Manes.01G002000.1.v6.1 (mRNA)

Overview


Name	Manes.01G002000.1
Unique Name	Manes.01G002000.1.v6.1
Type	mRNA
Organism	Manihot esculenta (Cassava)
Sequence length	1861

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chromosome01	chromosome	Chromosome01:368060..369920 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)	2015-07-22

Properties


Property Name	Value
Pacid	32358561
Longest	1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Manes.01G002000	Manes.01G002000.v6.1	Manihot esculenta	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G002000.1	Manes.01G002000.1.v6.1-protein	Manihot esculenta	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G002000.1.v6.1.CDS.3	Manes.01G002000.1.v6.1.CDS.3	Manihot esculenta	CDS
Manes.01G002000.1.v6.1.CDS.2	Manes.01G002000.1.v6.1.CDS.2	Manihot esculenta	CDS
Manes.01G002000.1.v6.1.CDS.1	Manes.01G002000.1.v6.1.CDS.1	Manihot esculenta	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G002000.1.v6.1.three_prime_UTR.1	Manes.01G002000.1.v6.1.three_prime_UTR.1	Manihot esculenta	three_prime_UTR

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA from alignment at Chromosome01:368060..369920-
coding sequnece from alignment at Chromosome01:368060..369920-

mRNA sequence

>Manes.01G002000.1.v6.1 ID=Manes.01G002000.1.v6.1|Name=Manes.01G002000.1|organism=Manihot esculenta|type=mRNA|length=1861bp
AATAATATAGAAACCAGAAATGAGAAGGAAAGGTTAAGCTCGATTGATCT
CACAATCCATGTGAATTACACCTGGAAAACTTCTCTAGTTAGATAAAGGA
GTTTAGTTACTATAGCTCATGATAAAACTCTAAAACTCTGAATAAACTTT
GTCTCTCCAATATAAAGAAGTCTCCCCTTTTTAAAGGGGTAAACCTAGAC
TAAAGAGGAAGAAAATAAAATCTCCCTTTAAAAAGAGAAGAGACAATTTC
TAAAATTCTAGTCTTTCTGAAATCGTTTCTTTCCAAATTGGTCTTTTTCA
ATTATGCTCGGAAATCTTGTGATATTTCACGAATCATGCTCGCGGTCTTG
TGTACGAGGTATGCTTTGTCTGAGGTTGGCTTTGCGCGAGGCTTGATGAG
GTATGCTTTGCGAGAGGTCTGACGAGGTCTACTTTGCGAGAGGTCTGTTC
TGCGATTTCACTTCTAATTTCTGCCTAAATCTTTCAACTAAGAGTTTTTC
TTCCCAAAGAGTACAGAATCTATCAATATTGTAAAAAGGAAAGAAATGCC
CATAATTTAGCACAATCAAATCCAATTTTACAAGAAAGAATGTGCATTAA
ATAAGTAGAATATACACCTTATCAGGGATATAGAGAAAATATGTTCTCAT
TGCATTGCATATAGGTAGGCAAAGTCTAAGTTAATACCACATGGATCACA
TACAATCTTACCAGTTGCTACTAAGTCATTGATAGATATATCTATGGATT
TTATATTAGGATTGCCTAGAACTAGGAGGGGCAAGGATAATATTTTTTTT
ATGGATAGGTTCAATAAAATGATAAACTTTATAGCATGCCATAAAACTGA
TGATGTAGCATATATAGTTGATCTTTTCTTTAGGGAGGGGGTTTGATTGC
ATTGGATCTTTAGAGCCATTTTTGTTGGATGTTAAGTTCATGAGTCACTT
TAGAAGGCGTTATGGGGTAATTAGGTACTAAACTATTGTAGTCTAGTACT
TGGCCAAATAGAAGTATTTAACAGGATTTTGGGGAGTTTATTGCATGCAT
TAGTAGGAAAGAATTTGAAAACTAAGATGATTGTTTGTCATTCATTGGAA
ATTCACATATAATTATACTGTGCAGTCTTCTGCTAGTTTTCTCCATTAGA
AATTGTGTATGATTTTAATTCTTTAACTGCTTTGGATTTAACTTTTAGCA
TGAGGCAGCACAGCACAGAGCATAAAGCAGGAATGCTAAAATTTTAAACT
TTAGCAAATTGATTAGCAAACTAAAGCATATGTTTATACAGTAGCAAATG
ACTTAGCAAACTAAAACGTATATTTATGATAGTAGCAAATTAATTAGCAA
ACTAACATATGCAATAGCAAAGTATAAGCAAGCAAAACTAATCTTGTCTC
ATTAATTGAACACTCAAGCCATTAGTGCAAAACTAATCTTGTCTCATTAA
TTGAACACTCAAGCTATTAGTATATTTTGGTAAAAATACAAACTACATCA
AAAACTAAAAAGAATGGTGAGAGGTCTTACTTGCTTTGTAGCACAAGCAA
ACTTTTTCCTTGAAACTCTTAGACCCATAATGTGAGTCATCTGGTTTTTC
TAGACAAAACACTATAATAATTCTCCAAACTCTTGTGAGATCTTCTTTGC
TCCAAGCCCTTTCGAATGACCAACAAAGAAAACTGAGGTTTTCTTAAACA
ACAAAGGAGAATAGGTTATTAAACGATAATTTCTCTCCAATTTACCATGA
AAGTTTCAGCATGCAAAAGGAAAGGAAAAACTGATAACTTTTTATCCTAG
CATAAAGTGGAAGAAAATGAGAACGAAGGAATGAAGGAATGAGACAAACC
AATCTATCCAT

mRNA from alignment at Chromosome01:368060..369920-

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Manes.01G002000.1.v6.1 ID=Manes.01G002000.1.v6.1|Name=Manes.01G002000.1|organism=Manihot esculenta|type=mRNA|length=1861bp|location=Sequence derived from alignment at Chromosome01:368060..369920- (Manihot esculenta)
ATGGATAGATTGGTTTGTCTCATTCCTTCATTCCTTCGTTCTCATTTTCT
TCCACTTTATGCTAGGATAAAAAGTTATCAGTTTTTCCTTTCCTTTTGCA
TGCTGAAACTTTCATGGTAAATTGGAGAGAAATTATCGTTTAATAACCTA
TTCTCCTTTGTTGTTTAAGAAAACCTCAGTTTTCTTTGTTGGTCATTCGA
AAGGGCTTGGAGCAAAGAAGATCTCACAAGAGTTTGGAGAATTATTATAG
TGTTTTGTCTAGAAAAACCAGATGACTCACATTATGGGTCTAAGAGTTTC
AAGGAAAAAGTTTGCTTGTGCTACAAAGCAAGTAAGACCTCTCACCATTC
TTTTTAGTTTTTGATGTAGTTTGTATTTTTACCAAAATATACTAATAGCT
TGAGTGTTCAATTAATGAGACAAGATTAGTTTTGCACTAATGGCTTGAGT
GTTCAATTAATGAGACAAGATTAGTTTTGCTTGCTTATACTTTGCTATTG
CATATGTTAGTTTGCTAATTAATTTGCTACTATCATAAATATACGTTTTA
GTTTGCTAAGTCATTTGCTACTGTATAAACATATGCTTTAGTTTGCTAAT
CAATTTGCTAAAGTTTAAAATTTTAGCATTCCTGCTTTATGCTCTGTGCT
GTGCTGCCTCATGCTAAAAGTTAAATCCAAAGCAGTTAAAGAATTAAAAT
CATACACAATTTCTAATGGAGAAAACTAGCAGAAGACTGCACAGTATAAT
TATATGTGAATTTCCAATGAATGACAAACAATCATCTTAGTTTTCAAATT
CTTTCCTACTAATGCATGCAATAAACTCCCCAAAATCCTGTTAAATACTT
CTATTTGGCCAAGTACTAGACTACAATAGTTTAGTACCTAATTACCCCAT
AACGCCTTCTAAAGTGACTCATGAACTTAACATCCAACAAAAATGGCTCT
AAAGATCCAATGCAATCAAACCCCCTCCCTAAAGAAAAGATCAACTATAT
ATGCTACATCATCAGTTTTATGGCATGCTATAAAGTTTATCATTTTATTG
AACCTATCCATAAAAAAAATATTATCCTTGCCCCTCCTAGTTCTAGGCAA
TCCTAATATAAAATCCATAGATATATCTATCAATGACTTAGTAGCAACTG
GTAAGATTGTATGTGATCCATGTGGTATTAACTTAGACTTTGCCTACCTA
TATGCAATGCAATGAGAACATATTTTCTCTATATCCCTGATAAGGTGTAT
ATTCTACTTATTTAATGCACATTCTTTCTTGTAAAATTGGATTTGATTGT
GCTAAATTATGGGCATTTCTTTCCTTTTTACAATATTGATAGATTCTGTA
CTCTTTGGGAAGAAAAACTCTTAGTTGAAAGATTTAGGCAGAAATTAGAA
GTGAAATCGCAGAACAGACCTCTCGCAAAGTAGACCTCGTCAGACCTCTC
GCAAAGCATACCTCATCAAGCCTCGCGCAAAGCCAACCTCAGACAAAGCA
TACCTCGTACACAAGACCGCGAGCATGATTCGTGAAATATCACAAGATTT
CCGAGCATAATTGAAAAAGACCAATTTGGAAAGAAACGATTTCAGAAAGA
CTAGAATTTTAGAAATTGTCTCTTCTCTTTTTAAAGGGAGATTTTATTTT
CTTCCTCTTTAGTCTAGGTTTACCCCTTTAAAAAGGGGAGACTTCTTTAT
ATTGGAGAGACAAAGTTTATTCAGAGTTTTAGAGTTTTATCATGAGCTAT
AGTAACTAAACTCCTTTATCTAACTAGAGAAGTTTTCCAGGTGTAATTCA
CATGGATTGTGAGATCAATCGAGCTTAACCTTTCCTTCTCATTTCTGGTT
TCTATATTATT

Coding sequence (CDS) from alignment at Chromosome01:368060..369920-

>Manes.01G002000.1.v6.1 ID=Manes.01G002000.1.v6.1|Name=Manes.01G002000.1|organism=Manihot esculenta|type=CDS|length=276bp|location=Sequence derived from alignment at Chromosome01:368060..369920- (Manihot esculenta)
ATGGATAGATTGGTTTGTCTCATTCCTTCATTCCTTCGTTCTCATTTTCT
TCCACTTTATGCTAGGATAAAAAGTTATCAGTTTTTCCTTTCCTTTTGCA
TGCTGAAACTTTCATGGGCTTGGAGCAAAGAAGATCTCACAAGAGTTTGG
AGAATTATTATAGTGTTTTGTCTAGAAAAACCAGATGACTCACATTATGG
GTCTAAGAGTTTCAAGGAAAAAGTTTGCTTGTGCTACAAAGCAAATTCTG
TACTCTTTGGGAAGAAAAACTCTTAG