Manes.01G005400.1.v6.1 (mRNA)

Overview
NameManes.01G005400.1
Unique NameManes.01G005400.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length1296
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:946978..948273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32359286
Longest1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G005400Manes.01G005400.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G005400.1Manes.01G005400.1.v6.1-proteinManihot esculentapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G005400.1.v6.1.CDS.1Manes.01G005400.1.v6.1.CDS.1Manihot esculentaCDS
Manes.01G005400.1.v6.1.CDS.2Manes.01G005400.1.v6.1.CDS.2Manihot esculentaCDS
Manes.01G005400.1.v6.1.CDS.3Manes.01G005400.1.v6.1.CDS.3Manihot esculentaCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G005400.1.v6.1 ID=Manes.01G005400.1.v6.1|Name=Manes.01G005400.1|organism=Manihot esculenta|type=mRNA|length=1296bp
ATGAGTACTGAATCCTCCTCTTCCACCACTTCTATGCCTGTTACTTCATT
CTCTGCCCAACAAATTACACCACTTTGTGCCTATCATCAAGTGACAATTA
AACTTACCTCCACCAATTATCTGTTGTGGAAAACACAAATCACTCCGCTT
CTTGTGGGCCATCAATTAATGCATCATGTTGATGGGTCAAGTTCTGTTCC
TCCTAAGGAAATCAATGGTGCCCCCAATCCTGTTTATGTCGATTGGTTTG
TCAATGATCAAATAGTTTGGGATGGATTCTGAGTTCCTTATCTGAAACGG
TGTTGTCTCAAGTCATTGGTGCTACTATGGCTTACTGAGCCTGGACAAAA
CTACAGTCCACATATGCTTCTGGATCACGAACTCAAATTCCCACACTCAA
GAACTCCTTGCATTCTTTGTCTCATGGCAATGATTCCATTGCTACATATA
TGGATCGCACAAAACGGTTTTACGATCAACTTGCTGCGCTTGGATCTCCT
AATTGTGAGGATGATCTTGTTGATCATATTCTGCGTGGCCTTGGTGCAGA
TTACAGGCCTTTACAGGCAATATTGAGGCAAAATTATCCCCAACCTCCTT
TGATGATCTGTTTGGACTCTTGTTGTCTGAAGAATTGCAGCTTCAAACAT
TTTATGCTGTTATTCAACCATCAGCGGTTGCTCATTACACATCTAGTCAA
TCAACAATGGGTTCTATTTCTAGAGGGCCTGGTAGGGGCTGTGGTTATGG
TTCTGGCCATGGCAGATCCTCTCACCATAGTGCTTCTGATTCTTCAACTC
TCACCTGTTAGAATTGTCGAGGTCAAGGGCATATCTCACGATAATGTCCC
GGCCCAAAATTCAGTGCTAACAATGTTAAACCAACAGCCAATTTTACTGC
TCTCCTTTAGCCTCACCTCAGCCATGGGTCATGGATAGCAGGTATACCCA
TCACTTGACTTCTAAAATGGAAAATCTGGGGCTCCATTCTGAGTATACTG
GTCCAGAAGAAGTCACTCTTAGAGATGGTAAAAGCATTCCTATTTCTCGT
ATTGGTTCTAATATTATTTCTGTTGATTCTAACAAGTACAAGTTAGATAA
TATTCTTCATGGTCCTGCTTCTAGTTCTAATTTATTATCTGTCTTACAGT
TTACAAATTCTAATGATGTCTCTGTCGATCTCTTTCCAAATTTTTTTATT
ATCAAGGAATCACTAAAGATGGTCTTTATCAATTACCAACTGCGGCATCT
CCTGTTTGTCATTCGGTGTCTTTGTCTACTTGGCATGCTCGTTTAG
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mRNA from alignment at Chromosome01:946978..948273+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G005400.1.v6.1 ID=Manes.01G005400.1.v6.1|Name=Manes.01G005400.1|organism=Manihot esculenta|type=mRNA|length=1296bp|location=Sequence derived from alignment at Chromosome01:946978..948273+ (Manihot esculenta)
ATGAGTACTGAATCCTCCTCTTCCACCACTTCTATGCCTGTTACTTCATT CTCTGCCCAACAAATTACACCACTTTGTGCCTATCATCAAGTGACAATTA AACTTACCTCCACCAATTATCTGTTGTGGAAAACACAAATCACTCCGCTT CTTGTGGGCCATCAATTAATGCATCATGTTGATGGGTCAAGTTCTGTTCC TCCTAAGGAAATCAATGGTGCCCCCAATCCTGTTTATGTCGATTGGTTTG TCAATGATCAAATAGTTTGGGATGGATTCTGAGTTCCTTATCTGAAACGG TGTTGTCTCAAGTCATTGGTGCTACTATGGCTTACTGAGCCTGGACAAAA CTACAGTCCACATATGCTTCTGGATCACGAACTCAAATTCCCACACTCAA GAACTCCTTGCATTCTTTGTCTCATGGCAATGATTCCATTGCTACATATA TGGATCGCACAAAACGGTTTTACGATCAACTTGCTGCGCTTGGATCTCCT AATTGTGAGGATGATCTTGTTGATCATATTCTGCGTGGCCTTGGTGCAGA TTACAGGCCTTTACAGGCAATATTGAGGCAAAATTATCCCCAACCTCCTT TGATGATCTGTTTGGACTCTTGTTGTCTGAAGAATTGCAGCTTCAAACAT TTTATGCTGTTATTCAACCATCAGCGGTTGCTCATTACACATCTAGTCAA TCAACAATGGGTTCTATTTCTAGAGGGCCTGGTAGGGGCTGTGGTTATGG TTCTGGCCATGGCAGATCCTCTCACCATAGTGCTTCTGATTCTTCAACTC TCACCTGTTAGAATTGTCGAGGTCAAGGGCATATCTCACGATAATGTCCC GGCCCAAAATTCAGTGCTAACAATGTTAAACCAACAGCCAATTTTACTGC TCTCCTTTAGCCTCACCTCAGCCATGGGTCATGGATAGCAGGTATACCCA TCACTTGACTTCTAAAATGGAAAATCTGGGGCTCCATTCTGAGTATACTG GTCCAGAAGAAGTCACTCTTAGAGATGGTAAAAGCATTCCTATTTCTCGT ATTGGTTCTAATATTATTTCTGTTGATTCTAACAAGTACAAGTTAGATAA TATTCTTCATGGTCCTGCTTCTAGTTCTAATTTATTATCTGTCTTACAGT TTACAAATTCTAATGATGTCTCTGTCGATCTCTTTCCAAATTTTTTTATT ATCAAGGAATCACTAAAGATGGTCTTTATCAATTACCAACTGCGGCATCT CCTGTTTGTCATTCGGTGTCTTTGTCTACTTGGCATGCTCGTTTAG
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Coding sequence (CDS) from alignment at Chromosome01:946978..948273+

>Manes.01G005400.1.v6.1 ID=Manes.01G005400.1.v6.1|Name=Manes.01G005400.1|organism=Manihot esculenta|type=CDS|length=720bp|location=Sequence derived from alignment at Chromosome01:946978..948273+ (Manihot esculenta)
ATGAGTACTGAATCCTCCTCTTCCACCACTTCTATGCCTGTTACTTCATT
CTCTGCCCAACAAATTACACCACTTTGTGCCTATCATCAAGTGACAATTA
AACTTACCTCCACCAATTATCTGTTGTGGAAAACACAAATCACTCCGCTT
CTTGTGGGCCATCAATTAATGCATCATGTTGATGGGTCAAGTTCTGTTCC
TCCTAAGGAAATCAATGGTGCCCCCAATCCTGTTTATGTCGATTGGTTTT
CCACATATGCTTCTGGATCACGAACTCAAATTCCCACACTCAAGAACTCC
TTGCATTCTTTGTCTCATGGCAATGATTCCATTGCTACATATATGGATCG
CACAAAACGGTTTTACGATCAACTTGCTGCGCTTGGATCTCCTAATTGTG
AGGATGATCTTGTTGATCATATTCTGCGTGGCCTTGTCACTCTTAGAGAT
GGTAAAAGCATTCCTATTTCTCGTATTGGTTCTAATATTATTTCTGTTGA
TTCTAACAAGTACAAGTTAGATAATATTCTTCATGGTCCTGCTTCTAGTT
CTAATTTATTATCTGTCTTACAGTTTACAAATTCTAATGATGTCTCTGTC
GATCTCTTTCCAAATTTTTTTATTATCAAGGAATCACTAAAGATGGTCTT
TATCAATTACCAACTGCGGCATCTCCTGTTTGTCATTCGGTGTCTTTGTC
TACTTGGCATGCTCGTTTAG
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