Manes.01G001900.4.v6.1 (mRNA)

Overview
NameManes.01G001900.4
Unique NameManes.01G001900.4.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length3656
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:354484..358139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32356996
Longest0
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G001900Manes.01G001900.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G001900.4Manes.01G001900.4.v6.1-proteinManihot esculentapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G001900.4.v6.1.five_prime_UTR.1Manes.01G001900.4.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR
Manes.01G001900.4.v6.1.five_prime_UTR.2Manes.01G001900.4.v6.1.five_prime_UTR.2Manihot esculentafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G001900.4.v6.1.CDS.1Manes.01G001900.4.v6.1.CDS.1Manihot esculentaCDS
Manes.01G001900.4.v6.1.CDS.2Manes.01G001900.4.v6.1.CDS.2Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G001900.4.v6.1.three_prime_UTR.1Manes.01G001900.4.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G001900.4.v6.1 ID=Manes.01G001900.4.v6.1|Name=Manes.01G001900.4|organism=Manihot esculenta|type=mRNA|length=3656bp
TCTCTCATCTTGTTGTTTCAATTGCCCCCATTGAGGTCTCAGGTGGCTGA
CTGCGAGGGAGGAAAAGAGGAGGTGGAGAATCATATCCCAGTTAATTGTT
GCGGATGAAGGGAGATCAACAAATATCATTGCTGCTGGATTGAAAGTGAA
GTTTGATTTCATCGAGAGAAGATGCAGCAAGGTGGGATTCCTATCCAATC
CCAATATGGAGCACCGCCAACTGCTTCTGCAACTGGTGCACTAAGCACCC
ACATGCTGCTGGCTGCAGGAACCGACCAATCTCAACAGCACCAGCAACAG
CAGCTGATTGTAGAAGAGGCCTCCCCCATTAGCAGTCGACCTCCTGCAAC
TACTGGGAATTTGGATGAATTCATGAGGCTGTCCGGTAGCGGAGATGAAG
CAGATCGAGCGGAAGGTATTTCAAGCAGCAACAGATGGCCCCGTCAAGAA
ACTCTCGCTCTTCTTCAAATTAGGTCTGATATGGATGCCGCCTTTCGTGA
TGCTACTGTCAAGGGTCCCCTCTGGGAAGATGTTTCCAGGTACTAAATAC
TTCCGATTCATCATATTTTCTCACTTTTTCTCCCTTTTTCCTTCCCCAAA
AAAAAAAAAAAAAATGGAGATTAGTTTCCGTCATCTTAACTGTTATAATT
ATTCTTTAAAAAAAATTTATAAGTCAAACTCTATGGTATTGCAGTGGGAA
TAATATGAGGGAAGGAGCTATTCTTTGATCAGATCTCCATCTCTCTTGTT
CTGCAATCAGACGCACATGGCTTCTATCTAAGGCTCTTACATCACTCATT
ATTTCTTATTAACAAAATTTGCCACTTTTTCTTATTTAAACATTAGATAA
TTTTTATTGGAGAAAGACAAGAGATCGGTGGGCCTTTAAAGCGAGGGAGG
TTCTCATCATCTTCTTCCTCTGGTCCATAAAATTAAATAAAATTGGAGTG
AATTTAATATACATAAAACCCGGCAAAAGGCAATTTTTGTGATGCGTATC
ATTAATTCAATTCTACAAATTTTATATTTTGCCAATGACGATAGTATTTT
ATTGGGTTGGCGTATTGCACAGGAAGCTGGCGGAGATGGGATACAAGAGA
AGTGCCAAGAAATGCAAAGAAAAATTTGAGAACGTCCACAAGTATTACAA
GCGAACCAAGGAAGGACGAGCTGGTCGTCAAGATGGCAAAAGCTACAGAT
TTTTCAGTCAACTGGAGGCTCTACATAACATCAACAGTAACACTTCAACT
ACATCCCTCAATCTTGTCTCAGCTTCTCAACCGGTGGCTACCACAGCCAC
TACCCTAGATGTTGCTCCTGTTTCCGTTGGGATCCCTATGCCTGTCTCCT
CCGTTAGAATTCCACCTTCAACTGTCGGCATGTCCTCCTCCTCCTCCATG
TTCCCTCCAGATTTGGCCGCAACTATGGCACCTGCTGTTCCTGTACCACC
CAGGCCGTTAGCAGGAATCAGCTTCTCCTCAACTTCAGATGGCTCTTCTT
CTTCTTCTGGATCCCACGAGGATGATGAGGATGACGACGATGACGATGAC
GATGTTGATAAGCCAACCAGCGTTGCCGCTGGTTCAAGCCGCAAACGTAA
AAGGCATTCTTCTAAAGGAGGTACCCGCCGAATGATGGAGTTCTTTGAGG
GCCTTATGAAACATGTTATACAAAAGCAAGAGGCCATGCAGCAGAGTTTC
CTGGAGGCCATAGAGAAGAGAGAACACGACAGGATGATAAGGGAGGAAGC
CTGGAAAAGACAAGAACTTGCCAGACAGAGCCGCGAGAATGAGCTTGTGG
CTCAAGAGCGGGCCATTTATGCTTCCAGAGATGCAGCAATAATTGCCTTT
CTACAGAAAATTACTGGCCAAACCATTCAGTTGCCTTCACCTGTAACAAT
TCCAGCAGTCCCACGACCAGCACCCCCATCACAACCACAAACTGTGTCAT
TGGCACCCGTAGTCACCGTCTCAACCCAACAGCCACCACCCCCACAACCG
CAAGCACAACCGGACCGATCACCACTGCCCCAACAAGATAAACAACAGCA
GCACCAAGTAGTCCATCATCAGCAGTCATCCATTTCCTCGGAAGTAGCAG
TGGCATTCCCAGAACAAGAGGTACCACCGCAGGAAATTGGTAATATTGGG
AGCCTTGAACCTACCTCCTCAAGATGGCCAAAAGCAGAAGTACTAGCACT
TATAAAGTTGAGGAGTGGGCTTGAATCCAGATACCAAGAAGTGGGGCCCA
AGGGCCCACTTTGGGAGGAAATCTCCGCTGGGATGCATCGGATGGGTTAC
AAGAGGAATGCCAAGAGATGCAAGGAAAAATGGGAGAACATCAACAAGTA
CTTCAAGAAGGTCAAGGAAAGTGACAAGAAACGCCCTGAAGATGCCAAGA
CCTGTCCCTATTTTCACGAACTAGATGCACTTTACAGAAAAAAGATACTT
GGCAGCAGTAGCGGAGGTGCTGGCGATGGTAGCACTACCAGTAGTAGCTT
TGCCAACCTGAATAGGCCACCAGAATCGCAGCAGCAGGCAAGCATGATAT
CAGATCCTCTTCCACCTACAAAGCCCGAGAGTAGGAGTGAGGTCTCAGCC
ACAGTGTTGGTGCAAGCCTCTGATTCACAAACTAAAATGGGTAGTGGAGC
AGATATCAATACAGTTTTGCCTGGAAGCCTCTTTGGAGAAGGAAATGGAG
GAGCAACGAAGGTAAATTTTTTTTTTTTTTTTTTTTTGCCTTTAAGTATT
TGAAGAACGCTCACCCATTGGTGTGCATTGATTAATTCTTGCTTCCATAT
TGAAGCCAGAAGACATCGTGAAAGAGTTTATAAAACTGCAGGGGATGCAA
AGACAACAGCAAATACAGTTGATGTTGCATGACTACGAGAAAATGGAGGA
AGGTAATGAGAGCGATAACACAGAGCAAGAGGATAATGAAGATGGTATGG
AAGACGTCGACTGCAATGACAACGACGAGGACGAGGACGGTGTCGAAGAT
GATGATGAACGGCAAGAAGAGAGAAAGATGGCATACAAGATAGAATTTCA
GAGGCAGAACACAAACGCCTCTAATGGAGGAGGAAACGGAACACCCTCTT
TTCTTGCGGTGGTTCAGTAGCCTCACCGACATCCTCAGCTTCCCAAAACG
TACCATATGCACCAAGTACTTTCGAAGCTCGAACAAGACATCTAACAATT
GAGTTGAAACTCTGACAACCTTAATTCTTCACTTTGAAATTTTCCCTTTT
CTTTTCCTTTCCTTTCCTTCTCTTCCGTCCTTTTCCTTCCATTTCTTCTT
ATCCAGAAAATTTCATTGTCATCCTCGTTGATCTGTTAAATTTTTTTTCC
CCATTAAATCTTCTTCCCAATACACTTATATGATCACTTATTTCAATTTA
TTTATTAATTTGTTGTTGAATAAAGGACCGTTTCAAGGTAACCAGAAGAT
TGATTTAAAGGAAGACCAAATAAGCTTGCTTGCTTGCTTGCCTATGATTG
TGAGACTGAGAAGCAAAGACAGCAAGAGATGAAATGGCAGAGAAATACAA
GTAATCTATGGTAATGTATGTTTGGGTACGCCTTCGATAAAGGGTTACCT
CATTTTATCTGTTGTTTCCATTTAATAATATAGTTTCAGTGAGCTGGAAT
CTAATT
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mRNA from alignment at Chromosome01:354484..358139+

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G001900.4.v6.1 ID=Manes.01G001900.4.v6.1|Name=Manes.01G001900.4|organism=Manihot esculenta|type=mRNA|length=3656bp|location=Sequence derived from alignment at Chromosome01:354484..358139+ (Manihot esculenta)
TCTCTCATCTTGTTGTTTCAATTGCCCCCATTGAGGTCTCAGGTGGCTGA CTGCGAGGGAGGAAAAGAGGAGGTGGAGAATCATATCCCAGTTAATTGTT GCGGATGAAGGGAGATCAACAAATATCATTGCTGCTGGATTGAAAGTGAA GTTTGATTTCATCGAGAGAAGATGCAGCAAGGTGGGATTCCTATCCAATC CCAATATGGAGCACCGCCAACTGCTTCTGCAACTGGTGCACTAAGCACCC ACATGCTGCTGGCTGCAGGAACCGACCAATCTCAACAGCACCAGCAACAG CAGCTGATTGTAGAAGAGGCCTCCCCCATTAGCAGTCGACCTCCTGCAAC TACTGGGAATTTGGATGAATTCATGAGGCTGTCCGGTAGCGGAGATGAAG CAGATCGAGCGGAAGGTATTTCAAGCAGCAACAGATGGCCCCGTCAAGAA ACTCTCGCTCTTCTTCAAATTAGGTCTGATATGGATGCCGCCTTTCGTGA TGCTACTGTCAAGGGTCCCCTCTGGGAAGATGTTTCCAGGTACTAAATAC TTCCGATTCATCATATTTTCTCACTTTTTCTCCCTTTTTCCTTCCCCAAA AAAAAAAAAAAAAATGGAGATTAGTTTCCGTCATCTTAACTGTTATAATT ATTCTTTAAAAAAAATTTATAAGTCAAACTCTATGGTATTGCAGTGGGAA TAATATGAGGGAAGGAGCTATTCTTTGATCAGATCTCCATCTCTCTTGTT CTGCAATCAGACGCACATGGCTTCTATCTAAGGCTCTTACATCACTCATT ATTTCTTATTAACAAAATTTGCCACTTTTTCTTATTTAAACATTAGATAA TTTTTATTGGAGAAAGACAAGAGATCGGTGGGCCTTTAAAGCGAGGGAGG TTCTCATCATCTTCTTCCTCTGGTCCATAAAATTAAATAAAATTGGAGTG AATTTAATATACATAAAACCCGGCAAAAGGCAATTTTTGTGATGCGTATC ATTAATTCAATTCTACAAATTTTATATTTTGCCAATGACGATAGTATTTT ATTGGGTTGGCGTATTGCACAGGAAGCTGGCGGAGATGGGATACAAGAGA AGTGCCAAGAAATGCAAAGAAAAATTTGAGAACGTCCACAAGTATTACAA GCGAACCAAGGAAGGACGAGCTGGTCGTCAAGATGGCAAAAGCTACAGAT TTTTCAGTCAACTGGAGGCTCTACATAACATCAACAGTAACACTTCAACT ACATCCCTCAATCTTGTCTCAGCTTCTCAACCGGTGGCTACCACAGCCAC TACCCTAGATGTTGCTCCTGTTTCCGTTGGGATCCCTATGCCTGTCTCCT CCGTTAGAATTCCACCTTCAACTGTCGGCATGTCCTCCTCCTCCTCCATG TTCCCTCCAGATTTGGCCGCAACTATGGCACCTGCTGTTCCTGTACCACC CAGGCCGTTAGCAGGAATCAGCTTCTCCTCAACTTCAGATGGCTCTTCTT CTTCTTCTGGATCCCACGAGGATGATGAGGATGACGACGATGACGATGAC GATGTTGATAAGCCAACCAGCGTTGCCGCTGGTTCAAGCCGCAAACGTAA AAGGCATTCTTCTAAAGGAGGTACCCGCCGAATGATGGAGTTCTTTGAGG GCCTTATGAAACATGTTATACAAAAGCAAGAGGCCATGCAGCAGAGTTTC CTGGAGGCCATAGAGAAGAGAGAACACGACAGGATGATAAGGGAGGAAGC CTGGAAAAGACAAGAACTTGCCAGACAGAGCCGCGAGAATGAGCTTGTGG CTCAAGAGCGGGCCATTTATGCTTCCAGAGATGCAGCAATAATTGCCTTT CTACAGAAAATTACTGGCCAAACCATTCAGTTGCCTTCACCTGTAACAAT TCCAGCAGTCCCACGACCAGCACCCCCATCACAACCACAAACTGTGTCAT TGGCACCCGTAGTCACCGTCTCAACCCAACAGCCACCACCCCCACAACCG CAAGCACAACCGGACCGATCACCACTGCCCCAACAAGATAAACAACAGCA GCACCAAGTAGTCCATCATCAGCAGTCATCCATTTCCTCGGAAGTAGCAG TGGCATTCCCAGAACAAGAGGTACCACCGCAGGAAATTGGTAATATTGGG AGCCTTGAACCTACCTCCTCAAGATGGCCAAAAGCAGAAGTACTAGCACT TATAAAGTTGAGGAGTGGGCTTGAATCCAGATACCAAGAAGTGGGGCCCA AGGGCCCACTTTGGGAGGAAATCTCCGCTGGGATGCATCGGATGGGTTAC AAGAGGAATGCCAAGAGATGCAAGGAAAAATGGGAGAACATCAACAAGTA CTTCAAGAAGGTCAAGGAAAGTGACAAGAAACGCCCTGAAGATGCCAAGA CCTGTCCCTATTTTCACGAACTAGATGCACTTTACAGAAAAAAGATACTT GGCAGCAGTAGCGGAGGTGCTGGCGATGGTAGCACTACCAGTAGTAGCTT TGCCAACCTGAATAGGCCACCAGAATCGCAGCAGCAGGCAAGCATGATAT CAGATCCTCTTCCACCTACAAAGCCCGAGAGTAGGAGTGAGGTCTCAGCC ACAGTGTTGGTGCAAGCCTCTGATTCACAAACTAAAATGGGTAGTGGAGC AGATATCAATACAGTTTTGCCTGGAAGCCTCTTTGGAGAAGGAAATGGAG GAGCAACGAAGGTAAATTTTTTTTTTTTTTTTTTTTTGCCTTTAAGTATT TGAAGAACGCTCACCCATTGGTGTGCATTGATTAATTCTTGCTTCCATAT TGAAGCCAGAAGACATCGTGAAAGAGTTTATAAAACTGCAGGGGATGCAA AGACAACAGCAAATACAGTTGATGTTGCATGACTACGAGAAAATGGAGGA AGGTAATGAGAGCGATAACACAGAGCAAGAGGATAATGAAGATGGTATGG AAGACGTCGACTGCAATGACAACGACGAGGACGAGGACGGTGTCGAAGAT GATGATGAACGGCAAGAAGAGAGAAAGATGGCATACAAGATAGAATTTCA GAGGCAGAACACAAACGCCTCTAATGGAGGAGGAAACGGAACACCCTCTT TTCTTGCGGTGGTTCAGTAGCCTCACCGACATCCTCAGCTTCCCAAAACG TACCATATGCACCAAGTACTTTCGAAGCTCGAACAAGACATCTAACAATT GAGTTGAAACTCTGACAACCTTAATTCTTCACTTTGAAATTTTCCCTTTT CTTTTCCTTTCCTTTCCTTCTCTTCCGTCCTTTTCCTTCCATTTCTTCTT ATCCAGAAAATTTCATTGTCATCCTCGTTGATCTGTTAAATTTTTTTTCC CCATTAAATCTTCTTCCCAATACACTTATATGATCACTTATTTCAATTTA TTTATTAATTTGTTGTTGAATAAAGGACCGTTTCAAGGTAACCAGAAGAT TGATTTAAAGGAAGACCAAATAAGCTTGCTTGCTTGCTTGCCTATGATTG TGAGACTGAGAAGCAAAGACAGCAAGAGATGAAATGGCAGAGAAATACAA GTAATCTATGGTAATGTATGTTTGGGTACGCCTTCGATAAAGGGTTACCT CATTTTATCTGTTGTTTCCATTTAATAATATAGTTTCAGTGAGCTGGAAT CTAATT
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Coding sequence (CDS) from alignment at Chromosome01:354484..358139+

>Manes.01G001900.4.v6.1 ID=Manes.01G001900.4.v6.1|Name=Manes.01G001900.4|organism=Manihot esculenta|type=CDS|length=1992bp|location=Sequence derived from alignment at Chromosome01:354484..358139+ (Manihot esculenta)
ATGACGATAGTATTTTATTGGGTTGGCGTATTGCACAGGAAGCTGGCGGA
GATGGGATACAAGAGAAGTGCCAAGAAATGCAAAGAAAAATTTGAGAACG
TCCACAAGTATTACAAGCGAACCAAGGAAGGACGAGCTGGTCGTCAAGAT
GGCAAAAGCTACAGATTTTTCAGTCAACTGGAGGCTCTACATAACATCAA
CAGTAACACTTCAACTACATCCCTCAATCTTGTCTCAGCTTCTCAACCGG
TGGCTACCACAGCCACTACCCTAGATGTTGCTCCTGTTTCCGTTGGGATC
CCTATGCCTGTCTCCTCCGTTAGAATTCCACCTTCAACTGTCGGCATGTC
CTCCTCCTCCTCCATGTTCCCTCCAGATTTGGCCGCAACTATGGCACCTG
CTGTTCCTGTACCACCCAGGCCGTTAGCAGGAATCAGCTTCTCCTCAACT
TCAGATGGCTCTTCTTCTTCTTCTGGATCCCACGAGGATGATGAGGATGA
CGACGATGACGATGACGATGTTGATAAGCCAACCAGCGTTGCCGCTGGTT
CAAGCCGCAAACGTAAAAGGCATTCTTCTAAAGGAGGTACCCGCCGAATG
ATGGAGTTCTTTGAGGGCCTTATGAAACATGTTATACAAAAGCAAGAGGC
CATGCAGCAGAGTTTCCTGGAGGCCATAGAGAAGAGAGAACACGACAGGA
TGATAAGGGAGGAAGCCTGGAAAAGACAAGAACTTGCCAGACAGAGCCGC
GAGAATGAGCTTGTGGCTCAAGAGCGGGCCATTTATGCTTCCAGAGATGC
AGCAATAATTGCCTTTCTACAGAAAATTACTGGCCAAACCATTCAGTTGC
CTTCACCTGTAACAATTCCAGCAGTCCCACGACCAGCACCCCCATCACAA
CCACAAACTGTGTCATTGGCACCCGTAGTCACCGTCTCAACCCAACAGCC
ACCACCCCCACAACCGCAAGCACAACCGGACCGATCACCACTGCCCCAAC
AAGATAAACAACAGCAGCACCAAGTAGTCCATCATCAGCAGTCATCCATT
TCCTCGGAAGTAGCAGTGGCATTCCCAGAACAAGAGGTACCACCGCAGGA
AATTGGTAATATTGGGAGCCTTGAACCTACCTCCTCAAGATGGCCAAAAG
CAGAAGTACTAGCACTTATAAAGTTGAGGAGTGGGCTTGAATCCAGATAC
CAAGAAGTGGGGCCCAAGGGCCCACTTTGGGAGGAAATCTCCGCTGGGAT
GCATCGGATGGGTTACAAGAGGAATGCCAAGAGATGCAAGGAAAAATGGG
AGAACATCAACAAGTACTTCAAGAAGGTCAAGGAAAGTGACAAGAAACGC
CCTGAAGATGCCAAGACCTGTCCCTATTTTCACGAACTAGATGCACTTTA
CAGAAAAAAGATACTTGGCAGCAGTAGCGGAGGTGCTGGCGATGGTAGCA
CTACCAGTAGTAGCTTTGCCAACCTGAATAGGCCACCAGAATCGCAGCAG
CAGGCAAGCATGATATCAGATCCTCTTCCACCTACAAAGCCCGAGAGTAG
GAGTGAGGTCTCAGCCACAGTGTTGGTGCAAGCCTCTGATTCACAAACTA
AAATGGGTAGTGGAGCAGATATCAATACAGTTTTGCCTGGAAGCCTCTTT
GGAGAAGGAAATGGAGGAGCAACGAAGCCAGAAGACATCGTGAAAGAGTT
TATAAAACTGCAGGGGATGCAAAGACAACAGCAAATACAGTTGATGTTGC
ATGACTACGAGAAAATGGAGGAAGGTAATGAGAGCGATAACACAGAGCAA
GAGGATAATGAAGATGGTATGGAAGACGTCGACTGCAATGACAACGACGA
GGACGAGGACGGTGTCGAAGATGATGATGAACGGCAAGAAGAGAGAAAGA
TGGCATACAAGATAGAATTTCAGAGGCAGAACACAAACGCCTCTAATGGA
GGAGGAAACGGAACACCCTCTTTTCTTGCGGTGGTTCAGTAG
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