Manes.01G002600.1.v6.1 (mRNA)

Overview
NameManes.01G002600.1
Unique NameManes.01G002600.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length3328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:563143..566470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32359792
Longest1
AncestorIdentifiercassava4.1_031720m.v4.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G002600Manes.01G002600.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G002600.1Manes.01G002600.1.v6.1-proteinManihot esculentapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G002600.1.v6.1.CDS.3Manes.01G002600.1.v6.1.CDS.3Manihot esculentaCDS
Manes.01G002600.1.v6.1.CDS.2Manes.01G002600.1.v6.1.CDS.2Manihot esculentaCDS
Manes.01G002600.1.v6.1.CDS.1Manes.01G002600.1.v6.1.CDS.1Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G002600.1.v6.1.three_prime_UTR.1Manes.01G002600.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G002600.1.v6.1.five_prime_UTR.1Manes.01G002600.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G002600.1.v6.1 ID=Manes.01G002600.1.v6.1|Name=Manes.01G002600.1|organism=Manihot esculenta|type=mRNA|length=3328bp
TTCAATATCAAGCAATTTTATTTTATTTTATTATGAACTTACACGTGATT
TTCTGAATAATCAAGTATTTTATACCCAATAATAATGATTGCCTTGAACA
AGTAGAAGAAAACATACTAATCCACTTTGATAGGATATATGCATATGGTG
ACTTAAAGGTTATAGCCAGGACTTGCATGTAAAAGAGTAGAGTCTTAATG
ACCTGATCTACTCCAAATCTTCTCTAGTTCTCGAACGAAGGCCTTTTGCC
TGCCAACAACAATAGTAATATGATCTTTTTTCTCTATCACCTTGACACGA
GCACGAGGAACTCTTCGTTTTATGTTGTAACTACATTCAACTGGAATAAG
CTCATCATTTCTCCCATGGAAGATATTGACATCACATTTTAGATTATCCC
GGACTTTATCCAAATAGCCGTCGAGCTTACCGGCGGTTCCACAGATAATA
TTGTGTAGGGTATGCCATGCTGCATTGTGGGTATGGCTAAAGAATCCTTC
GAGCAAGAATGTCCTGATCCTGTGAACATATTTTGGGAAAATTTGCATTA
ATATCAAAGCGAATTATTTTATGTATTTAGCTTACCATCTCATCAGCAGA
AGACAAAAATAAAAAAATAGAAAAACTTAATAAATTTAAAATTAATTTTA
ATTTTCATCTAATTAATTTAAAATTGAAGGACTAATTAATAAATTTTTCT
AAACCATAGAGACTAAATACTAATTATATATATACACACGCACCGAAACA
TTGTGTTTTTCATAAAAAAAAATGTTAGATATAAATATTTTTTTAAACGA
TTAATTGTCTAATACGCATTAAAAACTATTTCTTATATTAGTTATTATTT
TCTTTATTTTAATTAATAACTAATAATAATATATTTCAATAAATAAATTA
GCATTCCTCGTTCGCTAAACGGTGAAATGTTTTCAAACTACAAGCAATGT
AAAATTTTCACTATTTGAAATTGTATGGGTGGCCTACCCAATCATCTAAG
TACGTTCAACAATAAGATTAAGACATTTGGATGGTCCAAATCTTTTAGAA
ATGCCCATTCATTTATTTATGGGAAAGAAAGAGTCCACTTTGCAAATAAA
CTTCTATTCATAGAAACGTCAAACCATAACCATCACAGCTGTACTTTGGT
GAACCATAAAGTTCTAGCCTCACACTCATTAATGGATCAACCACTTGTCT
CCAAAATGAATATCCAGAAAATGATTTTTTTTATAAAGGTTTTGTTAATT
GAAGTTTAGATGGTAACGTGAGATTCAACACCCTTACGTTTAAAATTTTA
TTGGTATATTATATATTTATAGAAGGCCCAATATCGAATAAAAGACTCTA
ATATCATATTAAATTTGAAACAGACTTAACTCACTCTAAAAATTAGGTTA
AAGGAAGAAGTACCTATAATCCATATAAAAGATATATTATGCCTTTTCAC
AATCGATGTAGAATTAAAAAAATAAAATATTTAATTTATATAATTTTAAA
TCTAATAAAAACAAGCATACCTGAAATTTTAAAATTTCCTTTAAAAGGTA
TTAAAATTATAGTTGGTTTGGGTTGTTTAGAAAACGGACACAAGACATTG
ATTGCGTATACAGGCAGAGAGATGTTAAGGTTTTGATTGAAAATATTATT
CTTAAGATTTGAGGAGTTTACCTGTTTCTTGTGATGAGTTTAGCAAGAAA
TTCCCACAGCCTATGGTTCTTGCATATAAGAAGACAAATCGTCCGGCTTA
TATGCTCATACCAACAGGCAATCGACGCGCCAAATGCAATGAGTGGCCAT
ACGCGCCTTGGAGCTACCATTCTCATAACATACTGTGTTGCTTGTAACCC
TCTTGGCACCGGATAATATGGCTGTCAAGGCATTGATGGGTAATTAACGA
TTTCAAATATATAAATTAGTAATTAAATAATTATTATGAATATTATTATT
CAAAAACAATGAGATGAAAAGAAAAGAAAGATGACAGGAGATTTTTTTTT
TNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTATAATTAGAGAT
ATTGCATTCTTATTCCAATGAATTTGGGACACCGAATGATATTAACTTAC
TGGTGCAAGGAGAGTGAGTGATTTGACGGATGCAGGGTATTTTACTGCAA
GAGCTAGGGCCAAAATGCAACCCAGAGAATGAGCAACAATGTGGAAGGAT
TTAACTTTGTAAGGTTCGATCACAGATCTTTCAATCATTTCCAAATGCTC
TCTAAGTGTGTATAGAGAGTCTGTTGGCTTTGGGCTTCTCCCAAATCCTA
GCAAATCCACGGCAAAGAATCGGTATTTGGCTTTAGCAGCATCCGAGAAG
TTAGGAAATGCAGTTTCTGTCCAAAATGCTGAAGATGAAATGAATCCATG
GATGAAGAGAACATCTACTTTTGCCTGATTATTATTACCACCTTCGTCTG
CGCCTTCAGCTTTAACAAATAGATTATCTTTGCTAGAGGTGATCCATCTA
GTGCAATGTTGACAATCACAGTCGGACCATCTGGGGATGGGATGCGTTTG
CTGCCCTTCAATCTTTCCTTGAAGCATTTCAACAATGGTGGAGTTAATCG
TGAAAGAGGATCTCGGGGTTCCTTTCTTCACCTTCTTCCAGGATTGTACA
ATGCTCCTTTCCAACTTGATTCGTTTTAATACATTAACAGTCAACTTTGA
AACTTCAGAAAGTAGGGAAGGGCGAGTATAAAGAGTGTCTGAGATCTCTT
GTAGCTCTAACTTGCTAGAGCTGAGGCAAACAATCTTGGACTCACCTTGT
TCAGAAACCAAGATCTTGCCACTGCTAGTGATGGCTTCTTTAGCTGAGGT
GCAATAACAGGGTTTCCAATCTGCTTCAATGAAGAAATCTGCTACTTTGT
ATGCGAAACATAGAACAGAATCAAGAAGATCAAGAAAACAAAAAACGACG
AAGCTCACAGCCTCATGCACAGCTCTACATGTTAAGGTTAAAACCATTCT
GGTTTTGCCCATTACTCCCATTCTCACAAGTGCCCACGTAAACTATCGTT
TATTAGAGTCCAAAGTAACGAGAGAGGATAGAAATAAGGAGAATGAGAGA
GAGAGAGGGAAGGGAAGAAACTTATAAAGGCAGGCAGCAGAGTCAAACGA
GTTGAGGACAAGCCATTGAAAGCAGTGCAGTATATGAAAAATTCTATACT
AAGTCGAAACTAAAGGATCGGGGTCGTGATTCTTGATTTCCATGCCAAAA
TGGTCCTGGAAATTAATACTACACTAAATTTCTTGACCATTACCATATGC
GCCTCACAAATTGATGAAGCGTGTGGGA
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mRNA from alignment at Chromosome01:563143..566470-

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G002600.1.v6.1 ID=Manes.01G002600.1.v6.1|Name=Manes.01G002600.1|organism=Manihot esculenta|type=mRNA|length=3328bp|location=Sequence derived from alignment at Chromosome01:563143..566470- (Manihot esculenta)
TCCCACACGCTTCATCAATTTGTGAGGCGCATATGGTAATGGTCAAGAAA TTTAGTGTAGTATTAATTTCCAGGACCATTTTGGCATGGAAATCAAGAAT CACGACCCCGATCCTTTAGTTTCGACTTAGTATAGAATTTTTCATATACT GCACTGCTTTCAATGGCTTGTCCTCAACTCGTTTGACTCTGCTGCCTGCC TTTATAAGTTTCTTCCCTTCCCTCTCTCTCTCTCATTCTCCTTATTTCTA TCCTCTCTCGTTACTTTGGACTCTAATAAACGATAGTTTACGTGGGCACT TGTGAGAATGGGAGTAATGGGCAAAACCAGAATGGTTTTAACCTTAACAT GTAGAGCTGTGCATGAGGCTGTGAGCTTCGTCGTTTTTTGTTTTCTTGAT CTTCTTGATTCTGTTCTATGTTTCGCATACAAAGTAGCAGATTTCTTCAT TGAAGCAGATTGGAAACCCTGTTATTGCACCTCAGCTAAAGAAGCCATCA CTAGCAGTGGCAAGATCTTGGTTTCTGAACAAGGTGAGTCCAAGATTGTT TGCCTCAGCTCTAGCAAGTTAGAGCTACAAGAGATCTCAGACACTCTTTA TACTCGCCCTTCCCTACTTTCTGAAGTTTCAAAGTTGACTGTTAATGTAT TAAAACGAATCAAGTTGGAAAGGAGCATTGTACAATCCTGGAAGAAGGTG AAGAAAGGAACCCCGAGATCCTCTTTCACGATTAACTCCACCATTGTTGA AATGCTTCAAGGAAAGATTGAAGGGCAGCAAACGCATCCCATCCCCAGAT GGTCCGACTGTGATTGTCAACATTGCACTAGATGGATCACCTCTAGCAAA GATAATCTATTTGTTAAAGCTGAAGGCGCAGACGAAGGTGGTAATAATAA TCAGGCAAAAGTAGATGTTCTCTTCATCCATGGATTCATTTCATCTTCAG CATTTTGGACAGAAACTGCATTTCCTAACTTCTCGGATGCTGCTAAAGCC AAATACCGATTCTTTGCCGTGGATTTGCTAGGATTTGGGAGAAGCCCAAA GCCAACAGACTCTCTATACACACTTAGAGAGCATTTGGAAATGATTGAAA GATCTGTGATCGAACCTTACAAAGTTAAATCCTTCCACATTGTTGCTCAT TCTCTGGGTTGCATTTTGGCCCTAGCTCTTGCAGTAAAATACCCTGCATC CGTCAAATCACTCACTCTCCTTGCACCAGTAAGTTAATATCATTCGGTGT CCCAAATTCATTGGAATAAGAATGCAATATCTCTAATTATAAAAAAAAAA AANNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAATCTCCTGTCATCT TTCTTTTCTTTTCATCTCATTGTTTTTGAATAATAATATTCATAATAATT ATTTAATTACTAATTTATATATTTGAAATCGTTAATTACCCATCAATGCC TTGACAGCCATATTATCCGGTGCCAAGAGGGTTACAAGCAACACAGTATG TTATGAGAATGGTAGCTCCAAGGCGCGTATGGCCACTCATTGCATTTGGC GCGTCGATTGCCTGTTGGTATGAGCATATAAGCCGGACGATTTGTCTTCT TATATGCAAGAACCATAGGCTGTGGGAATTTCTTGCTAAACTCATCACAA GAAACAGGTAAACTCCTCAAATCTTAAGAATAATATTTTCAATCAAAACC TTAACATCTCTCTGCCTGTATACGCAATCAATGTCTTGTGTCCGTTTTCT AAACAACCCAAACCAACTATAATTTTAATACCTTTTAAAGGAAATTTTAA AATTTCAGGTATGCTTGTTTTTATTAGATTTAAAATTATATAAATTAAAT ATTTTATTTTTTTAATTCTACATCGATTGTGAAAAGGCATAATATATCTT TTATATGGATTATAGGTACTTCTTCCTTTAACCTAATTTTTAGAGTGAGT TAAGTCTGTTTCAAATTTAATATGATATTAGAGTCTTTTATTCGATATTG GGCCTTCTATAAATATATAATATACCAATAAAATTTTAAACGTAAGGGTG TTGAATCTCACGTTACCATCTAAACTTCAATTAACAAAACCTTTATAAAA AAAATCATTTTCTGGATATTCATTTTGGAGACAAGTGGTTGATCCATTAA TGAGTGTGAGGCTAGAACTTTATGGTTCACCAAAGTACAGCTGTGATGGT TATGGTTTGACGTTTCTATGAATAGAAGTTTATTTGCAAAGTGGACTCTT TCTTTCCCATAAATAAATGAATGGGCATTTCTAAAAGATTTGGACCATCC AAATGTCTTAATCTTATTGTTGAACGTACTTAGATGATTGGGTAGGCCAC CCATACAATTTCAAATAGTGAAAATTTTACATTGCTTGTAGTTTGAAAAC ATTTCACCGTTTAGCGAACGAGGAATGCTAATTTATTTATTGAAATATAT TATTATTAGTTATTAATTAAAATAAAGAAAATAATAACTAATATAAGAAA TAGTTTTTAATGCGTATTAGACAATTAATCGTTTAAAAAAATATTTATAT CTAACATTTTTTTTTATGAAAAACACAATGTTTCGGTGCGTGTGTATATA TATAATTAGTATTTAGTCTCTATGGTTTAGAAAAATTTATTAATTAGTCC TTCAATTTTAAATTAATTAGATGAAAATTAAAATTAATTTTAAATTTATT AAGTTTTTCTATTTTTTTATTTTTGTCTTCTGCTGATGAGATGGTAAGCT AAATACATAAAATAATTCGCTTTGATATTAATGCAAATTTTCCCAAAATA TGTTCACAGGATCAGGACATTCTTGCTCGAAGGATTCTTTAGCCATACCC ACAATGCAGCATGGCATACCCTACACAATATTATCTGTGGAACCGCCGGT AAGCTCGACGGCTATTTGGATAAAGTCCGGGATAATCTAAAATGTGATGT CAATATCTTCCATGGGAGAAATGATGAGCTTATTCCAGTTGAATGTAGTT ACAACATAAAACGAAGAGTTCCTCGTGCTCGTGTCAAGGTGATAGAGAAA AAAGATCATATTACTATTGTTGTTGGCAGGCAAAAGGCCTTCGTTCGAGA ACTAGAGAAGATTTGGAGTAGATCAGGTCATTAAGACTCTACTCTTTTAC ATGCAAGTCCTGGCTATAACCTTTAAGTCACCATATGCATATATCCTATC AAAGTGGATTAGTATGTTTTCTTCTACTTGTTCAAGGCAATCATTATTAT TGGGTATAAAATACTTGATTATTCAGAAAATCACGTGTAAGTTCATAATA AAATAAAATAAAATTGCTTGATATTGAA
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Coding sequence (CDS) from alignment at Chromosome01:563143..566470-

>Manes.01G002600.1.v6.1 ID=Manes.01G002600.1.v6.1|Name=Manes.01G002600.1|organism=Manihot esculenta|type=CDS|length=1446bp|location=Sequence derived from alignment at Chromosome01:563143..566470- (Manihot esculenta)
ATGGGAGTAATGGGCAAAACCAGAATGGTTTTAACCTTAACATGTAGAGC
TGTGCATGAGGCTGTGAGCTTCGTCGTTTTTTGTTTTCTTGATCTTCTTG
ATTCTGTTCTATGTTTCGCATACAAAGTAGCAGATTTCTTCATTGAAGCA
GATTGGAAACCCTGTTATTGCACCTCAGCTAAAGAAGCCATCACTAGCAG
TGGCAAGATCTTGGTTTCTGAACAAGGTGAGTCCAAGATTGTTTGCCTCA
GCTCTAGCAAGTTAGAGCTACAAGAGATCTCAGACACTCTTTATACTCGC
CCTTCCCTACTTTCTGAAGTTTCAAAGTTGACTGTTAATGTATTAAAACG
AATCAAGTTGGAAAGGAGCATTGTACAATCCTGGAAGAAGGTGAAGAAAG
GAACCCCGAGATCCTCTTTCACGATTAACTCCACCATTGTTGAAATGCTT
CAAGGAAAGATTGAAGGGCAGCAAACGCATCCCATCCCCAGATGGTCCGA
CTGTGATTGTCAACATTGCACTAGATGGATCACCTCTAGCAAAGATAATC
TATTTGTTAAAGCTGAAGGCGCAGACGAAGGTGGTAATAATAATCAGGCA
AAAGTAGATGTTCTCTTCATCCATGGATTCATTTCATCTTCAGCATTTTG
GACAGAAACTGCATTTCCTAACTTCTCGGATGCTGCTAAAGCCAAATACC
GATTCTTTGCCGTGGATTTGCTAGGATTTGGGAGAAGCCCAAAGCCAACA
GACTCTCTATACACACTTAGAGAGCATTTGGAAATGATTGAAAGATCTGT
GATCGAACCTTACAAAGTTAAATCCTTCCACATTGTTGCTCATTCTCTGG
GTTGCATTTTGGCCCTAGCTCTTGCAGTAAAATACCCTGCATCCGTCAAA
TCACTCACTCTCCTTGCACCACCATATTATCCGGTGCCAAGAGGGTTACA
AGCAACACAGTATGTTATGAGAATGGTAGCTCCAAGGCGCGTATGGCCAC
TCATTGCATTTGGCGCGTCGATTGCCTGTTGGTATGAGCATATAAGCCGG
ACGATTTGTCTTCTTATATGCAAGAACCATAGGCTGTGGGAATTTCTTGC
TAAACTCATCACAAGAAACAGGATCAGGACATTCTTGCTCGAAGGATTCT
TTAGCCATACCCACAATGCAGCATGGCATACCCTACACAATATTATCTGT
GGAACCGCCGGTAAGCTCGACGGCTATTTGGATAAAGTCCGGGATAATCT
AAAATGTGATGTCAATATCTTCCATGGGAGAAATGATGAGCTTATTCCAG
TTGAATGTAGTTACAACATAAAACGAAGAGTTCCTCGTGCTCGTGTCAAG
GTGATAGAGAAAAAAGATCATATTACTATTGTTGTTGGCAGGCAAAAGGC
CTTCGTTCGAGAACTAGAGAAGATTTGGAGTAGATCAGGTCATTAA
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