Manes.01G002000.1.v6.1 (mRNA)

Overview
NameManes.01G002000.1
Unique NameManes.01G002000.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length1861
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:368060..369920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32358561
Longest1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G002000Manes.01G002000.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G002000.1Manes.01G002000.1.v6.1-proteinManihot esculentapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G002000.1.v6.1.CDS.3Manes.01G002000.1.v6.1.CDS.3Manihot esculentaCDS
Manes.01G002000.1.v6.1.CDS.2Manes.01G002000.1.v6.1.CDS.2Manihot esculentaCDS
Manes.01G002000.1.v6.1.CDS.1Manes.01G002000.1.v6.1.CDS.1Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G002000.1.v6.1.three_prime_UTR.1Manes.01G002000.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G002000.1.v6.1 ID=Manes.01G002000.1.v6.1|Name=Manes.01G002000.1|organism=Manihot esculenta|type=mRNA|length=1861bp
AATAATATAGAAACCAGAAATGAGAAGGAAAGGTTAAGCTCGATTGATCT
CACAATCCATGTGAATTACACCTGGAAAACTTCTCTAGTTAGATAAAGGA
GTTTAGTTACTATAGCTCATGATAAAACTCTAAAACTCTGAATAAACTTT
GTCTCTCCAATATAAAGAAGTCTCCCCTTTTTAAAGGGGTAAACCTAGAC
TAAAGAGGAAGAAAATAAAATCTCCCTTTAAAAAGAGAAGAGACAATTTC
TAAAATTCTAGTCTTTCTGAAATCGTTTCTTTCCAAATTGGTCTTTTTCA
ATTATGCTCGGAAATCTTGTGATATTTCACGAATCATGCTCGCGGTCTTG
TGTACGAGGTATGCTTTGTCTGAGGTTGGCTTTGCGCGAGGCTTGATGAG
GTATGCTTTGCGAGAGGTCTGACGAGGTCTACTTTGCGAGAGGTCTGTTC
TGCGATTTCACTTCTAATTTCTGCCTAAATCTTTCAACTAAGAGTTTTTC
TTCCCAAAGAGTACAGAATCTATCAATATTGTAAAAAGGAAAGAAATGCC
CATAATTTAGCACAATCAAATCCAATTTTACAAGAAAGAATGTGCATTAA
ATAAGTAGAATATACACCTTATCAGGGATATAGAGAAAATATGTTCTCAT
TGCATTGCATATAGGTAGGCAAAGTCTAAGTTAATACCACATGGATCACA
TACAATCTTACCAGTTGCTACTAAGTCATTGATAGATATATCTATGGATT
TTATATTAGGATTGCCTAGAACTAGGAGGGGCAAGGATAATATTTTTTTT
ATGGATAGGTTCAATAAAATGATAAACTTTATAGCATGCCATAAAACTGA
TGATGTAGCATATATAGTTGATCTTTTCTTTAGGGAGGGGGTTTGATTGC
ATTGGATCTTTAGAGCCATTTTTGTTGGATGTTAAGTTCATGAGTCACTT
TAGAAGGCGTTATGGGGTAATTAGGTACTAAACTATTGTAGTCTAGTACT
TGGCCAAATAGAAGTATTTAACAGGATTTTGGGGAGTTTATTGCATGCAT
TAGTAGGAAAGAATTTGAAAACTAAGATGATTGTTTGTCATTCATTGGAA
ATTCACATATAATTATACTGTGCAGTCTTCTGCTAGTTTTCTCCATTAGA
AATTGTGTATGATTTTAATTCTTTAACTGCTTTGGATTTAACTTTTAGCA
TGAGGCAGCACAGCACAGAGCATAAAGCAGGAATGCTAAAATTTTAAACT
TTAGCAAATTGATTAGCAAACTAAAGCATATGTTTATACAGTAGCAAATG
ACTTAGCAAACTAAAACGTATATTTATGATAGTAGCAAATTAATTAGCAA
ACTAACATATGCAATAGCAAAGTATAAGCAAGCAAAACTAATCTTGTCTC
ATTAATTGAACACTCAAGCCATTAGTGCAAAACTAATCTTGTCTCATTAA
TTGAACACTCAAGCTATTAGTATATTTTGGTAAAAATACAAACTACATCA
AAAACTAAAAAGAATGGTGAGAGGTCTTACTTGCTTTGTAGCACAAGCAA
ACTTTTTCCTTGAAACTCTTAGACCCATAATGTGAGTCATCTGGTTTTTC
TAGACAAAACACTATAATAATTCTCCAAACTCTTGTGAGATCTTCTTTGC
TCCAAGCCCTTTCGAATGACCAACAAAGAAAACTGAGGTTTTCTTAAACA
ACAAAGGAGAATAGGTTATTAAACGATAATTTCTCTCCAATTTACCATGA
AAGTTTCAGCATGCAAAAGGAAAGGAAAAACTGATAACTTTTTATCCTAG
CATAAAGTGGAAGAAAATGAGAACGAAGGAATGAAGGAATGAGACAAACC
AATCTATCCAT
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mRNA from alignment at Chromosome01:368060..369920-

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G002000.1.v6.1 ID=Manes.01G002000.1.v6.1|Name=Manes.01G002000.1|organism=Manihot esculenta|type=mRNA|length=1861bp|location=Sequence derived from alignment at Chromosome01:368060..369920- (Manihot esculenta)
ATGGATAGATTGGTTTGTCTCATTCCTTCATTCCTTCGTTCTCATTTTCT TCCACTTTATGCTAGGATAAAAAGTTATCAGTTTTTCCTTTCCTTTTGCA TGCTGAAACTTTCATGGTAAATTGGAGAGAAATTATCGTTTAATAACCTA TTCTCCTTTGTTGTTTAAGAAAACCTCAGTTTTCTTTGTTGGTCATTCGA AAGGGCTTGGAGCAAAGAAGATCTCACAAGAGTTTGGAGAATTATTATAG TGTTTTGTCTAGAAAAACCAGATGACTCACATTATGGGTCTAAGAGTTTC AAGGAAAAAGTTTGCTTGTGCTACAAAGCAAGTAAGACCTCTCACCATTC TTTTTAGTTTTTGATGTAGTTTGTATTTTTACCAAAATATACTAATAGCT TGAGTGTTCAATTAATGAGACAAGATTAGTTTTGCACTAATGGCTTGAGT GTTCAATTAATGAGACAAGATTAGTTTTGCTTGCTTATACTTTGCTATTG CATATGTTAGTTTGCTAATTAATTTGCTACTATCATAAATATACGTTTTA GTTTGCTAAGTCATTTGCTACTGTATAAACATATGCTTTAGTTTGCTAAT CAATTTGCTAAAGTTTAAAATTTTAGCATTCCTGCTTTATGCTCTGTGCT GTGCTGCCTCATGCTAAAAGTTAAATCCAAAGCAGTTAAAGAATTAAAAT CATACACAATTTCTAATGGAGAAAACTAGCAGAAGACTGCACAGTATAAT TATATGTGAATTTCCAATGAATGACAAACAATCATCTTAGTTTTCAAATT CTTTCCTACTAATGCATGCAATAAACTCCCCAAAATCCTGTTAAATACTT CTATTTGGCCAAGTACTAGACTACAATAGTTTAGTACCTAATTACCCCAT AACGCCTTCTAAAGTGACTCATGAACTTAACATCCAACAAAAATGGCTCT AAAGATCCAATGCAATCAAACCCCCTCCCTAAAGAAAAGATCAACTATAT ATGCTACATCATCAGTTTTATGGCATGCTATAAAGTTTATCATTTTATTG AACCTATCCATAAAAAAAATATTATCCTTGCCCCTCCTAGTTCTAGGCAA TCCTAATATAAAATCCATAGATATATCTATCAATGACTTAGTAGCAACTG GTAAGATTGTATGTGATCCATGTGGTATTAACTTAGACTTTGCCTACCTA TATGCAATGCAATGAGAACATATTTTCTCTATATCCCTGATAAGGTGTAT ATTCTACTTATTTAATGCACATTCTTTCTTGTAAAATTGGATTTGATTGT GCTAAATTATGGGCATTTCTTTCCTTTTTACAATATTGATAGATTCTGTA CTCTTTGGGAAGAAAAACTCTTAGTTGAAAGATTTAGGCAGAAATTAGAA GTGAAATCGCAGAACAGACCTCTCGCAAAGTAGACCTCGTCAGACCTCTC GCAAAGCATACCTCATCAAGCCTCGCGCAAAGCCAACCTCAGACAAAGCA TACCTCGTACACAAGACCGCGAGCATGATTCGTGAAATATCACAAGATTT CCGAGCATAATTGAAAAAGACCAATTTGGAAAGAAACGATTTCAGAAAGA CTAGAATTTTAGAAATTGTCTCTTCTCTTTTTAAAGGGAGATTTTATTTT CTTCCTCTTTAGTCTAGGTTTACCCCTTTAAAAAGGGGAGACTTCTTTAT ATTGGAGAGACAAAGTTTATTCAGAGTTTTAGAGTTTTATCATGAGCTAT AGTAACTAAACTCCTTTATCTAACTAGAGAAGTTTTCCAGGTGTAATTCA CATGGATTGTGAGATCAATCGAGCTTAACCTTTCCTTCTCATTTCTGGTT TCTATATTATT
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Coding sequence (CDS) from alignment at Chromosome01:368060..369920-

>Manes.01G002000.1.v6.1 ID=Manes.01G002000.1.v6.1|Name=Manes.01G002000.1|organism=Manihot esculenta|type=CDS|length=276bp|location=Sequence derived from alignment at Chromosome01:368060..369920- (Manihot esculenta)
ATGGATAGATTGGTTTGTCTCATTCCTTCATTCCTTCGTTCTCATTTTCT
TCCACTTTATGCTAGGATAAAAAGTTATCAGTTTTTCCTTTCCTTTTGCA
TGCTGAAACTTTCATGGGCTTGGAGCAAAGAAGATCTCACAAGAGTTTGG
AGAATTATTATAGTGTTTTGTCTAGAAAAACCAGATGACTCACATTATGG
GTCTAAGAGTTTCAAGGAAAAAGTTTGCTTGTGCTACAAAGCAAATTCTG
TACTCTTTGGGAAGAAAAACTCTTAG
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