Manes.01G003600.1.v6.1 (mRNA)

Overview
NameManes.01G003600.1
Unique NameManes.01G003600.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length867
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:716745..717611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32358111
Longest1
AncestorIdentifiercassava4.1_026096m.v4.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G003600Manes.01G003600.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G003600.1Manes.01G003600.1.v6.1-proteinManihot esculentapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G003600.1.v6.1.CDS.1Manes.01G003600.1.v6.1.CDS.1Manihot esculentaCDS
Manes.01G003600.1.v6.1.CDS.2Manes.01G003600.1.v6.1.CDS.2Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G003600.1.v6.1.three_prime_UTR.1Manes.01G003600.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G003600.1.v6.1 ID=Manes.01G003600.1.v6.1|Name=Manes.01G003600.1|organism=Manihot esculenta|type=mRNA|length=867bp
ATGAGAAAGAAAGGCGAAGAAACGACGTCGCATGAACGTGTTTTTAATCA
AATTCCGCCTCGCAAAACGAAAATCTCTATCGCATTGGCAGTCATCGCCA
ACACGTAAATTACTCTTTTAGGCTTATTTTTGCAATTTTCATTTTAAATC
AAAAACTAAAAATACCTCAAAAGTTCTCTCTCTCTCTCTCTCTCACTCTG
TCTCTGCAGGACCTTCCATCTCTATTGTTTTTGTTGTCGCTCTCTCGAGG
TGAGAGCTGTTCGTAGTTGGAATCTTTCTGTTCGTTTCCCGAGAAAGCTG
AAAGCTTATAGAGAAGGGAAAACGAGAAAAGGCAAGAAAATTTTGGAATC
TCAAACACATCATCATCGCCTCTTTTTTAATTCCAAATTTTTCCTGCTCT
TCTCTGGCATCTGAACGGATCGTTTTGTTCGCTCTTTTATTCTTTTTAAG
TTTTCAAATGTTCATAAGGTTGATTTCTTTGATGTTGATAGATCTATGGC
GCTGAGATATTTGAGTTTAATGATAGATATATATACATATGTATATTTGA
TGTGATCTTGTACCAGGTTCTAATTATTGGTTTCTTTTTATGCTTTGGTG
TTTGACGTTCTTGCGTATAATATTCTTGATCTGATTTTGAAATTGTATAG
ATGCATATGAGTTTTAGTCGTTGCTCTATCTATTGGGATTTTGAATTTGT
TCAATAAAGTTTTGAGGTTGGACTGGCTATTTTTTATGTGTGGGCATGGA
GTGCTTCTTAGACAGAAATCAAGATTAGTATTGTGATTATAAACATTTAT
ATAGAGAACCGTCGGAACTAACATGTAGCCTAGTCAAGAAACATTTAGGG
TTACAAGCTCTCTCTGA
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mRNA from alignment at Chromosome01:716745..717611+

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G003600.1.v6.1 ID=Manes.01G003600.1.v6.1|Name=Manes.01G003600.1|organism=Manihot esculenta|type=mRNA|length=867bp|location=Sequence derived from alignment at Chromosome01:716745..717611+ (Manihot esculenta)
ATGAGAAAGAAAGGCGAAGAAACGACGTCGCATGAACGTGTTTTTAATCA AATTCCGCCTCGCAAAACGAAAATCTCTATCGCATTGGCAGTCATCGCCA ACACGTAAATTACTCTTTTAGGCTTATTTTTGCAATTTTCATTTTAAATC AAAAACTAAAAATACCTCAAAAGTTCTCTCTCTCTCTCTCTCTCACTCTG TCTCTGCAGGACCTTCCATCTCTATTGTTTTTGTTGTCGCTCTCTCGAGG TGAGAGCTGTTCGTAGTTGGAATCTTTCTGTTCGTTTCCCGAGAAAGCTG AAAGCTTATAGAGAAGGGAAAACGAGAAAAGGCAAGAAAATTTTGGAATC TCAAACACATCATCATCGCCTCTTTTTTAATTCCAAATTTTTCCTGCTCT TCTCTGGCATCTGAACGGATCGTTTTGTTCGCTCTTTTATTCTTTTTAAG TTTTCAAATGTTCATAAGGTTGATTTCTTTGATGTTGATAGATCTATGGC GCTGAGATATTTGAGTTTAATGATAGATATATATACATATGTATATTTGA TGTGATCTTGTACCAGGTTCTAATTATTGGTTTCTTTTTATGCTTTGGTG TTTGACGTTCTTGCGTATAATATTCTTGATCTGATTTTGAAATTGTATAG ATGCATATGAGTTTTAGTCGTTGCTCTATCTATTGGGATTTTGAATTTGT TCAATAAAGTTTTGAGGTTGGACTGGCTATTTTTTATGTGTGGGCATGGA GTGCTTCTTAGACAGAAATCAAGATTAGTATTGTGATTATAAACATTTAT ATAGAGAACCGTCGGAACTAACATGTAGCCTAGTCAAGAAACATTTAGGG TTACAAGCTCTCTCTGA
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Coding sequence (CDS) from alignment at Chromosome01:716745..717611+

>Manes.01G003600.1.v6.1 ID=Manes.01G003600.1.v6.1|Name=Manes.01G003600.1|organism=Manihot esculenta|type=CDS|length=309bp|location=Sequence derived from alignment at Chromosome01:716745..717611+ (Manihot esculenta)
ATGAGAAAGAAAGGCGAAGAAACGACGTCGCATGAACGTGTTTTTAATCA
AATTCCGCCTCGCAAAACGAAAATCTCTATCGCATTGGCAGTCATCGCCA
ACACGACCTTCCATCTCTATTGTTTTTGTTGTCGCTCTCTCGAGGTGAGA
GCTGTTCGTAGTTGGAATCTTTCTGTTCGTTTCCCGAGAAAGCTGAAAGC
TTATAGAGAAGGGAAAACGAGAAAAGGCAAGAAAATTTTGGAATCTCAAA
CACATCATCATCGCCTCTTTTTTAATTCCAAATTTTTCCTGCTCTTCTCT
GGCATCTGA
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