Manes.01G005600.1.v6.1 (mRNA)

Overview
NameManes.01G005600.1
Unique NameManes.01G005600.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length3176
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:989165..992340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32358375
Longest1
AncestorIdentifiercassava4.1_025885m.v4.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G005600Manes.01G005600.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G005600.1Manes.01G005600.1.v6.1-proteinManihot esculentapolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G005600.1.v6.1.three_prime_UTR.2Manes.01G005600.1.v6.1.three_prime_UTR.2Manihot esculentathree_prime_UTR
Manes.01G005600.1.v6.1.three_prime_UTR.1Manes.01G005600.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G005600.1.v6.1.five_prime_UTR.1Manes.01G005600.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G005600.1.v6.1.CDS.1Manes.01G005600.1.v6.1.CDS.1Manihot esculentaCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G005600.1.v6.1 ID=Manes.01G005600.1.v6.1|Name=Manes.01G005600.1|organism=Manihot esculenta|type=mRNA|length=3176bp
GATAATATGCATATAATTGAACCCTAAACTGGAATGAGATTGCTGAAACT
AATACAAGAGAAAAGAAAAGAAAAGAAAAGAAAAAGACATTTGAATTAAA
ATATGATTGACTGACCCAAGCCAAGTTACTTTCTAGGGTGTTGAAGGAGG
CAGCCAATACAAAAAGGGTCCTTTGAGAGCTAACTCGCATCAAGAATTTT
TCTCTTTGGAAGATGAAACCAGAGTATGACCTTTGTAAGCTAACAATAAT
TCCTCAGCCTCATCTGGAAAGCTTGAGATAAACTTATCTACAAACATCAC
CTCTGTCATAAACAACATTTTACGAAAGCTTGGTTCCTTATATAATTTCT
TTGATTTCAAAATATCCCAAACTCTGAAACCAGGAACCACTCTTTTTTCC
ATACTCTGAATCAAAATTGAAGCACTACAGACTAAGGCCTCCTTAAACTT
CACTGAGTTCAGAAAGACACTTATTCCCAACTTCAACTTCTCCTCAGACC
TTGTTAGCAAATATGGAGCCTTTCTAAATATTTCTCTGCATTCATACTCT
GAATAACCAAAACTCCCAAAAAGTCCATATTTTCTCTCAACTGTCTTGTC
ACCTGAGCCAAAAACAGCAATTAAACCATAAACCAAAATCCTCGATTTGG
CTGAGAATCCCATACTCAAAGTTTGAGAAACAATGTTTCTAAACACGGAT
TCTTGGCACGCTAAAAGCCGAGGCTTATTAATTAACAAAAATGAGAGCTG
AGATCCAACTATCCCGCAACTCTCAAGGTGTGCTATGCTGGATAACAATC
TTGCCTGAGGGTTTTTGCGGGTAACAATGCGGTAGCATCTAATTAAAACG
GTTACCAAATCCTTATTCTTCCTATCATTCAACAAATGTTTCTGCAAGAT
TTCAACACAAGGATCCAACTTTGCCGTCTAACTTGCACCTAAAAATTGGG
GACAGAAGGCAAGAGTAAGGTCGAGCAACAATTGAACAGGCCTTTGTATA
TCTTTGCTACCATGTAATAGAAGTTAATGGCACAAAAACATTGATATGTA
TGTATTCAACCCTTATAGGTATATGGAAAATTCATGTACGCATTAGGTGT
ATACACCCATCCAATCTAAAATCAACATACACTCTTATAGCAGATAAATG
AATACCAAGGATTATCCTTATCAAATAACTATTCCTCTAAGTTTTTCCAT
GTTCAGATATTTAAATGTTTGTTTCCCTTTTTAATGTATATTTAAATAAG
GTTAAATTTTTTACCTGTGGAGTATTTAATAAGATTTTGCAGTCAATGCA
TCTTCATTGATTTTCTGGTTTATACCTAGCATTCACAAGTTTCATCCTAT
CGCATAACATTTTATCATCTTAAGAAAAAGGTTAGGAAATTAAATAAATT
GGAAGTAGGATTATTATCATCTTAAGAAAAGGGTTAGGAAATCAGAGCTA
ATTATGGTGACCAAAAAAGAAATAAACCGGAAGATGTGTATTTTCATAAC
CTTTAAAGTTTATAGCCCGTGTCCATAGACATGTACCCATGTCGCTGAAA
AGGTGCTGCGACTTCAGGCAAGTTGCTCCATGTATACTTAAAGGCCCTTG
AAAGCTAACTTATATCAAGATCTTTCTTCTTCTGAAGATGATGCCAAGTA
TGACCTTTGTAAGCTAGCAACAATTCCTCTGCCTCATCTGGAAAGCTTGA
TATATACTTCTGCACAAACACCTCCTCTGTCGAGAAAAACATTGCAACAC
GCACTTTTTCCTCCAAAAATTTCTTTGATTTCAAAATTTCCCAAACTCTG
AAACGAGGAAGCACTCTTCTTTCCATGCTCTGCATCAAAATTGGAGCATA
ACGGACTAAGTTCTCCTTTTCAAGCTTCACTGTGTTCAAAAAGAATTTAA
TTTTCAACTTCAACTTCTCCTCAGACCTTGTTAGCAAATATGGAGCCTTT
CCAAATATTTGTCTGCATTCATACTCTGAATAACCAAAACTCCTAAAAAG
TCTATATTTTCTCTCAACTGTCCTGTCACCTGAGCAAAAAACAGCAATTA
AACCATAAACTAACATCCTCGATTTGGCTGAGAATCCCATACTCAAAGTT
TGAGAAACAATGCCCCTACGCACGGATTCTTGGCACGCTAAAAGCCGAGG
CTGATTAATTAACAAAAATGAGAGCTGAGATCCAACTATCCCACAACTCT
CAAGGTATGCTATGCTGGATAACAATCTTGCTTGAGGGTTTTTGCAGGTA
ACAATGCGGTAGCATCTAATTAAAACGGTTACCAAATCCTTATTCTTCTT
ATCATTCAACAAATGTTTCTGCAAGATTTCAACACAAGGAACCAACTTTG
TCGTCAAACTTGCACCTAAAATTGGGGAACTTTTGGAAATGAGCTTACCC
AGGTCATGACCCACAATACCCAAGTCCTGAAAGACCTTGATTTTTGGTGC
AAGGGTCTTGTCGGGGTTAGCGAAGATAATTTGGGGAAATAAATGAGCAG
CAGACTGGATTTGGGAATTGGAGACACCAAGGTTTTTGAAAAAGTTAACC
ACAGATTGAGCATTTTCAAGGGATTTTAAACTAGAACGGCGGGCGGAGAG
AGTGAGCGCTTGGGTTTCAGAGAAATTGAAGGTTTCTATTAGGAATTGGA
AAAGGGCAGGGTTTGGGGTTTTTGAGATTTTGGCAAATGAAGAAAAGGAA
GGAAACGGAGGCTGTTTGGGGTTGAGAAGTAGATTGTACAAATGGGAATG
TGAAAGACCAGATAGTGATTTCACAATTTGCATTGGAATTAAAATTACAG
TGCAAATGGGGGTTAGGGTTTAAGTAAATCAAGATCAAGGAAACCAAATT
GAAAATCACTTCAAATGTCCAAAAATCAGCACGTAATCGACAAAGAAGAT
CACCAACTATAAAAGGATTAAAATTTTGAGATTATGCAGATGGAAACAAA
AGGGGGAAGAAACAAATACATATAATTGTATCACCAAATCGTTCTTCTTA
CTTTGATCAATTCAAGAGAATGAAACGTCTCAGTCGGGTCATTTCTTGTA
GAAAACTGTTGAAATGTAGAGTCCCTTGTGTGAATTATCATTGCCAGACG
GGAAGAATGAAGCTGGAAGGTGTCGTCTTCTCTCACACAAAAGCAACGTT
AACCCTTTGAGCTTTAGCACAATGTT
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mRNA from alignment at Chromosome01:989165..992340-

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G005600.1.v6.1 ID=Manes.01G005600.1.v6.1|Name=Manes.01G005600.1|organism=Manihot esculenta|type=mRNA|length=3176bp|location=Sequence derived from alignment at Chromosome01:989165..992340- (Manihot esculenta)
AACATTGTGCTAAAGCTCAAAGGGTTAACGTTGCTTTTGTGTGAGAGAAG ACGACACCTTCCAGCTTCATTCTTCCCGTCTGGCAATGATAATTCACACA AGGGACTCTACATTTCAACAGTTTTCTACAAGAAATGACCCGACTGAGAC GTTTCATTCTCTTGAATTGATCAAAGTAAGAAGAACGATTTGGTGATACA ATTATATGTATTTGTTTCTTCCCCCTTTTGTTTCCATCTGCATAATCTCA AAATTTTAATCCTTTTATAGTTGGTGATCTTCTTTGTCGATTACGTGCTG ATTTTTGGACATTTGAAGTGATTTTCAATTTGGTTTCCTTGATCTTGATT TACTTAAACCCTAACCCCCATTTGCACTGTAATTTTAATTCCAATGCAAA TTGTGAAATCACTATCTGGTCTTTCACATTCCCATTTGTACAATCTACTT CTCAACCCCAAACAGCCTCCGTTTCCTTCCTTTTCTTCATTTGCCAAAAT CTCAAAAACCCCAAACCCTGCCCTTTTCCAATTCCTAATAGAAACCTTCA ATTTCTCTGAAACCCAAGCGCTCACTCTCTCCGCCCGCCGTTCTAGTTTA AAATCCCTTGAAAATGCTCAATCTGTGGTTAACTTTTTCAAAAACCTTGG TGTCTCCAATTCCCAAATCCAGTCTGCTGCTCATTTATTTCCCCAAATTA TCTTCGCTAACCCCGACAAGACCCTTGCACCAAAAATCAAGGTCTTTCAG GACTTGGGTATTGTGGGTCATGACCTGGGTAAGCTCATTTCCAAAAGTTC CCCAATTTTAGGTGCAAGTTTGACGACAAAGTTGGTTCCTTGTGTTGAAA TCTTGCAGAAACATTTGTTGAATGATAAGAAGAATAAGGATTTGGTAACC GTTTTAATTAGATGCTACCGCATTGTTACCTGCAAAAACCCTCAAGCAAG ATTGTTATCCAGCATAGCATACCTTGAGAGTTGTGGGATAGTTGGATCTC AGCTCTCATTTTTGTTAATTAATCAGCCTCGGCTTTTAGCGTGCCAAGAA TCCGTGCGTAGGGGCATTGTTTCTCAAACTTTGAGTATGGGATTCTCAGC CAAATCGAGGATGTTAGTTTATGGTTTAATTGCTGTTTTTTGCTCAGGTG ACAGGACAGTTGAGAGAAAATATAGACTTTTTAGGAGTTTTGGTTATTCA GAGTATGAATGCAGACAAATATTTGGAAAGGCTCCATATTTGCTAACAAG GTCTGAGGAGAAGTTGAAGTTGAAAATTAAATTCTTTTTGAACACAGTGA AGCTTGAAAAGGAGAACTTAGTCCGTTATGCTCCAATTTTGATGCAGAGC ATGGAAAGAAGAGTGCTTCCTCGTTTCAGAGTTTGGGAAATTTTGAAATC AAAGAAATTTTTGGAGGAAAAAGTGCGTGTTGCAATGTTTTTCTCGACAG AGGAGGTGTTTGTGCAGAAGTATATATCAAGCTTTCCAGATGAGGCAGAG GAATTGTTGCTAGCTTACAAAGGTCATACTTGGCATCATCTTCAGAAGAA GAAAGATCTTGATATAAGTTAGCTTTCAAGGGCCTTTAAGTATACATGGA GCAACTTGCCTGAAGTCGCAGCACCTTTTCAGCGACATGGGTACATGTCT ATGGACACGGGCTATAAACTTTAAAGGTTATGAAAATACACATCTTCCGG TTTATTTCTTTTTTGGTCACCATAATTAGCTCTGATTTCCTAACCCTTTT CTTAAGATGATAATAATCCTACTTCCAATTTATTTAATTTCCTAACCTTT TTCTTAAGATGATAAAATGTTATGCGATAGGATGAAACTTGTGAATGCTA GGTATAAACCAGAAAATCAATGAAGATGCATTGACTGCAAAATCTTATTA AATACTCCACAGGTAAAAAATTTAACCTTATTTAAATATACATTAAAAAG GGAAACAAACATTTAAATATCTGAACATGGAAAAACTTAGAGGAATAGTT ATTTGATAAGGATAATCCTTGGTATTCATTTATCTGCTATAAGAGTGTAT GTTGATTTTAGATTGGATGGGTGTATACACCTAATGCGTACATGAATTTT CCATATACCTATAAGGGTTGAATACATACATATCAATGTTTTTGTGCCAT TAACTTCTATTACATGGTAGCAAAGATATACAAAGGCCTGTTCAATTGTT GCTCGACCTTACTCTTGCCTTCTGTCCCCAATTTTTAGGTGCAAGTTAGA CGGCAAAGTTGGATCCTTGTGTTGAAATCTTGCAGAAACATTTGTTGAAT GATAGGAAGAATAAGGATTTGGTAACCGTTTTAATTAGATGCTACCGCAT TGTTACCCGCAAAAACCCTCAGGCAAGATTGTTATCCAGCATAGCACACC TTGAGAGTTGCGGGATAGTTGGATCTCAGCTCTCATTTTTGTTAATTAAT AAGCCTCGGCTTTTAGCGTGCCAAGAATCCGTGTTTAGAAACATTGTTTC TCAAACTTTGAGTATGGGATTCTCAGCCAAATCGAGGATTTTGGTTTATG GTTTAATTGCTGTTTTTGGCTCAGGTGACAAGACAGTTGAGAGAAAATAT GGACTTTTTGGGAGTTTTGGTTATTCAGAGTATGAATGCAGAGAAATATT TAGAAAGGCTCCATATTTGCTAACAAGGTCTGAGGAGAAGTTGAAGTTGG GAATAAGTGTCTTTCTGAACTCAGTGAAGTTTAAGGAGGCCTTAGTCTGT AGTGCTTCAATTTTGATTCAGAGTATGGAAAAAAGAGTGGTTCCTGGTTT CAGAGTTTGGGATATTTTGAAATCAAAGAAATTATATAAGGAACCAAGCT TTCGTAAAATGTTGTTTATGACAGAGGTGATGTTTGTAGATAAGTTTATC TCAAGCTTTCCAGATGAGGCTGAGGAATTATTGTTAGCTTACAAAGGTCA TACTCTGGTTTCATCTTCCAAAGAGAAAAATTCTTGATGCGAGTTAGCTC TCAAAGGACCCTTTTTGTATTGGCTGCCTCCTTCAACACCCTAGAAAGTA ACTTGGCTTGGGTCAGTCAATCATATTTTAATTCAAATGTCTTTTTCTTT TCTTTTCTTTTCTTTTCTCTTGTATTAGTTTCAGCAATCTCATTCCAGTT TAGGGTTCAATTATATGCATATTATC
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Coding sequence (CDS) from alignment at Chromosome01:989165..992340-

>Manes.01G005600.1.v6.1 ID=Manes.01G005600.1.v6.1|Name=Manes.01G005600.1|organism=Manihot esculenta|type=CDS|length=1179bp|location=Sequence derived from alignment at Chromosome01:989165..992340- (Manihot esculenta)
ATGCAAATTGTGAAATCACTATCTGGTCTTTCACATTCCCATTTGTACAA
TCTACTTCTCAACCCCAAACAGCCTCCGTTTCCTTCCTTTTCTTCATTTG
CCAAAATCTCAAAAACCCCAAACCCTGCCCTTTTCCAATTCCTAATAGAA
ACCTTCAATTTCTCTGAAACCCAAGCGCTCACTCTCTCCGCCCGCCGTTC
TAGTTTAAAATCCCTTGAAAATGCTCAATCTGTGGTTAACTTTTTCAAAA
ACCTTGGTGTCTCCAATTCCCAAATCCAGTCTGCTGCTCATTTATTTCCC
CAAATTATCTTCGCTAACCCCGACAAGACCCTTGCACCAAAAATCAAGGT
CTTTCAGGACTTGGGTATTGTGGGTCATGACCTGGGTAAGCTCATTTCCA
AAAGTTCCCCAATTTTAGGTGCAAGTTTGACGACAAAGTTGGTTCCTTGT
GTTGAAATCTTGCAGAAACATTTGTTGAATGATAAGAAGAATAAGGATTT
GGTAACCGTTTTAATTAGATGCTACCGCATTGTTACCTGCAAAAACCCTC
AAGCAAGATTGTTATCCAGCATAGCATACCTTGAGAGTTGTGGGATAGTT
GGATCTCAGCTCTCATTTTTGTTAATTAATCAGCCTCGGCTTTTAGCGTG
CCAAGAATCCGTGCGTAGGGGCATTGTTTCTCAAACTTTGAGTATGGGAT
TCTCAGCCAAATCGAGGATGTTAGTTTATGGTTTAATTGCTGTTTTTTGC
TCAGGTGACAGGACAGTTGAGAGAAAATATAGACTTTTTAGGAGTTTTGG
TTATTCAGAGTATGAATGCAGACAAATATTTGGAAAGGCTCCATATTTGC
TAACAAGGTCTGAGGAGAAGTTGAAGTTGAAAATTAAATTCTTTTTGAAC
ACAGTGAAGCTTGAAAAGGAGAACTTAGTCCGTTATGCTCCAATTTTGAT
GCAGAGCATGGAAAGAAGAGTGCTTCCTCGTTTCAGAGTTTGGGAAATTT
TGAAATCAAAGAAATTTTTGGAGGAAAAAGTGCGTGTTGCAATGTTTTTC
TCGACAGAGGAGGTGTTTGTGCAGAAGTATATATCAAGCTTTCCAGATGA
GGCAGAGGAATTGTTGCTAGCTTACAAAGGTCATACTTGGCATCATCTTC
AGAAGAAGAAAGATCTTGATATAAGTTAG
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