Manes.01G004600.1.v6.1 (mRNA)

Overview
NameManes.01G004600.1
Unique NameManes.01G004600.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length1364
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:847537..848900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32357484
Longest1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G004600Manes.01G004600.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G004600.1Manes.01G004600.1.v6.1-proteinManihot esculentapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G004600.1.v6.1.CDS.1Manes.01G004600.1.v6.1.CDS.1Manihot esculentaCDS
Manes.01G004600.1.v6.1.CDS.2Manes.01G004600.1.v6.1.CDS.2Manihot esculentaCDS
Manes.01G004600.1.v6.1.CDS.3Manes.01G004600.1.v6.1.CDS.3Manihot esculentaCDS
Manes.01G004600.1.v6.1.CDS.4Manes.01G004600.1.v6.1.CDS.4Manihot esculentaCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G004600.1.v6.1 ID=Manes.01G004600.1.v6.1|Name=Manes.01G004600.1|organism=Manihot esculenta|type=mRNA|length=1364bp
ATGTCGGCCTTTGTTGGAAAATATGCTGGTAATCTTCGTCTATTTGACAT
TATTTGATTTTTCAATGATAGTTCAAAAATAAATTTAGATTAAATAATAA
AATTTGACCATTTGAAGAAAATTTGGTCTTTTTGCCTATAAAAATTCATG
ATACAAACATTTCATTATATGCAACATTTAGTATTGATAGCCATATCAAA
CTTCTAAAAAAAGTGTATCTTCAGATGAGCTGATAAAGACTGCCAAGTAC
ATTGCCACTCCAGGGAAGGGCATTTTGGCAGCAGATGAGAGCACAGGCAC
CATTGGCAAGCGTCTCGCAAGCATAAGCGTTGAGAATATTGAGTCCAATC
GCCAAGCCCTCCGCGAGCTCCTCTTTACTTCCCCTAATGCTCTCTCCCAC
CTCTCGGGTGTCATCCTCTTCGAAGAAACTCTCTACCAGAAAACCTCAGA
TGGGAAACCATTCGTTGATGTTCTCCAAGAAAACAACGTCGTTCCAGGGA
TCAAAGTTGACAAGGGCACTGTTGAATTAGCAGGCACTAATGGTGAAACT
ACAACCCAAGGCTTTGACTCATTGGGTGCTCGTTGCCAACAGTATTATAA
AGCAGGTGCTAGATTTGCAAAATGGCGAGCAGTACTGAAGATTGGTCCAA
CTGAGCCATCTGAATTGGCAATCCAACAGAATGCACAATTGCACAGGGCT
TGGCTCGTTATGCTATCATTTGTCAGGAGAATGGGCTTGTGCCCATTGTC
GAACCAGAGGTCTTGACTGATGGTTCTCATGACATCAAGAAGTGTGCTTA
TGTGACTGAGATTGTTCTTGCTGCAGTTTATAAGGCACTCAATGACCAGC
ATGTTCTTCTTGAAGGCACACTCCTTAAACCCAACATGGTTACTCCTGGC
TCAGATAGCCCTAAGGTAAAAGCTGACAAATTCATCAATTCACTGTAATT
TTACAAGATTGCAATAAATTTCTTTTTTAACAAAAGAATTTAATTTTTTT
AATTTAAAAAAGTTGATATTTTTCTTTTGAGAAAGCTCAAAAATCCTCGC
ATCAAATTAGCAGCTCTGAATTTTATTTTCTTTATTTGTTTATTTATTTT
GCCAGTAAACTTTATCCTTGCATTAAAGTGTAGGTAGCAGCAGAGGTGAT
AGCTGAGTACACAGTGACTGCACTACGCCGAACTGTTCCGCCGGCAGTTC
CAGGCATTGTATTCTTGTCCGGTGGACAAAGTGAGGAGGAGGCAACGTTG
AACCTGAATGCAATGAATAAGCTTGCAGTATTAAAGCCATGGACACTATC
CTTCTCCTTTGGGAGAGCTTTGCAACAAAGCACACTAAAAATATGGGCTG
GAAAGAAGGAGAAC
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mRNA from alignment at Chromosome01:847537..848900+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G004600.1.v6.1 ID=Manes.01G004600.1.v6.1|Name=Manes.01G004600.1|organism=Manihot esculenta|type=mRNA|length=1364bp|location=Sequence derived from alignment at Chromosome01:847537..848900+ (Manihot esculenta)
ATGTCGGCCTTTGTTGGAAAATATGCTGGTAATCTTCGTCTATTTGACAT TATTTGATTTTTCAATGATAGTTCAAAAATAAATTTAGATTAAATAATAA AATTTGACCATTTGAAGAAAATTTGGTCTTTTTGCCTATAAAAATTCATG ATACAAACATTTCATTATATGCAACATTTAGTATTGATAGCCATATCAAA CTTCTAAAAAAAGTGTATCTTCAGATGAGCTGATAAAGACTGCCAAGTAC ATTGCCACTCCAGGGAAGGGCATTTTGGCAGCAGATGAGAGCACAGGCAC CATTGGCAAGCGTCTCGCAAGCATAAGCGTTGAGAATATTGAGTCCAATC GCCAAGCCCTCCGCGAGCTCCTCTTTACTTCCCCTAATGCTCTCTCCCAC CTCTCGGGTGTCATCCTCTTCGAAGAAACTCTCTACCAGAAAACCTCAGA TGGGAAACCATTCGTTGATGTTCTCCAAGAAAACAACGTCGTTCCAGGGA TCAAAGTTGACAAGGGCACTGTTGAATTAGCAGGCACTAATGGTGAAACT ACAACCCAAGGCTTTGACTCATTGGGTGCTCGTTGCCAACAGTATTATAA AGCAGGTGCTAGATTTGCAAAATGGCGAGCAGTACTGAAGATTGGTCCAA CTGAGCCATCTGAATTGGCAATCCAACAGAATGCACAATTGCACAGGGCT TGGCTCGTTATGCTATCATTTGTCAGGAGAATGGGCTTGTGCCCATTGTC GAACCAGAGGTCTTGACTGATGGTTCTCATGACATCAAGAAGTGTGCTTA TGTGACTGAGATTGTTCTTGCTGCAGTTTATAAGGCACTCAATGACCAGC ATGTTCTTCTTGAAGGCACACTCCTTAAACCCAACATGGTTACTCCTGGC TCAGATAGCCCTAAGGTAAAAGCTGACAAATTCATCAATTCACTGTAATT TTACAAGATTGCAATAAATTTCTTTTTTAACAAAAGAATTTAATTTTTTT AATTTAAAAAAGTTGATATTTTTCTTTTGAGAAAGCTCAAAAATCCTCGC ATCAAATTAGCAGCTCTGAATTTTATTTTCTTTATTTGTTTATTTATTTT GCCAGTAAACTTTATCCTTGCATTAAAGTGTAGGTAGCAGCAGAGGTGAT AGCTGAGTACACAGTGACTGCACTACGCCGAACTGTTCCGCCGGCAGTTC CAGGCATTGTATTCTTGTCCGGTGGACAAAGTGAGGAGGAGGCAACGTTG AACCTGAATGCAATGAATAAGCTTGCAGTATTAAAGCCATGGACACTATC CTTCTCCTTTGGGAGAGCTTTGCAACAAAGCACACTAAAAATATGGGCTG GAAAGAAGGAGAAC
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Coding sequence (CDS) from alignment at Chromosome01:847537..848900+

>Manes.01G004600.1.v6.1 ID=Manes.01G004600.1.v6.1|Name=Manes.01G004600.1|organism=Manihot esculenta|type=CDS|length=915bp|location=Sequence derived from alignment at Chromosome01:847537..848900+ (Manihot esculenta)
ATGTCGGCCTTTGTTGGAAAATATGCTGATGAGCTGATAAAGACTGCCAA
GTACATTGCCACTCCAGGGAAGGGCATTTTGGCAGCAGATGAGAGCACAG
GCACCATTGGCAAGCGTCTCGCAAGCATAAGCGTTGAGAATATTGAGTCC
AATCGCCAAGCCCTCCGCGAGCTCCTCTTTACTTCCCCTAATGCTCTCTC
CCACCTCTCGGGTGTCATCCTCTTCGAAGAAACTCTCTACCAGAAAACCT
CAGATGGGAAACCATTCGTTGATGTTCTCCAAGAAAACAACGTCGTTCCA
GGGATCAAAGTTGACAAGGGCACTGTTGAATTAGCAGGCACTAATGGTGA
AACTACAACCCAAGGCTTTGACTCATTGGGTGCTCGTTGCCAACAGTATT
ATAAAGCAGGTGCTAGATTTGCAAAATGGCGAGCAGTACTGAAGATTGAA
TGCACAATTGCACAGGGCTTGGCTCGTTATGCTATCATTTGTCAGGAGAA
TGGGCTTGTGCCCATTGTCGAACCAGAGGTCTTGACTGATGGTTCTCATG
ACATCAAGAAGTGTGCTTATGTGACTGAGATTGTTCTTGCTGCAGTTTAT
AAGGCACTCAATGACCAGCATGTTCTTCTTGAAGGCACACTCCTTAAACC
CAACATGGTTACTCCTGGCTCAGATAGCCCTAAGGTAGCAGCAGAGGTGA
TAGCTGAGTACACAGTGACTGCACTACGCCGAACTGTTCCGCCGGCAGTT
CCAGGCATTGTATTCTTGTCCGGTGGACAAAGTGAGGAGGAGGCAACGTT
GAACCTGAATGCAATGAATAAGCTTGCAGTATTAAAGCCATGGACACTAT
CCTTCTCCTTTGGGAGAGCTTTGCAACAAAGCACACTAAAAATATGGGCT
GGAAAGAAGGAGAAC
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