Manes.01G003200.1.v6.1 (mRNA)

Overview
NameManes.01G003200.1
Unique NameManes.01G003200.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length3438
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:649183..652620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32359456
Longest1
AncestorIdentifiercassava4.1_006586m.v4.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G003200Manes.01G003200.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G003200.1Manes.01G003200.1.v6.1-proteinManihot esculentapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G003200.1.v6.1.five_prime_UTR.1Manes.01G003200.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G003200.1.v6.1.CDS.1Manes.01G003200.1.v6.1.CDS.1Manihot esculentaCDS
Manes.01G003200.1.v6.1.CDS.2Manes.01G003200.1.v6.1.CDS.2Manihot esculentaCDS
Manes.01G003200.1.v6.1.CDS.3Manes.01G003200.1.v6.1.CDS.3Manihot esculentaCDS
Manes.01G003200.1.v6.1.CDS.4Manes.01G003200.1.v6.1.CDS.4Manihot esculentaCDS
Manes.01G003200.1.v6.1.CDS.5Manes.01G003200.1.v6.1.CDS.5Manihot esculentaCDS
Manes.01G003200.1.v6.1.CDS.6Manes.01G003200.1.v6.1.CDS.6Manihot esculentaCDS
Manes.01G003200.1.v6.1.CDS.7Manes.01G003200.1.v6.1.CDS.7Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G003200.1.v6.1.three_prime_UTR.1Manes.01G003200.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G003200.1.v6.1 ID=Manes.01G003200.1.v6.1|Name=Manes.01G003200.1|organism=Manihot esculenta|type=mRNA|length=3438bp
ACAATACACGTCTCTCTCAGGCTATAAGTTGCAAGGACATAATCTTATCA
CATATCGTCTCAATTGCGACCTTTGTAAGAGAGAAACCAGAAATGGCTGC
AGAAGTTGTGAGCTCAAGTAATGGTCATGTATGCTGCAACAAGGGACCTG
GTTATGCCTCCCCACTTGAGGCTATGGCTGGTCCTAGGGAGTCTCTGATC
TATGTCACTTGTATCTACACTGGTAAGTCATCATTCGTTTGAATTTCAGT
CCATGATGATAAATGATTATGCTGTGGGTTCAATCTCTTCATAGATTTTG
GGTTTTTCTTTGAAATTCATTCTATCTGCTGAATCGGGGCAACGAAAACT
TAAATTTATTTCAATATCTATACAGGAACGGGAAGAGGAAAGCCTGATTA
TCTAGCTACAGTGGACGTCGATCCAAACTCACCCACTTATTCAAAAGTGA
TCAGTAGGCTACCTGTGCCATATCTAGGAGATGAACTGCATCATTCAGGG
TGGAATGCTTGTAGTTCTTGCCATGGAGAACCATCTGCAGATAGGCGTTA
CCTAATCCTGCCTTCATTGGTGTAAGAGAATGCAAATTTCCAGTTTTTCA
TTTTCTTTGTGTATAAGAATCAGTAGATTAACTAAAGGAAATACAAAAGG
ATGCAAGGTGTCAAAACTGTGAAGAGTAGCGGGTAATAAAGAAGAGATGA
ATAAGGCTTCACTTTTATTGAAGTTCAATGGGGAGAGATAGATCAGCCAG
CAGTTGTACTGTGCACTGATGTTTTGGAAGCTTTAAAATTCTTGGGTGCC
TTGATAATTTATTAAATATAACTATGCAACTCAAAAAACTAATGACTAGT
ATCCTCTTAAAATCGTGGTTTGAGATTCAGTAGTGGGTGTTTTGAATTCA
TAATCCTCTCAGATAAGTCTAGTGAGTATATGCTTAAAGAGAGCCAAAAC
ATGACCTGAACACTGCACAAGCACAAGAAGGAAAAAGCCAGTTATAAATT
TCTCTTCAATATATTGGCGGGCTTGCTGTTTAGGAGTTAGGGCACTACAT
TAGTCAGCTCATTTCTTTGTGTAGTTGTGTTATCTTGAAATACTATAATT
CTTTCAGATCTGGTAACGTTTATGTGGTTGACACTCAAAAAGATCCAAAG
GCTCCATCGTTGCACAAAGTTGTTGAGGCAGCAGACATTTTAGAGAAGAC
AGGATTAGCCTACCCACACACTTCCCATTGCCTTGCTTCTGGAGATATAA
TGATCTCCTGCCTAGGAGATAAAGATGGACATGCAAAGGGAAGTGGGTTT
CTTCTTCTCGACTCAGAATTCAATGTGAAAGGAAGGTATATTTTTGTTAA
CATCCTCTTAAAATGTTAGCATGGTTTCTTGTAACTCTTTGGATTGTCAT
TAATCATCTGTTTGTTTTGGGCTCTTGCTTGATTCTACAATTATGTTATT
GTCCAATGGTTCAATAGTATTCAAACAAGTAGTATGACCAATTCAATTGT
GAGAGATGCAAATGGAATTGTTAAATTTTTACTTGCCAATGTGATTCTTA
GAGCCTTTTGGATATCATCATGTTCTTTAGGTGGGAGAAACCAGGGCATA
GTCCTCTGTTTGGTTATGATTTCTGGTACCAACCCCGACACAACACAATG
ATCAGCTCGTCATGGGGAGCTCCTGCAGCCTTCACTAAAGGGTTTAATCT
TCAGCATGTGTCAGATGGTCTTTATGGGAGGCATTTGCATGTCTATAGCT
GGCCAAATGGTGAACTGAAACAAACATTGGATCTTGGTGACACAGGGCTC
TTACCCTTGGAGGTGAGTGCTAAAAATACATATTTACAGTCATGCTTCAT
GCAGCTTATATATGGTCAATATTTCTTTGTGTGTGGAACAATGAACATGC
ACATAGTTATGTATGTCTTTTCTGCATTGCAGAAAACAATTGAGGCTCTA
ACTCTCTGATTTGTGTTTTGATTGCTCGCAGACAAGGTTCCTGCATGATC
CTTCTAAAGATACAGGGTTTGTTGGGTGTGCTTTGACCAGTAACATGGTG
CGATTTTTCAAGACCCCAGATGGATCTTGGAGCCATGAGGTATGCATGTG
GCAAATGCTGTCTATGCTGTTAACACGTGCAACATTTCAAATGGTTGTTT
AAGTTCATTCTGTTTTGCAGCTGGCTATATCAGTGAAACCCTTGAAGGTG
AGAAACTGGATTCTTCCAGAAATGCCAGGCCTCATAACTGATTTTCTGAT
TTCTCTTGATGATCGGTTTCTGTATTTTGTCAATTGGCTTCACGGAGATG
TCAGACAGTATAACATTGAGGATGTCAAAAATCCAGTCTTGACAGGCCAC
GTTTGGGTTGGTGGCTTGATCCAGAAAGGAAGCCCTATAGTTGTTGAGAA
AGAAGATGGTGACACTTGGCAGGCTGATGTTCCTGAGATCCAGGTTTGTA
ATGATGTCCACTGTTGCATCCTTGCCATTAATGTGACCTAATACTCACTG
AGTATGTGAAGTTAATGATTGCTGATGATTGGAACTCTTAGGGCCACTAT
GTTGTGATCCTTGAATGTAGTTTTTGTGGTCAAATAGTTCTATCATTCAG
CACAGAAACTTCCGTACCAACACATTTTGATGTACTTTGGCAGATTAATC
ATCTCGCCAGGATAGAAAAAGTTAGGTAGGAAGATGAAACATTTTCATCA
AGCGTCATACCTCCTAGGTGGCTGGGAAGCAAAAATAATTGTGTTCAACT
GTTTACCAGTGCATGATGGTGGCTTGCATTAACCAGGATAATTTTTATTT
ATAGAAATCATCATGACACAGAGCATACTCTGATCAATATCTGCCCAAGG
ACCTCTATATTTGATAGAGATTGGTGACTTTCATATTTTCTGTTCAGGGT
AAAAGATTGAGAGGAGGACCTCAGATGATCCAGCTAAGTTTAGATGGAAA
GAGGCTCTATGTCACCAACTCACTCTTTAGCACTTGGGATCGTCAGTTTT
ATCCTGAAATCTTGGAGAAAGGATCCCACATGTTGCAGATCGATGTTGAC
AGTGAGCAAGGTGGTCTCAAAGTAAACCCAAACTTTTTCGTGGACTTTGC
AGCTGAACCTGATGGTCCTTCCCTTGCCCATGAGATGAGATATCCAGGTG
GTGACTGCACTTCAGATATATGGATATAGGTATCCACCTGAACTATTGTG
GTGGCAAGGGGTTGCCTGAGAACATAGTTTACGAATATGCATGCAATAAT
CCATTCAGTCCGTATATGTGGATGAATCTTGAATGGACATCTTCAGACTA
AATATCAAATAAGAAAAGTTTCTTAATTCTCCTGTAATTGTCATCAACTT
AGAACTAATTGAAGCCTGCAATTTCAGTTTCAGGAAATGAATATGTACAT
TTAGAAAGAGGCATTTTGTTTTGAAATAGATGACAGTA
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mRNA from alignment at Chromosome01:649183..652620+

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G003200.1.v6.1 ID=Manes.01G003200.1.v6.1|Name=Manes.01G003200.1|organism=Manihot esculenta|type=mRNA|length=3438bp|location=Sequence derived from alignment at Chromosome01:649183..652620+ (Manihot esculenta)
ACAATACACGTCTCTCTCAGGCTATAAGTTGCAAGGACATAATCTTATCA CATATCGTCTCAATTGCGACCTTTGTAAGAGAGAAACCAGAAATGGCTGC AGAAGTTGTGAGCTCAAGTAATGGTCATGTATGCTGCAACAAGGGACCTG GTTATGCCTCCCCACTTGAGGCTATGGCTGGTCCTAGGGAGTCTCTGATC TATGTCACTTGTATCTACACTGGTAAGTCATCATTCGTTTGAATTTCAGT CCATGATGATAAATGATTATGCTGTGGGTTCAATCTCTTCATAGATTTTG GGTTTTTCTTTGAAATTCATTCTATCTGCTGAATCGGGGCAACGAAAACT TAAATTTATTTCAATATCTATACAGGAACGGGAAGAGGAAAGCCTGATTA TCTAGCTACAGTGGACGTCGATCCAAACTCACCCACTTATTCAAAAGTGA TCAGTAGGCTACCTGTGCCATATCTAGGAGATGAACTGCATCATTCAGGG TGGAATGCTTGTAGTTCTTGCCATGGAGAACCATCTGCAGATAGGCGTTA CCTAATCCTGCCTTCATTGGTGTAAGAGAATGCAAATTTCCAGTTTTTCA TTTTCTTTGTGTATAAGAATCAGTAGATTAACTAAAGGAAATACAAAAGG ATGCAAGGTGTCAAAACTGTGAAGAGTAGCGGGTAATAAAGAAGAGATGA ATAAGGCTTCACTTTTATTGAAGTTCAATGGGGAGAGATAGATCAGCCAG CAGTTGTACTGTGCACTGATGTTTTGGAAGCTTTAAAATTCTTGGGTGCC TTGATAATTTATTAAATATAACTATGCAACTCAAAAAACTAATGACTAGT ATCCTCTTAAAATCGTGGTTTGAGATTCAGTAGTGGGTGTTTTGAATTCA TAATCCTCTCAGATAAGTCTAGTGAGTATATGCTTAAAGAGAGCCAAAAC ATGACCTGAACACTGCACAAGCACAAGAAGGAAAAAGCCAGTTATAAATT TCTCTTCAATATATTGGCGGGCTTGCTGTTTAGGAGTTAGGGCACTACAT TAGTCAGCTCATTTCTTTGTGTAGTTGTGTTATCTTGAAATACTATAATT CTTTCAGATCTGGTAACGTTTATGTGGTTGACACTCAAAAAGATCCAAAG GCTCCATCGTTGCACAAAGTTGTTGAGGCAGCAGACATTTTAGAGAAGAC AGGATTAGCCTACCCACACACTTCCCATTGCCTTGCTTCTGGAGATATAA TGATCTCCTGCCTAGGAGATAAAGATGGACATGCAAAGGGAAGTGGGTTT CTTCTTCTCGACTCAGAATTCAATGTGAAAGGAAGGTATATTTTTGTTAA CATCCTCTTAAAATGTTAGCATGGTTTCTTGTAACTCTTTGGATTGTCAT TAATCATCTGTTTGTTTTGGGCTCTTGCTTGATTCTACAATTATGTTATT GTCCAATGGTTCAATAGTATTCAAACAAGTAGTATGACCAATTCAATTGT GAGAGATGCAAATGGAATTGTTAAATTTTTACTTGCCAATGTGATTCTTA GAGCCTTTTGGATATCATCATGTTCTTTAGGTGGGAGAAACCAGGGCATA GTCCTCTGTTTGGTTATGATTTCTGGTACCAACCCCGACACAACACAATG ATCAGCTCGTCATGGGGAGCTCCTGCAGCCTTCACTAAAGGGTTTAATCT TCAGCATGTGTCAGATGGTCTTTATGGGAGGCATTTGCATGTCTATAGCT GGCCAAATGGTGAACTGAAACAAACATTGGATCTTGGTGACACAGGGCTC TTACCCTTGGAGGTGAGTGCTAAAAATACATATTTACAGTCATGCTTCAT GCAGCTTATATATGGTCAATATTTCTTTGTGTGTGGAACAATGAACATGC ACATAGTTATGTATGTCTTTTCTGCATTGCAGAAAACAATTGAGGCTCTA ACTCTCTGATTTGTGTTTTGATTGCTCGCAGACAAGGTTCCTGCATGATC CTTCTAAAGATACAGGGTTTGTTGGGTGTGCTTTGACCAGTAACATGGTG CGATTTTTCAAGACCCCAGATGGATCTTGGAGCCATGAGGTATGCATGTG GCAAATGCTGTCTATGCTGTTAACACGTGCAACATTTCAAATGGTTGTTT AAGTTCATTCTGTTTTGCAGCTGGCTATATCAGTGAAACCCTTGAAGGTG AGAAACTGGATTCTTCCAGAAATGCCAGGCCTCATAACTGATTTTCTGAT TTCTCTTGATGATCGGTTTCTGTATTTTGTCAATTGGCTTCACGGAGATG TCAGACAGTATAACATTGAGGATGTCAAAAATCCAGTCTTGACAGGCCAC GTTTGGGTTGGTGGCTTGATCCAGAAAGGAAGCCCTATAGTTGTTGAGAA AGAAGATGGTGACACTTGGCAGGCTGATGTTCCTGAGATCCAGGTTTGTA ATGATGTCCACTGTTGCATCCTTGCCATTAATGTGACCTAATACTCACTG AGTATGTGAAGTTAATGATTGCTGATGATTGGAACTCTTAGGGCCACTAT GTTGTGATCCTTGAATGTAGTTTTTGTGGTCAAATAGTTCTATCATTCAG CACAGAAACTTCCGTACCAACACATTTTGATGTACTTTGGCAGATTAATC ATCTCGCCAGGATAGAAAAAGTTAGGTAGGAAGATGAAACATTTTCATCA AGCGTCATACCTCCTAGGTGGCTGGGAAGCAAAAATAATTGTGTTCAACT GTTTACCAGTGCATGATGGTGGCTTGCATTAACCAGGATAATTTTTATTT ATAGAAATCATCATGACACAGAGCATACTCTGATCAATATCTGCCCAAGG ACCTCTATATTTGATAGAGATTGGTGACTTTCATATTTTCTGTTCAGGGT AAAAGATTGAGAGGAGGACCTCAGATGATCCAGCTAAGTTTAGATGGAAA GAGGCTCTATGTCACCAACTCACTCTTTAGCACTTGGGATCGTCAGTTTT ATCCTGAAATCTTGGAGAAAGGATCCCACATGTTGCAGATCGATGTTGAC AGTGAGCAAGGTGGTCTCAAAGTAAACCCAAACTTTTTCGTGGACTTTGC AGCTGAACCTGATGGTCCTTCCCTTGCCCATGAGATGAGATATCCAGGTG GTGACTGCACTTCAGATATATGGATATAGGTATCCACCTGAACTATTGTG GTGGCAAGGGGTTGCCTGAGAACATAGTTTACGAATATGCATGCAATAAT CCATTCAGTCCGTATATGTGGATGAATCTTGAATGGACATCTTCAGACTA AATATCAAATAAGAAAAGTTTCTTAATTCTCCTGTAATTGTCATCAACTT AGAACTAATTGAAGCCTGCAATTTCAGTTTCAGGAAATGAATATGTACAT TTAGAAAGAGGCATTTTGTTTTGAAATAGATGACAGTA
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Coding sequence (CDS) from alignment at Chromosome01:649183..652620+

>Manes.01G003200.1.v6.1 ID=Manes.01G003200.1.v6.1|Name=Manes.01G003200.1|organism=Manihot esculenta|type=CDS|length=1449bp|location=Sequence derived from alignment at Chromosome01:649183..652620+ (Manihot esculenta)
ATGGCTGCAGAAGTTGTGAGCTCAAGTAATGGTCATGTATGCTGCAACAA
GGGACCTGGTTATGCCTCCCCACTTGAGGCTATGGCTGGTCCTAGGGAGT
CTCTGATCTATGTCACTTGTATCTACACTGGAACGGGAAGAGGAAAGCCT
GATTATCTAGCTACAGTGGACGTCGATCCAAACTCACCCACTTATTCAAA
AGTGATCAGTAGGCTACCTGTGCCATATCTAGGAGATGAACTGCATCATT
CAGGGTGGAATGCTTGTAGTTCTTGCCATGGAGAACCATCTGCAGATAGG
CGTTACCTAATCCTGCCTTCATTGGTATCTGGTAACGTTTATGTGGTTGA
CACTCAAAAAGATCCAAAGGCTCCATCGTTGCACAAAGTTGTTGAGGCAG
CAGACATTTTAGAGAAGACAGGATTAGCCTACCCACACACTTCCCATTGC
CTTGCTTCTGGAGATATAATGATCTCCTGCCTAGGAGATAAAGATGGACA
TGCAAAGGGAAGTGGGTTTCTTCTTCTCGACTCAGAATTCAATGTGAAAG
GAAGGTGGGAGAAACCAGGGCATAGTCCTCTGTTTGGTTATGATTTCTGG
TACCAACCCCGACACAACACAATGATCAGCTCGTCATGGGGAGCTCCTGC
AGCCTTCACTAAAGGGTTTAATCTTCAGCATGTGTCAGATGGTCTTTATG
GGAGGCATTTGCATGTCTATAGCTGGCCAAATGGTGAACTGAAACAAACA
TTGGATCTTGGTGACACAGGGCTCTTACCCTTGGAGACAAGGTTCCTGCA
TGATCCTTCTAAAGATACAGGGTTTGTTGGGTGTGCTTTGACCAGTAACA
TGGTGCGATTTTTCAAGACCCCAGATGGATCTTGGAGCCATGAGCTGGCT
ATATCAGTGAAACCCTTGAAGGTGAGAAACTGGATTCTTCCAGAAATGCC
AGGCCTCATAACTGATTTTCTGATTTCTCTTGATGATCGGTTTCTGTATT
TTGTCAATTGGCTTCACGGAGATGTCAGACAGTATAACATTGAGGATGTC
AAAAATCCAGTCTTGACAGGCCACGTTTGGGTTGGTGGCTTGATCCAGAA
AGGAAGCCCTATAGTTGTTGAGAAAGAAGATGGTGACACTTGGCAGGCTG
ATGTTCCTGAGATCCAGGGTAAAAGATTGAGAGGAGGACCTCAGATGATC
CAGCTAAGTTTAGATGGAAAGAGGCTCTATGTCACCAACTCACTCTTTAG
CACTTGGGATCGTCAGTTTTATCCTGAAATCTTGGAGAAAGGATCCCACA
TGTTGCAGATCGATGTTGACAGTGAGCAAGGTGGTCTCAAAGTAAACCCA
AACTTTTTCGTGGACTTTGCAGCTGAACCTGATGGTCCTTCCCTTGCCCA
TGAGATGAGATATCCAGGTGGTGACTGCACTTCAGATATATGGATATAG
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