Manes.01G005200.1.v6.1 (mRNA)

Overview
NameManes.01G005200.1
Unique NameManes.01G005200.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length1095
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:937007..938101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32358156
Longest1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G005200Manes.01G005200.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G005200.1Manes.01G005200.1.v6.1-proteinManihot esculentapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G005200.1.v6.1.five_prime_UTR.1Manes.01G005200.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G005200.1.v6.1.CDS.1Manes.01G005200.1.v6.1.CDS.1Manihot esculentaCDS
Manes.01G005200.1.v6.1.CDS.2Manes.01G005200.1.v6.1.CDS.2Manihot esculentaCDS
Manes.01G005200.1.v6.1.CDS.3Manes.01G005200.1.v6.1.CDS.3Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G005200.1.v6.1.three_prime_UTR.1Manes.01G005200.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G005200.1.v6.1 ID=Manes.01G005200.1.v6.1|Name=Manes.01G005200.1|organism=Manihot esculenta|type=mRNA|length=1095bp
TTTGAATACCCATTTGTTTTCTCTATCTCTAATTGACAGAAAATGGATAT
GTGATGGGTAGCATTACAGGAGTCTCAGCCTCCAGTGCAATAGATAAAGT
ATGGAATATATCTCAAGCACTTGGAGATATAGCATTTGCATTTCCATATT
CCTTAATTCTTCTGGAAATACAGGTTTTGTGTAATTTCTGATTTTGGATT
AGAAACTTTTATTTTATTATTATTCATTATGGACATTGAATTAATTTGTA
AATCCTGAAGGATACTTTAAAATCACCTCCACCAGAGAATGAGACAATGA
AGAAGGCATCCACAATAGCACTCGTTGTGACTACATTTTTCTATATATGC
TGTGGAGGTTTTGGGTATGCAGCTTTTGGAGAAAATACACCTGGGAATCT
CTTGACAGGATTTGGATTTTATGAACCATATTGGCTTATTGATTTTGCTA
ATGCTTGCGTTGTGCTTCATCTACTTGGAGGCTATCAGGTATATATTTTG
ATTTGAACAACTATTACCTTCATCTATTCTTAAACAAGTTCAATGTCTCA
CTGTAAATTTTTTTTTTTTTTTTTTGCTATGACAGTAATAATAAAAGCTA
TATATATTTGGAATTTTCTAATATGGGCAGGTTTATAGTCAGCCAGTATT
TGCAACTATCGAGAAATGGTTTGCTGATAAGTATCCAAACAGCGAATTTA
TAAACCATAATTTCAGCATCAAACTCCCATTTTTGCCGGCTTTTGGATTA
AACCTCTTCAGGGTGTGCTTCAGAACAGCATATGTAGTGTCAATCACAGT
GATTTCAATCATATTTCCATACTTCAACCAAGTGATTGGAGTGTTAGGAG
CCTTAAACTTCTGGCCCTTGACAATATATTTTCCTGTGGAGATGTACTTG
AGGCAAAGAAATGTTGAAGCTTGGACAACCAAGTGGATAATGCTTCGAGC
ATTTAGCTTTCTGGTATTTTTTCTGGCATTGTTTGCTTTAATCGGATCTG
TTGAAGAGCTTATAAGTGCCAAGCTAAGCTAAAAATAGAAAATTTCATAA
ATGATTCAATTTATCAATTATTAGCATAGTATGAAGCCTCGCTTA
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mRNA from alignment at Chromosome01:937007..938101+

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G005200.1.v6.1 ID=Manes.01G005200.1.v6.1|Name=Manes.01G005200.1|organism=Manihot esculenta|type=mRNA|length=1095bp|location=Sequence derived from alignment at Chromosome01:937007..938101+ (Manihot esculenta)
TTTGAATACCCATTTGTTTTCTCTATCTCTAATTGACAGAAAATGGATAT GTGATGGGTAGCATTACAGGAGTCTCAGCCTCCAGTGCAATAGATAAAGT ATGGAATATATCTCAAGCACTTGGAGATATAGCATTTGCATTTCCATATT CCTTAATTCTTCTGGAAATACAGGTTTTGTGTAATTTCTGATTTTGGATT AGAAACTTTTATTTTATTATTATTCATTATGGACATTGAATTAATTTGTA AATCCTGAAGGATACTTTAAAATCACCTCCACCAGAGAATGAGACAATGA AGAAGGCATCCACAATAGCACTCGTTGTGACTACATTTTTCTATATATGC TGTGGAGGTTTTGGGTATGCAGCTTTTGGAGAAAATACACCTGGGAATCT CTTGACAGGATTTGGATTTTATGAACCATATTGGCTTATTGATTTTGCTA ATGCTTGCGTTGTGCTTCATCTACTTGGAGGCTATCAGGTATATATTTTG ATTTGAACAACTATTACCTTCATCTATTCTTAAACAAGTTCAATGTCTCA CTGTAAATTTTTTTTTTTTTTTTTTGCTATGACAGTAATAATAAAAGCTA TATATATTTGGAATTTTCTAATATGGGCAGGTTTATAGTCAGCCAGTATT TGCAACTATCGAGAAATGGTTTGCTGATAAGTATCCAAACAGCGAATTTA TAAACCATAATTTCAGCATCAAACTCCCATTTTTGCCGGCTTTTGGATTA AACCTCTTCAGGGTGTGCTTCAGAACAGCATATGTAGTGTCAATCACAGT GATTTCAATCATATTTCCATACTTCAACCAAGTGATTGGAGTGTTAGGAG CCTTAAACTTCTGGCCCTTGACAATATATTTTCCTGTGGAGATGTACTTG AGGCAAAGAAATGTTGAAGCTTGGACAACCAAGTGGATAATGCTTCGAGC ATTTAGCTTTCTGGTATTTTTTCTGGCATTGTTTGCTTTAATCGGATCTG TTGAAGAGCTTATAAGTGCCAAGCTAAGCTAAAAATAGAAAATTTCATAA ATGATTCAATTTATCAATTATTAGCATAGTATGAAGCCTCGCTTA
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Coding sequence (CDS) from alignment at Chromosome01:937007..938101+

>Manes.01G005200.1.v6.1 ID=Manes.01G005200.1.v6.1|Name=Manes.01G005200.1|organism=Manihot esculenta|type=CDS|length=750bp|location=Sequence derived from alignment at Chromosome01:937007..938101+ (Manihot esculenta)
ATGGGTAGCATTACAGGAGTCTCAGCCTCCAGTGCAATAGATAAAGTATG
GAATATATCTCAAGCACTTGGAGATATAGCATTTGCATTTCCATATTCCT
TAATTCTTCTGGAAATACAGGATACTTTAAAATCACCTCCACCAGAGAAT
GAGACAATGAAGAAGGCATCCACAATAGCACTCGTTGTGACTACATTTTT
CTATATATGCTGTGGAGGTTTTGGGTATGCAGCTTTTGGAGAAAATACAC
CTGGGAATCTCTTGACAGGATTTGGATTTTATGAACCATATTGGCTTATT
GATTTTGCTAATGCTTGCGTTGTGCTTCATCTACTTGGAGGCTATCAGGT
TTATAGTCAGCCAGTATTTGCAACTATCGAGAAATGGTTTGCTGATAAGT
ATCCAAACAGCGAATTTATAAACCATAATTTCAGCATCAAACTCCCATTT
TTGCCGGCTTTTGGATTAAACCTCTTCAGGGTGTGCTTCAGAACAGCATA
TGTAGTGTCAATCACAGTGATTTCAATCATATTTCCATACTTCAACCAAG
TGATTGGAGTGTTAGGAGCCTTAAACTTCTGGCCCTTGACAATATATTTT
CCTGTGGAGATGTACTTGAGGCAAAGAAATGTTGAAGCTTGGACAACCAA
GTGGATAATGCTTCGAGCATTTAGCTTTCTGGTATTTTTTCTGGCATTGT
TTGCTTTAATCGGATCTGTTGAAGAGCTTATAAGTGCCAAGCTAAGCTAA
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