Manes.01G003800.1.v6.1 (mRNA)

Overview
NameManes.01G003800.1
Unique NameManes.01G003800.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length3015
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:752759..755773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32357971
Longest1
AncestorIdentifiercassava4.1_002747m.v4.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G003800Manes.01G003800.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G003800.1Manes.01G003800.1.v6.1-proteinManihot esculentapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G003800.1.v6.1.CDS.3Manes.01G003800.1.v6.1.CDS.3Manihot esculentaCDS
Manes.01G003800.1.v6.1.CDS.2Manes.01G003800.1.v6.1.CDS.2Manihot esculentaCDS
Manes.01G003800.1.v6.1.CDS.1Manes.01G003800.1.v6.1.CDS.1Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G003800.1.v6.1.three_prime_UTR.1Manes.01G003800.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G003800.1.v6.1.five_prime_UTR.1Manes.01G003800.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G003800.1.v6.1 ID=Manes.01G003800.1.v6.1|Name=Manes.01G003800.1|organism=Manihot esculenta|type=mRNA|length=3015bp
TATAATTGCTAAACCTTACTGCATTAAGGAAATAATCAAAACCAAAAATA
GAGAACCATCTAACCAGGAAGTTCAAAACACTATCCAAATATCTCAGGAA
CGATGTAATAGCTAACATACTTAAAACAGTACCACAACACTAGTAAGAAG
TTAAAATCACAAGTGATAGGCTAAGGGCTTAATCAACTTCCTCCATCTTG
GAACCCTCAGCATCGGCATCAGCATCCTCCAAGGCCGGCATGTCAGCATC
TCCCTCACCAGCATCCTCATCGATGCTCAATCCAAGCTTCAACATCCTGT
GGATCCTGTTACCGAAGGTATTTGGGTCATCAAGGCTGAATCCAGATGTG
AGCAGAGCAGTCTCGAATAGTAGCAGCACAAGATCCTTCACCGACTTGTC
GTTCTTGTCAGCATCAGCTCTCTTTCTTAGTTCCTCCATGATGGGATTTT
CTGGATTGATCTCCATTGTCTTTTTGCTTGACATGTACCCAGCCATGCTG
CTGTCCCTCAAAGCTTGTGCTTTCATAATTCTTTCCATGTTGGCAGTCCA
CCCATATTCACCCGTGACCAAGCAGCAGGGAGAATCCACAACACGGTCTG
AGACAACAACCTTTTCTACCCTGTCTCCCAACACATCCTTTATTACCTTG
CAGAGACCCTCAAACTTCTCCTTGAGTTCTTCCTTCCTTTTCTTCTCATC
TTCACTTTCATCAATTTTCAAACCTTCCTTTGTGGCAGAAACAAGCTTCT
TGCCTTCAAACTCCTTGAGCTGACCAACAGCATACTCATCGATAGCATCA
ACCATGAAAAGGACTTCATAGCCCTTCTTCTTCAACTTCTCAAGGAATGG
GGAGTTTTCAACTGCCTTCTTGCTTTCACCAGTGATGTAGTAGATATCAT
TTTGGCCCTCCTTCATTCTGGTCACGTAATCCTTGAGGCTAGTCATCTCA
TCGCCACTCTTGGTGGAGTGGTATCGAAGCAATTCAGCAAGCTTAGTCTT
GTTTTGGGAGTCCTCATGGATACCAAGCTTGAGGTTCTTAGAGAATGCCT
CGTAGAATTTGTTGTAATCTTCCTTGTTTTCAGCAATCTCAAAGAAGAGT
TCAATGCACTTCTTCACCAAGTTCTTACGGATAACTTTCAGGATCTTGTT
CTGTTGCAGCATCTCTCTTGAGATGTTGAGGGGAAGGTCCTCAGAATCAA
CAATACCCTTCACAAATCCAAGATACTCAGGAATTAACTCCTCACAATTG
TCCATGATGAAAACACGTCTCACATAGAGCTTGATGTTATTGGGCTTCTT
CCTTGTGTCAAACAGATCAAAAGGTGCCCTCTTAGGAGCATAGAGGATAG
CCTTGAACTCAAGTTGGCCTTCAACTGAGAAGTGCTTAACAGCCAAATGC
TCCTCCCAATCATTGGTAAGGCTCTTGTAGAAAGCAGCATATTCTTCCTT
AGAGATCTCCTCTGGCTTCCTCATCCAGATTGGTTTCTGTTTGTTCACCA
ACGACCACTCATGGGACACCTCCTTGATCTTCTTCTTCTTCTTCTCTTCT
TTTTCTTTCTCCTCGTCAACATCTTCAACCTTCCCTTCCTCATCCTTCTT
CTCTTCCTCATCCTCATCATCAGAGATCTCCTTCTCGGTAGTCTTCTCAA
TCCAGAGAGAGATTGGATAGCTAATAAACTCTGAGTGCTTCTTGATCAGG
TCCTTCAGGCGGCGTTCCTCAAGGTACTCAAGTTGGTCTTCCTTGAGGAA
GAGGGTAATTTTTGTGCCCCTACCAAGATTCTCACCGGAGGCATCTCTGG
TAACAGTAAATGATCCTCCAGCCTGGGACTCCCAAACATACTGTTCATCA
TCATTGTGCTTGGTAGTCACGATGACCTTCTCAGCAACCAGGTATGCTGA
GTAGAAACCAACACCAAACTGCCCAATCATGCTAACATCTGCTCCAGCAG
CCAAAGCCTCCATAAATTCCTTGGTACCAGACCTTGCGATGGTACCGAGA
TTGTTCACCAAATCTAACAGCCAAAAAAAATTGAGACAATTAGTGCAAGC
ATTTATTAGGCAATAATCTACAAATTACAAAATCAACACAAAATGAAACA
GACAACCAGAAGCAACACGTACCGGCCTTGGTCATGCCAATACCACTGTC
AATAATGGACAAGGAATTGTTTGTTTTGTCAGGAATAATATGGATGAAGA
GCTCAGGTTGAGCATCAAGCTTGCTCTTATCTGTCAAGCTCTCAAATCTG
ATTTTATCCAGAGCCTGAAACAAACGGGGGAACATATAAAGCCTAAAATC
AGAAAGTGGGAACAATATATTTACACATCTACTGGTGAGGGAATCAACCG
AACAACTAAGCAGATTCCAAGATTCAAAATCCACAAACAAACTTGTATTT
ACATCTACAACAAGATGGATTCAAAATAAACTTATAGAAAAACTCCATTA
AAATCCTTTAAAACAGTCGACACCCATTACAATCCACAAAACCTAGCTAA
TGAAATATCCAGTAAATGAGATTTTGGCATTTTCAGGACACCTCAATGAA
TTCATCAGCATAATTAAATAAATAAATAACCAAAACCAAAGAAACAACAT
ATTCACATATCCTGAAAGGGAAACTAATCCTCAAGAACCAAATCCCACAG
TCTATAAACACTCTAACCAAGTTTAAAAACAAAAACAAACAGACAAATCA
CTCTCATAGCCATTAGAAACTATAGCAGAAATGGAAGCATATATACGAAA
AAAATCAAGCGAGAAAGAGAGAGAGAGGAAAGCCTTACATCGGAGGCATT
GCTGATTAGCTCACGAAGAAAGATCTCCTTGTTGCTGTAAAAGGTATTGA
TGATCAAACTGAGCAACTGGTTGATCTCGGCCTGGAAAGCAAACGTCTCT
GTCTCCGCCATCGCTAATTGAATACCGTAGGCTAGAGATCAAATGCAAGA
GAATTTGAAAATTAAGAGACAAAGAGACGTAGACTCAGAGATCGAGAGGC
GACGAGAGTGAGTCC
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mRNA from alignment at Chromosome01:752759..755773-

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G003800.1.v6.1 ID=Manes.01G003800.1.v6.1|Name=Manes.01G003800.1|organism=Manihot esculenta|type=mRNA|length=3015bp|location=Sequence derived from alignment at Chromosome01:752759..755773- (Manihot esculenta)
GGACTCACTCTCGTCGCCTCTCGATCTCTGAGTCTACGTCTCTTTGTCTC TTAATTTTCAAATTCTCTTGCATTTGATCTCTAGCCTACGGTATTCAATT AGCGATGGCGGAGACAGAGACGTTTGCTTTCCAGGCCGAGATCAACCAGT TGCTCAGTTTGATCATCAATACCTTTTACAGCAACAAGGAGATCTTTCTT CGTGAGCTAATCAGCAATGCCTCCGATGTAAGGCTTTCCTCTCTCTCTCT TTCTCGCTTGATTTTTTTCGTATATATGCTTCCATTTCTGCTATAGTTTC TAATGGCTATGAGAGTGATTTGTCTGTTTGTTTTTGTTTTTAAACTTGGT TAGAGTGTTTATAGACTGTGGGATTTGGTTCTTGAGGATTAGTTTCCCTT TCAGGATATGTGAATATGTTGTTTCTTTGGTTTTGGTTATTTATTTATTT AATTATGCTGATGAATTCATTGAGGTGTCCTGAAAATGCCAAAATCTCAT TTACTGGATATTTCATTAGCTAGGTTTTGTGGATTGTAATGGGTGTCGAC TGTTTTAAAGGATTTTAATGGAGTTTTTCTATAAGTTTATTTTGAATCCA TCTTGTTGTAGATGTAAATACAAGTTTGTTTGTGGATTTTGAATCTTGGA ATCTGCTTAGTTGTTCGGTTGATTCCCTCACCAGTAGATGTGTAAATATA TTGTTCCCACTTTCTGATTTTAGGCTTTATATGTTCCCCCGTTTGTTTCA GGCTCTGGATAAAATCAGATTTGAGAGCTTGACAGATAAGAGCAAGCTTG ATGCTCAACCTGAGCTCTTCATCCATATTATTCCTGACAAAACAAACAAT TCCTTGTCCATTATTGACAGTGGTATTGGCATGACCAAGGCCGGTACGTG TTGCTTCTGGTTGTCTGTTTCATTTTGTGTTGATTTTGTAATTTGTAGAT TATTGCCTAATAAATGCTTGCACTAATTGTCTCAATTTTTTTTGGCTGTT AGATTTGGTGAACAATCTCGGTACCATCGCAAGGTCTGGTACCAAGGAAT TTATGGAGGCTTTGGCTGCTGGAGCAGATGTTAGCATGATTGGGCAGTTT GGTGTTGGTTTCTACTCAGCATACCTGGTTGCTGAGAAGGTCATCGTGAC TACCAAGCACAATGATGATGAACAGTATGTTTGGGAGTCCCAGGCTGGAG GATCATTTACTGTTACCAGAGATGCCTCCGGTGAGAATCTTGGTAGGGGC ACAAAAATTACCCTCTTCCTCAAGGAAGACCAACTTGAGTACCTTGAGGA ACGCCGCCTGAAGGACCTGATCAAGAAGCACTCAGAGTTTATTAGCTATC CAATCTCTCTCTGGATTGAGAAGACTACCGAGAAGGAGATCTCTGATGAT GAGGATGAGGAAGAGAAGAAGGATGAGGAAGGGAAGGTTGAAGATGTTGA CGAGGAGAAAGAAAAAGAAGAGAAGAAGAAGAAGAAGATCAAGGAGGTGT CCCATGAGTGGTCGTTGGTGAACAAACAGAAACCAATCTGGATGAGGAAG CCAGAGGAGATCTCTAAGGAAGAATATGCTGCTTTCTACAAGAGCCTTAC CAATGATTGGGAGGAGCATTTGGCTGTTAAGCACTTCTCAGTTGAAGGCC AACTTGAGTTCAAGGCTATCCTCTATGCTCCTAAGAGGGCACCTTTTGAT CTGTTTGACACAAGGAAGAAGCCCAATAACATCAAGCTCTATGTGAGACG TGTTTTCATCATGGACAATTGTGAGGAGTTAATTCCTGAGTATCTTGGAT TTGTGAAGGGTATTGTTGATTCTGAGGACCTTCCCCTCAACATCTCAAGA GAGATGCTGCAACAGAACAAGATCCTGAAAGTTATCCGTAAGAACTTGGT GAAGAAGTGCATTGAACTCTTCTTTGAGATTGCTGAAAACAAGGAAGATT ACAACAAATTCTACGAGGCATTCTCTAAGAACCTCAAGCTTGGTATCCAT GAGGACTCCCAAAACAAGACTAAGCTTGCTGAATTGCTTCGATACCACTC CACCAAGAGTGGCGATGAGATGACTAGCCTCAAGGATTACGTGACCAGAA TGAAGGAGGGCCAAAATGATATCTACTACATCACTGGTGAAAGCAAGAAG GCAGTTGAAAACTCCCCATTCCTTGAGAAGTTGAAGAAGAAGGGCTATGA AGTCCTTTTCATGGTTGATGCTATCGATGAGTATGCTGTTGGTCAGCTCA AGGAGTTTGAAGGCAAGAAGCTTGTTTCTGCCACAAAGGAAGGTTTGAAA ATTGATGAAAGTGAAGATGAGAAGAAAAGGAAGGAAGAACTCAAGGAGAA GTTTGAGGGTCTCTGCAAGGTAATAAAGGATGTGTTGGGAGACAGGGTAG AAAAGGTTGTTGTCTCAGACCGTGTTGTGGATTCTCCCTGCTGCTTGGTC ACGGGTGAATATGGGTGGACTGCCAACATGGAAAGAATTATGAAAGCACA AGCTTTGAGGGACAGCAGCATGGCTGGGTACATGTCAAGCAAAAAGACAA TGGAGATCAATCCAGAAAATCCCATCATGGAGGAACTAAGAAAGAGAGCT GATGCTGACAAGAACGACAAGTCGGTGAAGGATCTTGTGCTGCTACTATT CGAGACTGCTCTGCTCACATCTGGATTCAGCCTTGATGACCCAAATACCT TCGGTAACAGGATCCACAGGATGTTGAAGCTTGGATTGAGCATCGATGAG GATGCTGGTGAGGGAGATGCTGACATGCCGGCCTTGGAGGATGCTGATGC CGATGCTGAGGGTTCCAAGATGGAGGAAGTTGATTAAGCCCTTAGCCTAT CACTTGTGATTTTAACTTCTTACTAGTGTTGTGGTACTGTTTTAAGTATG TTAGCTATTACATCGTTCCTGAGATATTTGGATAGTGTTTTGAACTTCCT GGTTAGATGGTTCTCTATTTTTGGTTTTGATTATTTCCTTAATGCAGTAA GGTTTAGCAATTATA
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Coding sequence (CDS) from alignment at Chromosome01:752759..755773-

>Manes.01G003800.1.v6.1 ID=Manes.01G003800.1.v6.1|Name=Manes.01G003800.1|organism=Manihot esculenta|type=CDS|length=2100bp|location=Sequence derived from alignment at Chromosome01:752759..755773- (Manihot esculenta)
ATGGCGGAGACAGAGACGTTTGCTTTCCAGGCCGAGATCAACCAGTTGCT
CAGTTTGATCATCAATACCTTTTACAGCAACAAGGAGATCTTTCTTCGTG
AGCTAATCAGCAATGCCTCCGATGCTCTGGATAAAATCAGATTTGAGAGC
TTGACAGATAAGAGCAAGCTTGATGCTCAACCTGAGCTCTTCATCCATAT
TATTCCTGACAAAACAAACAATTCCTTGTCCATTATTGACAGTGGTATTG
GCATGACCAAGGCCGATTTGGTGAACAATCTCGGTACCATCGCAAGGTCT
GGTACCAAGGAATTTATGGAGGCTTTGGCTGCTGGAGCAGATGTTAGCAT
GATTGGGCAGTTTGGTGTTGGTTTCTACTCAGCATACCTGGTTGCTGAGA
AGGTCATCGTGACTACCAAGCACAATGATGATGAACAGTATGTTTGGGAG
TCCCAGGCTGGAGGATCATTTACTGTTACCAGAGATGCCTCCGGTGAGAA
TCTTGGTAGGGGCACAAAAATTACCCTCTTCCTCAAGGAAGACCAACTTG
AGTACCTTGAGGAACGCCGCCTGAAGGACCTGATCAAGAAGCACTCAGAG
TTTATTAGCTATCCAATCTCTCTCTGGATTGAGAAGACTACCGAGAAGGA
GATCTCTGATGATGAGGATGAGGAAGAGAAGAAGGATGAGGAAGGGAAGG
TTGAAGATGTTGACGAGGAGAAAGAAAAAGAAGAGAAGAAGAAGAAGAAG
ATCAAGGAGGTGTCCCATGAGTGGTCGTTGGTGAACAAACAGAAACCAAT
CTGGATGAGGAAGCCAGAGGAGATCTCTAAGGAAGAATATGCTGCTTTCT
ACAAGAGCCTTACCAATGATTGGGAGGAGCATTTGGCTGTTAAGCACTTC
TCAGTTGAAGGCCAACTTGAGTTCAAGGCTATCCTCTATGCTCCTAAGAG
GGCACCTTTTGATCTGTTTGACACAAGGAAGAAGCCCAATAACATCAAGC
TCTATGTGAGACGTGTTTTCATCATGGACAATTGTGAGGAGTTAATTCCT
GAGTATCTTGGATTTGTGAAGGGTATTGTTGATTCTGAGGACCTTCCCCT
CAACATCTCAAGAGAGATGCTGCAACAGAACAAGATCCTGAAAGTTATCC
GTAAGAACTTGGTGAAGAAGTGCATTGAACTCTTCTTTGAGATTGCTGAA
AACAAGGAAGATTACAACAAATTCTACGAGGCATTCTCTAAGAACCTCAA
GCTTGGTATCCATGAGGACTCCCAAAACAAGACTAAGCTTGCTGAATTGC
TTCGATACCACTCCACCAAGAGTGGCGATGAGATGACTAGCCTCAAGGAT
TACGTGACCAGAATGAAGGAGGGCCAAAATGATATCTACTACATCACTGG
TGAAAGCAAGAAGGCAGTTGAAAACTCCCCATTCCTTGAGAAGTTGAAGA
AGAAGGGCTATGAAGTCCTTTTCATGGTTGATGCTATCGATGAGTATGCT
GTTGGTCAGCTCAAGGAGTTTGAAGGCAAGAAGCTTGTTTCTGCCACAAA
GGAAGGTTTGAAAATTGATGAAAGTGAAGATGAGAAGAAAAGGAAGGAAG
AACTCAAGGAGAAGTTTGAGGGTCTCTGCAAGGTAATAAAGGATGTGTTG
GGAGACAGGGTAGAAAAGGTTGTTGTCTCAGACCGTGTTGTGGATTCTCC
CTGCTGCTTGGTCACGGGTGAATATGGGTGGACTGCCAACATGGAAAGAA
TTATGAAAGCACAAGCTTTGAGGGACAGCAGCATGGCTGGGTACATGTCA
AGCAAAAAGACAATGGAGATCAATCCAGAAAATCCCATCATGGAGGAACT
AAGAAAGAGAGCTGATGCTGACAAGAACGACAAGTCGGTGAAGGATCTTG
TGCTGCTACTATTCGAGACTGCTCTGCTCACATCTGGATTCAGCCTTGAT
GACCCAAATACCTTCGGTAACAGGATCCACAGGATGTTGAAGCTTGGATT
GAGCATCGATGAGGATGCTGGTGAGGGAGATGCTGACATGCCGGCCTTGG
AGGATGCTGATGCCGATGCTGAGGGTTCCAAGATGGAGGAAGTTGATTAA
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