Manes.01G005400.1.v6.1 (mRNA)

Overview


Name	Manes.01G005400.1
Unique Name	Manes.01G005400.1.v6.1
Type	mRNA
Organism	Manihot esculenta (Cassava)
Sequence length	1296

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chromosome01	chromosome	Chromosome01:946978..948273 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)	2015-07-22

Properties


Property Name	Value
Pacid	32359286
Longest	1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Manes.01G005400	Manes.01G005400.v6.1	Manihot esculenta	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G005400.1	Manes.01G005400.1.v6.1-protein	Manihot esculenta	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G005400.1.v6.1.CDS.1	Manes.01G005400.1.v6.1.CDS.1	Manihot esculenta	CDS
Manes.01G005400.1.v6.1.CDS.2	Manes.01G005400.1.v6.1.CDS.2	Manihot esculenta	CDS
Manes.01G005400.1.v6.1.CDS.3	Manes.01G005400.1.v6.1.CDS.3	Manihot esculenta	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA from alignment at Chromosome01:946978..948273+
coding sequnece from alignment at Chromosome01:946978..948273+

mRNA sequence

>Manes.01G005400.1.v6.1 ID=Manes.01G005400.1.v6.1|Name=Manes.01G005400.1|organism=Manihot esculenta|type=mRNA|length=1296bp
ATGAGTACTGAATCCTCCTCTTCCACCACTTCTATGCCTGTTACTTCATT
CTCTGCCCAACAAATTACACCACTTTGTGCCTATCATCAAGTGACAATTA
AACTTACCTCCACCAATTATCTGTTGTGGAAAACACAAATCACTCCGCTT
CTTGTGGGCCATCAATTAATGCATCATGTTGATGGGTCAAGTTCTGTTCC
TCCTAAGGAAATCAATGGTGCCCCCAATCCTGTTTATGTCGATTGGTTTG
TCAATGATCAAATAGTTTGGGATGGATTCTGAGTTCCTTATCTGAAACGG
TGTTGTCTCAAGTCATTGGTGCTACTATGGCTTACTGAGCCTGGACAAAA
CTACAGTCCACATATGCTTCTGGATCACGAACTCAAATTCCCACACTCAA
GAACTCCTTGCATTCTTTGTCTCATGGCAATGATTCCATTGCTACATATA
TGGATCGCACAAAACGGTTTTACGATCAACTTGCTGCGCTTGGATCTCCT
AATTGTGAGGATGATCTTGTTGATCATATTCTGCGTGGCCTTGGTGCAGA
TTACAGGCCTTTACAGGCAATATTGAGGCAAAATTATCCCCAACCTCCTT
TGATGATCTGTTTGGACTCTTGTTGTCTGAAGAATTGCAGCTTCAAACAT
TTTATGCTGTTATTCAACCATCAGCGGTTGCTCATTACACATCTAGTCAA
TCAACAATGGGTTCTATTTCTAGAGGGCCTGGTAGGGGCTGTGGTTATGG
TTCTGGCCATGGCAGATCCTCTCACCATAGTGCTTCTGATTCTTCAACTC
TCACCTGTTAGAATTGTCGAGGTCAAGGGCATATCTCACGATAATGTCCC
GGCCCAAAATTCAGTGCTAACAATGTTAAACCAACAGCCAATTTTACTGC
TCTCCTTTAGCCTCACCTCAGCCATGGGTCATGGATAGCAGGTATACCCA
TCACTTGACTTCTAAAATGGAAAATCTGGGGCTCCATTCTGAGTATACTG
GTCCAGAAGAAGTCACTCTTAGAGATGGTAAAAGCATTCCTATTTCTCGT
ATTGGTTCTAATATTATTTCTGTTGATTCTAACAAGTACAAGTTAGATAA
TATTCTTCATGGTCCTGCTTCTAGTTCTAATTTATTATCTGTCTTACAGT
TTACAAATTCTAATGATGTCTCTGTCGATCTCTTTCCAAATTTTTTTATT
ATCAAGGAATCACTAAAGATGGTCTTTATCAATTACCAACTGCGGCATCT
CCTGTTTGTCATTCGGTGTCTTTGTCTACTTGGCATGCTCGTTTAG

mRNA from alignment at Chromosome01:946978..948273+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Manes.01G005400.1.v6.1 ID=Manes.01G005400.1.v6.1|Name=Manes.01G005400.1|organism=Manihot esculenta|type=mRNA|length=1296bp|location=Sequence derived from alignment at Chromosome01:946978..948273+ (Manihot esculenta)
ATGAGTACTGAATCCTCCTCTTCCACCACTTCTATGCCTGTTACTTCATT
CTCTGCCCAACAAATTACACCACTTTGTGCCTATCATCAAGTGACAATTA
AACTTACCTCCACCAATTATCTGTTGTGGAAAACACAAATCACTCCGCTT
CTTGTGGGCCATCAATTAATGCATCATGTTGATGGGTCAAGTTCTGTTCC
TCCTAAGGAAATCAATGGTGCCCCCAATCCTGTTTATGTCGATTGGTTTG
TCAATGATCAAATAGTTTGGGATGGATTCTGAGTTCCTTATCTGAAACGG
TGTTGTCTCAAGTCATTGGTGCTACTATGGCTTACTGAGCCTGGACAAAA
CTACAGTCCACATATGCTTCTGGATCACGAACTCAAATTCCCACACTCAA
GAACTCCTTGCATTCTTTGTCTCATGGCAATGATTCCATTGCTACATATA
TGGATCGCACAAAACGGTTTTACGATCAACTTGCTGCGCTTGGATCTCCT
AATTGTGAGGATGATCTTGTTGATCATATTCTGCGTGGCCTTGGTGCAGA
TTACAGGCCTTTACAGGCAATATTGAGGCAAAATTATCCCCAACCTCCTT
TGATGATCTGTTTGGACTCTTGTTGTCTGAAGAATTGCAGCTTCAAACAT
TTTATGCTGTTATTCAACCATCAGCGGTTGCTCATTACACATCTAGTCAA
TCAACAATGGGTTCTATTTCTAGAGGGCCTGGTAGGGGCTGTGGTTATGG
TTCTGGCCATGGCAGATCCTCTCACCATAGTGCTTCTGATTCTTCAACTC
TCACCTGTTAGAATTGTCGAGGTCAAGGGCATATCTCACGATAATGTCCC
GGCCCAAAATTCAGTGCTAACAATGTTAAACCAACAGCCAATTTTACTGC
TCTCCTTTAGCCTCACCTCAGCCATGGGTCATGGATAGCAGGTATACCCA
TCACTTGACTTCTAAAATGGAAAATCTGGGGCTCCATTCTGAGTATACTG
GTCCAGAAGAAGTCACTCTTAGAGATGGTAAAAGCATTCCTATTTCTCGT
ATTGGTTCTAATATTATTTCTGTTGATTCTAACAAGTACAAGTTAGATAA
TATTCTTCATGGTCCTGCTTCTAGTTCTAATTTATTATCTGTCTTACAGT
TTACAAATTCTAATGATGTCTCTGTCGATCTCTTTCCAAATTTTTTTATT
ATCAAGGAATCACTAAAGATGGTCTTTATCAATTACCAACTGCGGCATCT
CCTGTTTGTCATTCGGTGTCTTTGTCTACTTGGCATGCTCGTTTAG

Coding sequence (CDS) from alignment at Chromosome01:946978..948273+

>Manes.01G005400.1.v6.1 ID=Manes.01G005400.1.v6.1|Name=Manes.01G005400.1|organism=Manihot esculenta|type=CDS|length=720bp|location=Sequence derived from alignment at Chromosome01:946978..948273+ (Manihot esculenta)
ATGAGTACTGAATCCTCCTCTTCCACCACTTCTATGCCTGTTACTTCATT
CTCTGCCCAACAAATTACACCACTTTGTGCCTATCATCAAGTGACAATTA
AACTTACCTCCACCAATTATCTGTTGTGGAAAACACAAATCACTCCGCTT
CTTGTGGGCCATCAATTAATGCATCATGTTGATGGGTCAAGTTCTGTTCC
TCCTAAGGAAATCAATGGTGCCCCCAATCCTGTTTATGTCGATTGGTTTT
CCACATATGCTTCTGGATCACGAACTCAAATTCCCACACTCAAGAACTCC
TTGCATTCTTTGTCTCATGGCAATGATTCCATTGCTACATATATGGATCG
CACAAAACGGTTTTACGATCAACTTGCTGCGCTTGGATCTCCTAATTGTG
AGGATGATCTTGTTGATCATATTCTGCGTGGCCTTGTCACTCTTAGAGAT
GGTAAAAGCATTCCTATTTCTCGTATTGGTTCTAATATTATTTCTGTTGA
TTCTAACAAGTACAAGTTAGATAATATTCTTCATGGTCCTGCTTCTAGTT
CTAATTTATTATCTGTCTTACAGTTTACAAATTCTAATGATGTCTCTGTC
GATCTCTTTCCAAATTTTTTTATTATCAAGGAATCACTAAAGATGGTCTT
TATCAATTACCAACTGCGGCATCTCCTGTTTGTCATTCGGTGTCTTTGTC
TACTTGGCATGCTCGTTTAG