Manes.01G004400.1.v6.1 (mRNA)

Overview


Name	Manes.01G004400.1
Unique Name	Manes.01G004400.1.v6.1
Type	mRNA
Organism	Manihot esculenta (Cassava)
Sequence length	927

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chromosome01	chromosome	Chromosome01:815791..816717 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)	2015-07-22

Properties


Property Name	Value
Pacid	32359245
Longest	1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Manes.01G004400	Manes.01G004400.v6.1	Manihot esculenta	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G004400.1	Manes.01G004400.1.v6.1-protein	Manihot esculenta	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G004400.1.v6.1.CDS.1	Manes.01G004400.1.v6.1.CDS.1	Manihot esculenta	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA from alignment at Chromosome01:815791..816717+
coding sequnece from alignment at Chromosome01:815791..816717+

mRNA sequence

>Manes.01G004400.1.v6.1 ID=Manes.01G004400.1.v6.1|Name=Manes.01G004400.1|organism=Manihot esculenta|type=mRNA|length=927bp
ATGCATAATCATCTATCGGGAGCCGAACCATTTCCGGTTCCAAGACCGTC
GCCGCTGTCATCCGAGAAAGAAACTGAGGATCAATCAACAAACAAAGCTC
CTCAAAGTTGTGTCATCCTTACCTATGACGCCAACGTAGCAGAATCCTCT
CGCCTCGTAACAGTGACATGGAACAAAAACCTTATGAACTATTCTCTTAC
AATTAGCGTTGAAAACTTTTCAAATGAAAATCCTTACATTTGCAAGATTG
ATTTAAAGGGTTGGCAGTTTTGGGGAAGAAAAGGTATAAAATCCTTCCAA
GTTGATGGAAAACGAGTAGAAATTTACTGGGATTTTCGACATGCAAAATT
TACGAACAATCCTGAGCCTTCCTCGGATTATTATGTGGCTCTAGTTTATG
ATGAAGAGGTTGTCCTAATGCTCGGAGATTTAAAGAAAGATGCTTACAAA
AGAACTAAAAAAAGACCATCGTTGATAGAACCAATATTGTTGTGCAAGAA
AGAAAATGTTTATGGCAAGAAAATATTTTGCAGCAAAGCAATGCTACACA
ATGAGAAGAAAGAACACGACATTGTCATAGAAATGTCATCAGGGATTGGT
GATCCTGAGCTGTGGATCAGCATTGACAGCTTTGAGGTAATTCATGTAAT
GAATTTGAATTGGAGATTTAGAGGGAATGAGAAAGTGACTATGGTGGACG
ATGTGGTGGTAGAGATTTTCTGGGACGTCCATGATTGGTTGTTTAATAGC
TCAGCATCAGCAGCCATGCAGGGCAATGGGTTGTTCATTTTCAAGCCTGG
ATTGGCAGGTTCTGACTCTAAGATTAATCAAAAAGGAGATGATGGTATTG
GTGTGAGGTATGATTCGCCAGCAGAGAGGAGTGCTTCAGAGTTTTTTCAT
GTGATTTACGCTTGGAGAATTGATTAA

mRNA from alignment at Chromosome01:815791..816717+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Manes.01G004400.1.v6.1 ID=Manes.01G004400.1.v6.1|Name=Manes.01G004400.1|organism=Manihot esculenta|type=mRNA|length=927bp|location=Sequence derived from alignment at Chromosome01:815791..816717+ (Manihot esculenta)
ATGCATAATCATCTATCGGGAGCCGAACCATTTCCGGTTCCAAGACCGTC
GCCGCTGTCATCCGAGAAAGAAACTGAGGATCAATCAACAAACAAAGCTC
CTCAAAGTTGTGTCATCCTTACCTATGACGCCAACGTAGCAGAATCCTCT
CGCCTCGTAACAGTGACATGGAACAAAAACCTTATGAACTATTCTCTTAC
AATTAGCGTTGAAAACTTTTCAAATGAAAATCCTTACATTTGCAAGATTG
ATTTAAAGGGTTGGCAGTTTTGGGGAAGAAAAGGTATAAAATCCTTCCAA
GTTGATGGAAAACGAGTAGAAATTTACTGGGATTTTCGACATGCAAAATT
TACGAACAATCCTGAGCCTTCCTCGGATTATTATGTGGCTCTAGTTTATG
ATGAAGAGGTTGTCCTAATGCTCGGAGATTTAAAGAAAGATGCTTACAAA
AGAACTAAAAAAAGACCATCGTTGATAGAACCAATATTGTTGTGCAAGAA
AGAAAATGTTTATGGCAAGAAAATATTTTGCAGCAAAGCAATGCTACACA
ATGAGAAGAAAGAACACGACATTGTCATAGAAATGTCATCAGGGATTGGT
GATCCTGAGCTGTGGATCAGCATTGACAGCTTTGAGGTAATTCATGTAAT
GAATTTGAATTGGAGATTTAGAGGGAATGAGAAAGTGACTATGGTGGACG
ATGTGGTGGTAGAGATTTTCTGGGACGTCCATGATTGGTTGTTTAATAGC
TCAGCATCAGCAGCCATGCAGGGCAATGGGTTGTTCATTTTCAAGCCTGG
ATTGGCAGGTTCTGACTCTAAGATTAATCAAAAAGGAGATGATGGTATTG
GTGTGAGGTATGATTCGCCAGCAGAGAGGAGTGCTTCAGAGTTTTTTCAT
GTGATTTACGCTTGGAGAATTGATTAA

Coding sequence (CDS) from alignment at Chromosome01:815791..816717+

>Manes.01G004400.1.v6.1 ID=Manes.01G004400.1.v6.1|Name=Manes.01G004400.1|organism=Manihot esculenta|type=CDS|length=927bp|location=Sequence derived from alignment at Chromosome01:815791..816717+ (Manihot esculenta)
ATGCATAATCATCTATCGGGAGCCGAACCATTTCCGGTTCCAAGACCGTC
GCCGCTGTCATCCGAGAAAGAAACTGAGGATCAATCAACAAACAAAGCTC
CTCAAAGTTGTGTCATCCTTACCTATGACGCCAACGTAGCAGAATCCTCT
CGCCTCGTAACAGTGACATGGAACAAAAACCTTATGAACTATTCTCTTAC
AATTAGCGTTGAAAACTTTTCAAATGAAAATCCTTACATTTGCAAGATTG
ATTTAAAGGGTTGGCAGTTTTGGGGAAGAAAAGGTATAAAATCCTTCCAA
GTTGATGGAAAACGAGTAGAAATTTACTGGGATTTTCGACATGCAAAATT
TACGAACAATCCTGAGCCTTCCTCGGATTATTATGTGGCTCTAGTTTATG
ATGAAGAGGTTGTCCTAATGCTCGGAGATTTAAAGAAAGATGCTTACAAA
AGAACTAAAAAAAGACCATCGTTGATAGAACCAATATTGTTGTGCAAGAA
AGAAAATGTTTATGGCAAGAAAATATTTTGCAGCAAAGCAATGCTACACA
ATGAGAAGAAAGAACACGACATTGTCATAGAAATGTCATCAGGGATTGGT
GATCCTGAGCTGTGGATCAGCATTGACAGCTTTGAGGTAATTCATGTAAT
GAATTTGAATTGGAGATTTAGAGGGAATGAGAAAGTGACTATGGTGGACG
ATGTGGTGGTAGAGATTTTCTGGGACGTCCATGATTGGTTGTTTAATAGC
TCAGCATCAGCAGCCATGCAGGGCAATGGGTTGTTCATTTTCAAGCCTGG
ATTGGCAGGTTCTGACTCTAAGATTAATCAAAAAGGAGATGATGGTATTG
GTGTGAGGTATGATTCGCCAGCAGAGAGGAGTGCTTCAGAGTTTTTTCAT
GTGATTTACGCTTGGAGAATTGATTAA