Manes.01G005100.1.v6.1 (mRNA)

Overview


Name	Manes.01G005100.1
Unique Name	Manes.01G005100.1.v6.1
Type	mRNA
Organism	Manihot esculenta (Cassava)
Sequence length	4546

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chromosome01	chromosome	Chromosome01:927297..931842 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)	2015-07-22

Properties


Property Name	Value
Pacid	32359113
Longest	1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Manes.01G005100	Manes.01G005100.v6.1	Manihot esculenta	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G005100.1	Manes.01G005100.1.v6.1-protein	Manihot esculenta	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G005100.1.v6.1.CDS.1	Manes.01G005100.1.v6.1.CDS.1	Manihot esculenta	CDS
Manes.01G005100.1.v6.1.CDS.2	Manes.01G005100.1.v6.1.CDS.2	Manihot esculenta	CDS
Manes.01G005100.1.v6.1.CDS.3	Manes.01G005100.1.v6.1.CDS.3	Manihot esculenta	CDS
Manes.01G005100.1.v6.1.CDS.4	Manes.01G005100.1.v6.1.CDS.4	Manihot esculenta	CDS
Manes.01G005100.1.v6.1.CDS.5	Manes.01G005100.1.v6.1.CDS.5	Manihot esculenta	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G005100.1.v6.1.three_prime_UTR.1	Manes.01G005100.1.v6.1.three_prime_UTR.1	Manihot esculenta	three_prime_UTR

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA from alignment at Chromosome01:927297..931842+
coding sequnece from alignment at Chromosome01:927297..931842+

mRNA sequence

>Manes.01G005100.1.v6.1 ID=Manes.01G005100.1.v6.1|Name=Manes.01G005100.1|organism=Manihot esculenta|type=mRNA|length=4546bp
ATGGCAAGGGACAATATGGACGGCAACGGCACATGTAATAGCAGGAGTCA
TCGGAGCAGGCGTATTATCACTTGCGTGGAGCATGGCTCAACTAGGGTGG
ATTGCAGGTCCGTTAGCTATGATAGTCTTTGCAGCTGTCACCCTTGTTTC
TGCACACCTCATTTGTGACTGCTACAGATTCCCTGATCCTGAATCTGNNN
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TACAATTTAAGAATTGTTATATTTATTTTTTTTACCACAGCATAAAGCAA
CATATTAATTATATTTTTTAATAAATATAAATTACTGTTAAAATTATAAT
ATTATTAAATATATAATAAATTATTTATTAAAATATATTATTGTATGTTA
AAAAATTTAAATTTCTTTTATAATAATTTTAAATTAATGTAATTTTTTGC
TTTATTTTAATTTTATTATTATTTATATTTTTGAAAATAACTCCAATACT
ATTTCGATGACTTTTTCGCCATAATTTTTTTTAATTTTTATTTGTGTTGA
TTTAATGCAGGGCAATTCAAAGGTCGAATTGTTACCATAGAGAAGGACAT
GATGCTGTATGTAAATATGGGGATACTTCATTTATGCTTGTTTTTGGAAT
AATTCAAATGGTAGCATCACAAATACCAAATTTTCATGACATGGAATGGC
TCTCAATCCTTGCGGCAATCATGTCCTTTGCATACTCCTTTATAGGATTT
GGTCTTGGCTTTGCAAAAGTAATAGGTATATAATTTTTGGCTTTCAATTT
ATTTTTTTTCGCGTTGGTTTATTTTTTAAAAAATATTTTATGAAAAATAT
TTTCAATATTTTCTGACATTTATACTAATTAATAAAATTGGTCAATATAA
AATATTAAGATTTCTTAATTAAAAGAAAAATTAAATGATTTTAAGAAAAT
TAATTTTATTTCTTTTAAAGAGAAAGTCATTTTCCAGATTTTAAGATTTT
ATTACATTATTTTATATAAATTTATTAATATCTTTTATTTTTAATATAAT
TAAAAAATAAAAAATTAATTTTCTTAAAAATTATTTACGCATGCTGATGA
AAGGGTATTTTTAAAATTCACTTTTGCAATTACAGAAAATGGAAGGGTTG
AAGGAAGCATTAGTGGAGTCCCAACTGTTGATGTTGGTGATAAACTATGG
TTAGTTTTTGAAGCACTAGGGGATATTGCATTTGCCTATCCATACTCAAC
TATTCTTCTTGAGATTCAGGTTTTGCTTCTTTATTTGAAACTTGAGATAT
TGTCTAATTAATGGGTAATTTATAAATTTAATAAAACTTACAGTTTAGTT
TCTACTATTTTCAAAATAAATAATAAATTTAATTTTTAAACTTTTATTCT
ATTAATAAAGTAATTTTTTCTATTAAAATTACTGTTGCTACAATAAAGTC
TTTTAAAATTCGTTTTTTATAATAGTTTAATCACTTTAATTTTAATAATT
TAAAATAATTTAGCCCTTATAATTTAATATTTATAATAATTTAGTCTTTT
TAATTTAAATTATTTTTTTCAATTTTATTAATAAAATACAAATTCATAGG
CTAAATTATTTACTATTAAAAAAATAGAAACTAAGTTGTAAATTTTACTA
AATTTCAGGGACTATACTATAAATTATCCCTAATTAATAAACTATTTGGC
GATAAATGTAACCTAAAAATTAAATTTCCAAATGAAGGATACATTGAAAT
CACCTCCAGCAGAGAACAAGACCATGAAGAAGGCCTCAAGGGCTGCAATA
TTTATAACCACATTTTTTTACCTTTGCTGTGGATGCTTTGGATATGCAGC
CTTTGGCAATCAAACTCCTGGAAATCTATTGTCAGGGTTTGGATTTTATG
AGCCTTATTGGCTTATTGACTTTGCAAATGCTTGTGTTGTTCTTCATTTG
GTGGGAGGATACCAGGTATATATTACCATTTTCTTGTCAGCTTTTTCAGC
TTATTTTGTTAGCAGAACTTTTTTAGTAGAAATTTTTTTTATAAAATTGA
GAGACTAATTAATGAGTTTTCATACTGTATGAATTAAATAGTAAATGCTT
AACACTAAAACTAGCAGAATGATTAATTAATAAACTTTTTAAAATTTTAG
AGACAGTTAAAATATATTTTTCAAAATCGAAAAATCAGTCAATGAGTTTC
TGCATATCACAATAATTAGATAGTAAATTTCATTTTTAGAATTGAGTAAT
TGTTTGGCTGTGGATATTGAAATTCTGAGATGTTCTACATCTCAGATATT
TAGTCAGCCAGTATTTGCATTGGTGGAAGGCTGGCTAGCTAACAGATACC
CAAGAAGCTGGTTTGTGAATAAACCTTACACATTGAAACTTCCTCTGTTT
CCTCCTCTTCATGTGAATCCTTTGAGGCTATGTTTCAGAACTGCATATGT
TGCTTCAACAACTACTATAGCAATGGCCTTCCCTTACTTCAACCAAGTTT
TAGGAGTGCTTGGTGCATTGAACTTTTGGCCTTTGGCTATTTATTTTCCA
GTGGAAATGTATTTTGTACAGAAAAATATAGGAGCTTGGACAAGAAAATG
GATTGTTCTTAAGATGTTTAGCTTGCTTTGCTTTCTTTTCACAATTATGG
GATTAATTGGTTCAATTCAAGGTCTTATAAAAGCCAGATTTAGCTAAGAG
GCTTTCTCTGTATATTACTGTATTTATTTTAGTCAAATACTAGTAA

mRNA from alignment at Chromosome01:927297..931842+

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Manes.01G005100.1.v6.1 ID=Manes.01G005100.1.v6.1|Name=Manes.01G005100.1|organism=Manihot esculenta|type=mRNA|length=4546bp|location=Sequence derived from alignment at Chromosome01:927297..931842+ (Manihot esculenta)
ATGGCAAGGGACAATATGGACGGCAACGGCACATGTAATAGCAGGAGTCA
TCGGAGCAGGCGTATTATCACTTGCGTGGAGCATGGCTCAACTAGGGTGG
ATTGCAGGTCCGTTAGCTATGATAGTCTTTGCAGCTGTCACCCTTGTTTC
TGCACACCTCATTTGTGACTGCTACAGATTCCCTGATCCTGAATCTGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TACAATTTAAGAATTGTTATATTTATTTTTTTTACCACAGCATAAAGCAA
CATATTAATTATATTTTTTAATAAATATAAATTACTGTTAAAATTATAAT
ATTATTAAATATATAATAAATTATTTATTAAAATATATTATTGTATGTTA
AAAAATTTAAATTTCTTTTATAATAATTTTAAATTAATGTAATTTTTTGC
TTTATTTTAATTTTATTATTATTTATATTTTTGAAAATAACTCCAATACT
ATTTCGATGACTTTTTCGCCATAATTTTTTTTAATTTTTATTTGTGTTGA
TTTAATGCAGGGCAATTCAAAGGTCGAATTGTTACCATAGAGAAGGACAT
GATGCTGTATGTAAATATGGGGATACTTCATTTATGCTTGTTTTTGGAAT
AATTCAAATGGTAGCATCACAAATACCAAATTTTCATGACATGGAATGGC
TCTCAATCCTTGCGGCAATCATGTCCTTTGCATACTCCTTTATAGGATTT
GGTCTTGGCTTTGCAAAAGTAATAGGTATATAATTTTTGGCTTTCAATTT
ATTTTTTTTCGCGTTGGTTTATTTTTTAAAAAATATTTTATGAAAAATAT
TTTCAATATTTTCTGACATTTATACTAATTAATAAAATTGGTCAATATAA
AATATTAAGATTTCTTAATTAAAAGAAAAATTAAATGATTTTAAGAAAAT
TAATTTTATTTCTTTTAAAGAGAAAGTCATTTTCCAGATTTTAAGATTTT
ATTACATTATTTTATATAAATTTATTAATATCTTTTATTTTTAATATAAT
TAAAAAATAAAAAATTAATTTTCTTAAAAATTATTTACGCATGCTGATGA
AAGGGTATTTTTAAAATTCACTTTTGCAATTACAGAAAATGGAAGGGTTG
AAGGAAGCATTAGTGGAGTCCCAACTGTTGATGTTGGTGATAAACTATGG
TTAGTTTTTGAAGCACTAGGGGATATTGCATTTGCCTATCCATACTCAAC
TATTCTTCTTGAGATTCAGGTTTTGCTTCTTTATTTGAAACTTGAGATAT
TGTCTAATTAATGGGTAATTTATAAATTTAATAAAACTTACAGTTTAGTT
TCTACTATTTTCAAAATAAATAATAAATTTAATTTTTAAACTTTTATTCT
ATTAATAAAGTAATTTTTTCTATTAAAATTACTGTTGCTACAATAAAGTC
TTTTAAAATTCGTTTTTTATAATAGTTTAATCACTTTAATTTTAATAATT
TAAAATAATTTAGCCCTTATAATTTAATATTTATAATAATTTAGTCTTTT
TAATTTAAATTATTTTTTTCAATTTTATTAATAAAATACAAATTCATAGG
CTAAATTATTTACTATTAAAAAAATAGAAACTAAGTTGTAAATTTTACTA
AATTTCAGGGACTATACTATAAATTATCCCTAATTAATAAACTATTTGGC
GATAAATGTAACCTAAAAATTAAATTTCCAAATGAAGGATACATTGAAAT
CACCTCCAGCAGAGAACAAGACCATGAAGAAGGCCTCAAGGGCTGCAATA
TTTATAACCACATTTTTTTACCTTTGCTGTGGATGCTTTGGATATGCAGC
CTTTGGCAATCAAACTCCTGGAAATCTATTGTCAGGGTTTGGATTTTATG
AGCCTTATTGGCTTATTGACTTTGCAAATGCTTGTGTTGTTCTTCATTTG
GTGGGAGGATACCAGGTATATATTACCATTTTCTTGTCAGCTTTTTCAGC
TTATTTTGTTAGCAGAACTTTTTTAGTAGAAATTTTTTTTATAAAATTGA
GAGACTAATTAATGAGTTTTCATACTGTATGAATTAAATAGTAAATGCTT
AACACTAAAACTAGCAGAATGATTAATTAATAAACTTTTTAAAATTTTAG
AGACAGTTAAAATATATTTTTCAAAATCGAAAAATCAGTCAATGAGTTTC
TGCATATCACAATAATTAGATAGTAAATTTCATTTTTAGAATTGAGTAAT
TGTTTGGCTGTGGATATTGAAATTCTGAGATGTTCTACATCTCAGATATT
TAGTCAGCCAGTATTTGCATTGGTGGAAGGCTGGCTAGCTAACAGATACC
CAAGAAGCTGGTTTGTGAATAAACCTTACACATTGAAACTTCCTCTGTTT
CCTCCTCTTCATGTGAATCCTTTGAGGCTATGTTTCAGAACTGCATATGT
TGCTTCAACAACTACTATAGCAATGGCCTTCCCTTACTTCAACCAAGTTT
TAGGAGTGCTTGGTGCATTGAACTTTTGGCCTTTGGCTATTTATTTTCCA
GTGGAAATGTATTTTGTACAGAAAAATATAGGAGCTTGGACAAGAAAATG
GATTGTTCTTAAGATGTTTAGCTTGCTTTGCTTTCTTTTCACAATTATGG
GATTAATTGGTTCAATTCAAGGTCTTATAAAAGCCAGATTTAGCTAAGAG
GCTTTCTCTGTATATTACTGTATTTATTTTAGTCAAATACTAGTAA

Coding sequence (CDS) from alignment at Chromosome01:927297..931842+

>Manes.01G005100.1.v6.1 ID=Manes.01G005100.1.v6.1|Name=Manes.01G005100.1|organism=Manihot esculenta|type=CDS|length=1086bp|location=Sequence derived from alignment at Chromosome01:927297..931842+ (Manihot esculenta)
ATGGCAAGGGACAATATGGACGGCAACGGCACATGTAATAGCAGGAGTCA
TCGGAGCAGGCGTATTATCACTTGCGTGGAGCATGGCTCAACTAGGGTGG
ATTGCAGGGCAATTCAAAGGTCGAATTGTTACCATAGAGAAGGACATGAT
GCTGTATGTAAATATGGGGATACTTCATTTATGCTTGTTTTTGGAATAAT
TCAAATGGTAGCATCACAAATACCAAATTTTCATGACATGGAATGGCTCT
CAATCCTTGCGGCAATCATGTCCTTTGCATACTCCTTTATAGGATTTGGT
CTTGGCTTTGCAAAAGTAATAGAAAATGGAAGGGTTGAAGGAAGCATTAG
TGGAGTCCCAACTGTTGATGTTGGTGATAAACTATGGTTAGTTTTTGAAG
CACTAGGGGATATTGCATTTGCCTATCCATACTCAACTATTCTTCTTGAG
ATTCAGGATACATTGAAATCACCTCCAGCAGAGAACAAGACCATGAAGAA
GGCCTCAAGGGCTGCAATATTTATAACCACATTTTTTTACCTTTGCTGTG
GATGCTTTGGATATGCAGCCTTTGGCAATCAAACTCCTGGAAATCTATTG
TCAGGGTTTGGATTTTATGAGCCTTATTGGCTTATTGACTTTGCAAATGC
TTGTGTTGTTCTTCATTTGGTGGGAGGATACCAGATATTTAGTCAGCCAG
TATTTGCATTGGTGGAAGGCTGGCTAGCTAACAGATACCCAAGAAGCTGG
TTTGTGAATAAACCTTACACATTGAAACTTCCTCTGTTTCCTCCTCTTCA
TGTGAATCCTTTGAGGCTATGTTTCAGAACTGCATATGTTGCTTCAACAA
CTACTATAGCAATGGCCTTCCCTTACTTCAACCAAGTTTTAGGAGTGCTT
GGTGCATTGAACTTTTGGCCTTTGGCTATTTATTTTCCAGTGGAAATGTA
TTTTGTACAGAAAAATATAGGAGCTTGGACAAGAAAATGGATTGTTCTTA
AGATGTTTAGCTTGCTTTGCTTTCTTTTCACAATTATGGGATTAATTGGT
TCAATTCAAGGTCTTATAAAAGCCAGATTTAGCTAA