCTGCTAAATTAGGTCAG ATAATGTTCACAGCCCCAACAATCTCTAATTTCTATTTATTTATCTCTAA CAAACTGTAGTTCAATTTCCTAATACTAAATTCCCCTTTCTCATTAAATC AAAAGTTCTAAAACCCTACCAGTTGTTTGAGAATTGTTCACCATCGAAGC ATTGCTGAGCCGGTTCCACAACCTGTCCTATATATGTTAGGATGAATTTT CCACTAGTATGACTGTATGACTTGAAAACCAGAATTTGCATTTGCATGTG CATGTCATTCTAAAGTTACATTGTGAATTCACAAGACTTTATAGAAACAG TTCATTATTCATCAAATAAAGCCATTTGCATGTTGATATTTGGAAGTACA ATTTGGACTTCTCTAAAGTCCTTAATCTCCATGCTTTGGCAATTGTTTTT TTTTTTCCCATCAAGTACACTTAGGTCGATATGTATCCTGTGTTAATGAA GTCAAAATATAATGTAGGACGAAGCAAATATTGGCTTCTATTTAGACTAT GTTTGGTTGGAGGGGAAAGAGGGTAAATAAAGGTAATGAGAGGTAAGTAA TATATGTACCCCCTATCTGGAAAGAGGTGAAGGAGGTGTAAACAAAGACA AGAAATAGTAAGCTTTACCTTGCTTTACACCTCAAATGCCAATTTTTCTT ACACATCAAATTGGAGTTTGAGGAGAAGGAAATAGGACAATTATTTAAAT TTTAATATTTATTACCCTCTCTTATCTTCCTATTAATTTATCCCTTTCGA AACATGTAATTTATTATTATTATTATTGCAACCTTCCTTACCCTTCCTCC TCTGTACCTTCCTTTATCCCTCTATTAAATTCCCTCACCTTGTCCAAAGG CTTTTTTTGGAAGAAGAGGAAAATGAGGGGAAATGACATATGAAGAAAAT AGAACATGAAATGCTTACATTTCTTTTCCTTTGTAATGTGGGTCCCTTTT TCTTTCTTCCTTCCATTTCCTTTCATTTTCACTCTATTATACATTTTCCT CCCTCTCCCAAAGATAACCTAAACGATTTGTGAGACTTGTAGGCTTTTAG AGAGTAGTGCATTACGTTCATGGTTCAAAATTATGTGGTAGATTGAAATT TTAATTTTGGAGATTTGTAGTGTAAAAAATGGATGAATTCAAAATGTTCA ACTGAGGAAATCTAATTCAAAGGATGACAAATGGCAAAAGGGCCTAAATT GCCCCTGAACTGTACAGCAAGTGTCAAATGCCAAATTTTTTTTTTTTGGT CCAAATTTGTCCCTTAACTATCATCCATCACTTGTAAGGATTTAAAGAGA ATGAGCTACACTCTTTACAGTCTATTTGGCTTATTCTCTGTAAATCCTTA TAAGTGATGGCATTATTTCTACTTATTATGATAGTTTAAAGGCAAATTTG GGCTAAAAAAATGAAATTTAACATTTTTGGCCCCTGCAGTATGGTTCAGG GCTAAATTTGGCATTTTAGCTGATAACAAATTCTTTGCTATAGCCTTTGT GACGATAATTTCCAATGTTTTCCCAATCTTCTTGTTTTAGTGATTATTAA ATTTTCTGAATTGATTAATTCCTAGTTTCATGCATACATCTACATTGATG ATACAATGTTAATGAAATTATTTTATATATGCTCTTGGACATGTTGATTA TACTTCCTTTCCATTCAGGCCCGTAGTCTGGTCTTGGCTTTGTAACCTGT CACAATGATTGCTCGGTTATCTACATATGCAAGTGATGGTTGTGTTTATC TTTGATGATCTTTGATCTGCATATGTACATTTTTTTATTGATTTGTCCGT TTTCGATAAAAAGATGGGTGCTGTAATCCATTTTTTTTTTGTGTTCAAAA TATTCAAAAAAATCAAAGATATCATAGAAACCACTGCCAAATACCCCTAG CAATTCTGTTCCACAATTAATTATGCTTTAGCATTATATTATAGAATCAC ATTCTGATAATCTAATGTTATGTTACCTTCTCTGCAGCCTGCCCATTAAA CTTCGAGTTTCTGAACTATACAGTCCTCACGAGCCAATGTAAAGGACCTA AGTATCCTCGTGATCCATGTTGTAAAGCATTCAAGGACTTTGCTTGTCCT TATGCTGATTATTTGAATGATTTGACCAATGATTGTGCGTCAACCATGTT CAGCTACATTAACCTAAACGGAAAATACCCACCTGGCCTTTTCGCTAGTG AATGCCGAGAAGGGAAACTGGGGCTCGCATGCCCTGCACTGGCGCCTTCA CAGTTGGCTAATGATAGTGGGAGTCAGATTATTCGCTATCCATCCCTGCT GCTGATGCTCACATCTAGCTTCCTAGTGTTGTTAGTTCACTTGTTTTGAA GGCTTGAAATGTTGATTATATATTTATTCTCCAATAATTGAATTATATTC TTAACCATTATTACCTTCTTTGTTATTTCATTGTATTTGTGCTAGAGTTA AATTCATCCGTCAGGCATTGTGAAAATTTAATTTGTATATTGGTTTGTGA TTTGCTGCCCAAGTGGTAGGTTTTAGTGCTTGGTTGTATTGAGTGATTAA TGATTCAACACTTAGAGCTATATGTACTTCAAAATTTAAATACAACGACT CCTCCAGTTTCATTTCTT
back to top

Coding sequence (CDS) from alignment at Chromosome01:1135435..1139652-

>Manes.01G006300.1.v6.1 ID=Manes.01G006300.1.v6.1|Name=Manes.01G006300.1|organism=Manihot esculenta|type=CDS|length=507bp|location=Sequence derived from alignment at Chromosome01:1135435..1139652- (Manihot esculenta)
ATGGCACTGAATCGGTTTTCTTTATTTCTCTTCTTTCTTCTGTTGATTGT
TGCCTTTGCTCCTCCTTCTGCTTCCAGTTCTATTTCAGATTCTGTTTTTC
AATCCCATGATTCCACAGGCAGGAATCTGCTTCAGGCTAAGAAAGCCTGC
CCATTAAACTTCGAGTTTCTGAACTATACAGTCCTCACGAGCCAATGTAA
AGGACCTAAGTATCCTCGTGATCCATGTTGTAAAGCATTCAAGGACTTTG
CTTGTCCTTATGCTGATTATTTGAATGATTTGACCAATGATTGTGCGTCA
ACCATGTTCAGCTACATTAACCTAAACGGAAAATACCCACCTGGCCTTTT
CGCTAGTGAATGCCGAGAAGGGAAACTGGGGCTCGCATGCCCTGCACTGG
CGCCTTCACAGTTGGCTAATGATAGTGGGAGTCAGATTATTCGCTATCCA
TCCCTGCTGCTGATGCTCACATCTAGCTTCCTAGTGTTGTTAGTTCACTT
GTTTTGA
back to top