Manes.01G001900.2.v6.1 (mRNA)

Overview
NameManes.01G001900.2
Unique NameManes.01G001900.2.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length3673
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:354467..358139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32356995
Longest0
AncestorIdentifiercassava4.1_002193m.v4.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G001900Manes.01G001900.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G001900.2Manes.01G001900.2.v6.1-proteinManihot esculentapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G001900.2.v6.1.five_prime_UTR.1Manes.01G001900.2.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G001900.2.v6.1.CDS.1Manes.01G001900.2.v6.1.CDS.1Manihot esculentaCDS
Manes.01G001900.2.v6.1.CDS.2Manes.01G001900.2.v6.1.CDS.2Manihot esculentaCDS
Manes.01G001900.2.v6.1.CDS.3Manes.01G001900.2.v6.1.CDS.3Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G001900.2.v6.1.three_prime_UTR.1Manes.01G001900.2.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G001900.2.v6.1 ID=Manes.01G001900.2.v6.1|Name=Manes.01G001900.2|organism=Manihot esculenta|type=mRNA|length=3673bp
CTCTTGTTTGTTATTCCTCTCTCATCTTGTTGTTTCAATTGCCCCCATTG
AGGTCTCAGGTGGCTGACTGCGAGGGAGGAAAAGAGGAGGTGGAGAATCA
TATCCCAGTTAATTGTTGCGGATGAAGGGAGATCAACAAATATCATTGCT
GCTGGATTGAAAGTGAAGTTTGATTTCATCGAGAGAAGATGCAGCAAGGT
GGGATTCCTATCCAATCCCAATATGGAGCACCGCCAACTGCTTCTGCAAC
TGGTGCACTAAGCACCCACATGCTGCTGGCTGCAGGAACCGACCAATCTC
AACAGCACCAGCAACAGCAGCTGATTGTAGAAGAGGCCTCCCCCATTAGC
AGTCGACCTCCTGCAACTACTGGGAATTTGGATGAATTCATGAGGCTGTC
CGGTAGCGGAGATGAAGCAGATCGAGCGGAAGGTATTTCAAGCAGCAACA
GATGGCCCCGTCAAGAAACTCTCGCTCTTCTTCAAATTAGGTCTGATATG
GATGCCGCCTTTCGTGATGCTACTGTCAAGGGTCCCCTCTGGGAAGATGT
TTCCAGGTACTAAATACTTCCGATTCATCATATTTTCTCACTTTTTCTCC
CTTTTTCCTTCCCCAAAAAAAAAAAAAAAAATGGAGATTAGTTTCCGTCA
TCTTAACTGTTATAATTATTCTTTAAAAAAAATTTATAAGTCAAACTCTA
TGGTATTGCAGTGGGAATAATATGAGGGAAGGAGCTATTCTTTGATCAGA
TCTCCATCTCTCTTGTTCTGCAATCAGACGCACATGGCTTCTATCTAAGG
CTCTTACATCACTCATTATTTCTTATTAACAAAATTTGCCACTTTTTCTT
ATTTAAACATTAGATAATTTTTATTGGAGAAAGACAAGAGATCGGTGGGC
CTTTAAAGCGAGGGAGGTTCTCATCATCTTCTTCCTCTGGTCCATAAAAT
TAAATAAAATTGGAGTGAATTTAATATACATAAAACCCGGCAAAAGGCAA
TTTTTGTGATGCGTATCATTAATTCAATTCTACAAATTTTATATTTTGCC
AATGACGATAGTATTTTATTGGGTTGGCGTATTGCACAGGAAGCTGGCGG
AGATGGGATACAAGAGAAGTGCCAAGAAATGCAAAGAAAAATTTGAGAAC
GTCCACAAGTATTACAAGCGAACCAAGGAAGGACGAGCTGGTCGTCAAGA
TGGCAAAAGCTACAGATTTTTCAGTCAACTGGAGGCTCTACATAACATCA
ACAGTAACACTTCAACTACATCCCTCAATCTTGTCTCAGCTTCTCAACCG
GTGGCTACCACAGCCACTACCCTAGATGTTGCTCCTGTTTCCGTTGGGAT
CCCTATGCCTGTCTCCTCCGTTAGAATTCCACCTTCAACTGTCGGCATGT
CCTCCTCCTCCTCCATGTTCCCTCCAGATTTGGCCGCAACTATGGCACCT
GCTGTTCCTGTACCACCCAGGCCGTTAGCAGGAATCAGCTTCTCCTCAAC
TTCAGATGGCTCTTCTTCTTCTTCTGGATCCCACGAGGATGATGAGGATG
ACGACGATGACGATGACGATGTTGATAAGCCAACCAGCGTTGCCGCTGGT
TCAAGCCGCAAACGTAAAAGGCATTCTTCTAAAGGAGGTACCCGCCGAAT
GATGGAGTTCTTTGAGGGCCTTATGAAACATGTTATACAAAAGCAAGAGG
CCATGCAGCAGAGTTTCCTGGAGGCCATAGAGAAGAGAGAACACGACAGG
ATGATAAGGGAGGAAGCCTGGAAAAGACAAGAACTTGCCAGACAGAGCCG
CGAGAATGAGCTTGTGGCTCAAGAGCGGGCCATTTATGCTTCCAGAGATG
CAGCAATAATTGCCTTTCTACAGAAAATTACTGGCCAAACCATTCAGTTG
CCTTCACCTGTAACAATTCCAGCAGTCCCACGACCAGCACCCCCATCACA
ACCACAAACTGTGTCATTGGCACCCGTAGTCACCGTCTCAACCCAACAGC
CACCACCCCCACAACCGCAAGCACAACCGGACCGATCACCACTGCCCCAA
CAAGATAAACAACAGCAGCACCAAGTAGTCCATCATCAGCAGTCATCCAT
TTCCTCGGAAGTAGCAGTGGCATTCCCAGAACAAGAGGTACCACCGCAGG
AAATTGGTAATATTGGGAGCCTTGAACCTACCTCCTCAAGATGGCCAAAA
GCAGAAGTACTAGCACTTATAAAGTTGAGGAGTGGGCTTGAATCCAGATA
CCAAGAAGTGGGGCCCAAGGGCCCACTTTGGGAGGAAATCTCCGCTGGGA
TGCATCGGATGGGTTACAAGAGGAATGCCAAGAGATGCAAGGAAAAATGG
GAGAACATCAACAAGTACTTCAAGAAGGTCAAGGAAAGTGACAAGAAACG
CCCTGAAGATGCCAAGACCTGTCCCTATTTTCACGAACTAGATGCACTTT
ACAGAAAAAAGATACTTGGCAGCAGTAGCGGAGGTGCTGGCGATGGTAGC
ACTACCAGTAGTAGCTTTGCCAACCTGAATAGGCCACCAGAATCGCAGCA
GCAGGCAAGCATGATATCAGATCCTCTTCCACCTACAAAGCCCGAGAGTA
GGAGTGAGGTCTCAGCCACAGTGTTGGTGCAAGCCTCTGATTCACAAACT
AAAATGGGTAGTGGAGCAGATATCAATACAGTTTTGCCTGGAAGCCTCTT
TGGAGAAGGAAATGGAGGAGCAACGAAGGTAAATTTTTTTTTTTTTTTTT
TTTTGCCTTTAAGTATTTGAAGAACGCTCACCCATTGGTGTGCATTGATT
AATTCTTGCTTCCATATTGAAGCCAGAAGACATCGTGAAAGAGTTTATAA
AACTGCAGGGGATGCAAAGACAACAGCAAATACAGTTGATGTTGCATGAC
TACGAGAAAATGGAGGAAGGTAATGAGAGCGATAACACAGAGCAAGAGGA
TAATGAAGATGGTATGGAAGACGTCGACTGCAATGACAACGACGAGGACG
AGGACGGTGTCGAAGATGATGATGAACGGCAAGAAGAGAGAAAGATGGCA
TACAAGATAGAATTTCAGAGGCAGAACACAAACGCCTCTAATGGAGGAGG
AAACGGAACACCCTCTTTTCTTGCGGTGGTTCAGTAGCCTCACCGACATC
CTCAGCTTCCCAAAACGTACCATATGCACCAAGTACTTTCGAAGCTCGAA
CAAGACATCTAACAATTGAGTTGAAACTCTGACAACCTTAATTCTTCACT
TTGAAATTTTCCCTTTTCTTTTCCTTTCCTTTCCTTCTCTTCCGTCCTTT
TCCTTCCATTTCTTCTTATCCAGAAAATTTCATTGTCATCCTCGTTGATC
TGTTAAATTTTTTTTCCCCATTAAATCTTCTTCCCAATACACTTATATGA
TCACTTATTTCAATTTATTTATTAATTTGTTGTTGAATAAAGGACCGTTT
CAAGGTAACCAGAAGATTGATTTAAAGGAAGACCAAATAAGCTTGCTTGC
TTGCTTGCCTATGATTGTGAGACTGAGAAGCAAAGACAGCAAGAGATGAA
ATGGCAGAGAAATACAAGTAATCTATGGTAATGTATGTTTGGGTACGCCT
TCGATAAAGGGTTACCTCATTTTATCTGTTGTTTCCATTTAATAATATAG
TTTCAGTGAGCTGGAATCTAATT
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mRNA from alignment at Chromosome01:354467..358139+

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G001900.2.v6.1 ID=Manes.01G001900.2.v6.1|Name=Manes.01G001900.2|organism=Manihot esculenta|type=mRNA|length=3673bp|location=Sequence derived from alignment at Chromosome01:354467..358139+ (Manihot esculenta)
CTCTTGTTTGTTATTCCTCTCTCATCTTGTTGTTTCAATTGCCCCCATTG AGGTCTCAGGTGGCTGACTGCGAGGGAGGAAAAGAGGAGGTGGAGAATCA TATCCCAGTTAATTGTTGCGGATGAAGGGAGATCAACAAATATCATTGCT GCTGGATTGAAAGTGAAGTTTGATTTCATCGAGAGAAGATGCAGCAAGGT GGGATTCCTATCCAATCCCAATATGGAGCACCGCCAACTGCTTCTGCAAC TGGTGCACTAAGCACCCACATGCTGCTGGCTGCAGGAACCGACCAATCTC AACAGCACCAGCAACAGCAGCTGATTGTAGAAGAGGCCTCCCCCATTAGC AGTCGACCTCCTGCAACTACTGGGAATTTGGATGAATTCATGAGGCTGTC CGGTAGCGGAGATGAAGCAGATCGAGCGGAAGGTATTTCAAGCAGCAACA GATGGCCCCGTCAAGAAACTCTCGCTCTTCTTCAAATTAGGTCTGATATG GATGCCGCCTTTCGTGATGCTACTGTCAAGGGTCCCCTCTGGGAAGATGT TTCCAGGTACTAAATACTTCCGATTCATCATATTTTCTCACTTTTTCTCC CTTTTTCCTTCCCCAAAAAAAAAAAAAAAAATGGAGATTAGTTTCCGTCA TCTTAACTGTTATAATTATTCTTTAAAAAAAATTTATAAGTCAAACTCTA TGGTATTGCAGTGGGAATAATATGAGGGAAGGAGCTATTCTTTGATCAGA TCTCCATCTCTCTTGTTCTGCAATCAGACGCACATGGCTTCTATCTAAGG CTCTTACATCACTCATTATTTCTTATTAACAAAATTTGCCACTTTTTCTT ATTTAAACATTAGATAATTTTTATTGGAGAAAGACAAGAGATCGGTGGGC CTTTAAAGCGAGGGAGGTTCTCATCATCTTCTTCCTCTGGTCCATAAAAT TAAATAAAATTGGAGTGAATTTAATATACATAAAACCCGGCAAAAGGCAA TTTTTGTGATGCGTATCATTAATTCAATTCTACAAATTTTATATTTTGCC AATGACGATAGTATTTTATTGGGTTGGCGTATTGCACAGGAAGCTGGCGG AGATGGGATACAAGAGAAGTGCCAAGAAATGCAAAGAAAAATTTGAGAAC GTCCACAAGTATTACAAGCGAACCAAGGAAGGACGAGCTGGTCGTCAAGA TGGCAAAAGCTACAGATTTTTCAGTCAACTGGAGGCTCTACATAACATCA ACAGTAACACTTCAACTACATCCCTCAATCTTGTCTCAGCTTCTCAACCG GTGGCTACCACAGCCACTACCCTAGATGTTGCTCCTGTTTCCGTTGGGAT CCCTATGCCTGTCTCCTCCGTTAGAATTCCACCTTCAACTGTCGGCATGT CCTCCTCCTCCTCCATGTTCCCTCCAGATTTGGCCGCAACTATGGCACCT GCTGTTCCTGTACCACCCAGGCCGTTAGCAGGAATCAGCTTCTCCTCAAC TTCAGATGGCTCTTCTTCTTCTTCTGGATCCCACGAGGATGATGAGGATG ACGACGATGACGATGACGATGTTGATAAGCCAACCAGCGTTGCCGCTGGT TCAAGCCGCAAACGTAAAAGGCATTCTTCTAAAGGAGGTACCCGCCGAAT GATGGAGTTCTTTGAGGGCCTTATGAAACATGTTATACAAAAGCAAGAGG CCATGCAGCAGAGTTTCCTGGAGGCCATAGAGAAGAGAGAACACGACAGG ATGATAAGGGAGGAAGCCTGGAAAAGACAAGAACTTGCCAGACAGAGCCG CGAGAATGAGCTTGTGGCTCAAGAGCGGGCCATTTATGCTTCCAGAGATG CAGCAATAATTGCCTTTCTACAGAAAATTACTGGCCAAACCATTCAGTTG CCTTCACCTGTAACAATTCCAGCAGTCCCACGACCAGCACCCCCATCACA ACCACAAACTGTGTCATTGGCACCCGTAGTCACCGTCTCAACCCAACAGC CACCACCCCCACAACCGCAAGCACAACCGGACCGATCACCACTGCCCCAA CAAGATAAACAACAGCAGCACCAAGTAGTCCATCATCAGCAGTCATCCAT TTCCTCGGAAGTAGCAGTGGCATTCCCAGAACAAGAGGTACCACCGCAGG AAATTGGTAATATTGGGAGCCTTGAACCTACCTCCTCAAGATGGCCAAAA GCAGAAGTACTAGCACTTATAAAGTTGAGGAGTGGGCTTGAATCCAGATA CCAAGAAGTGGGGCCCAAGGGCCCACTTTGGGAGGAAATCTCCGCTGGGA TGCATCGGATGGGTTACAAGAGGAATGCCAAGAGATGCAAGGAAAAATGG GAGAACATCAACAAGTACTTCAAGAAGGTCAAGGAAAGTGACAAGAAACG CCCTGAAGATGCCAAGACCTGTCCCTATTTTCACGAACTAGATGCACTTT ACAGAAAAAAGATACTTGGCAGCAGTAGCGGAGGTGCTGGCGATGGTAGC ACTACCAGTAGTAGCTTTGCCAACCTGAATAGGCCACCAGAATCGCAGCA GCAGGCAAGCATGATATCAGATCCTCTTCCACCTACAAAGCCCGAGAGTA GGAGTGAGGTCTCAGCCACAGTGTTGGTGCAAGCCTCTGATTCACAAACT AAAATGGGTAGTGGAGCAGATATCAATACAGTTTTGCCTGGAAGCCTCTT TGGAGAAGGAAATGGAGGAGCAACGAAGGTAAATTTTTTTTTTTTTTTTT TTTTGCCTTTAAGTATTTGAAGAACGCTCACCCATTGGTGTGCATTGATT AATTCTTGCTTCCATATTGAAGCCAGAAGACATCGTGAAAGAGTTTATAA AACTGCAGGGGATGCAAAGACAACAGCAAATACAGTTGATGTTGCATGAC TACGAGAAAATGGAGGAAGGTAATGAGAGCGATAACACAGAGCAAGAGGA TAATGAAGATGGTATGGAAGACGTCGACTGCAATGACAACGACGAGGACG AGGACGGTGTCGAAGATGATGATGAACGGCAAGAAGAGAGAAAGATGGCA TACAAGATAGAATTTCAGAGGCAGAACACAAACGCCTCTAATGGAGGAGG AAACGGAACACCCTCTTTTCTTGCGGTGGTTCAGTAGCCTCACCGACATC CTCAGCTTCCCAAAACGTACCATATGCACCAAGTACTTTCGAAGCTCGAA CAAGACATCTAACAATTGAGTTGAAACTCTGACAACCTTAATTCTTCACT TTGAAATTTTCCCTTTTCTTTTCCTTTCCTTTCCTTCTCTTCCGTCCTTT TCCTTCCATTTCTTCTTATCCAGAAAATTTCATTGTCATCCTCGTTGATC TGTTAAATTTTTTTTCCCCATTAAATCTTCTTCCCAATACACTTATATGA TCACTTATTTCAATTTATTTATTAATTTGTTGTTGAATAAAGGACCGTTT CAAGGTAACCAGAAGATTGATTTAAAGGAAGACCAAATAAGCTTGCTTGC TTGCTTGCCTATGATTGTGAGACTGAGAAGCAAAGACAGCAAGAGATGAA ATGGCAGAGAAATACAAGTAATCTATGGTAATGTATGTTTGGGTACGCCT TCGATAAAGGGTTACCTCATTTTATCTGTTGTTTCCATTTAATAATATAG TTTCAGTGAGCTGGAATCTAATT
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Coding sequence (CDS) from alignment at Chromosome01:354467..358139+

>Manes.01G001900.2.v6.1 ID=Manes.01G001900.2.v6.1|Name=Manes.01G001900.2|organism=Manihot esculenta|type=CDS|length=2286bp|location=Sequence derived from alignment at Chromosome01:354467..358139+ (Manihot esculenta)
ATGCAGCAAGGTGGGATTCCTATCCAATCCCAATATGGAGCACCGCCAAC
TGCTTCTGCAACTGGTGCACTAAGCACCCACATGCTGCTGGCTGCAGGAA
CCGACCAATCTCAACAGCACCAGCAACAGCAGCTGATTGTAGAAGAGGCC
TCCCCCATTAGCAGTCGACCTCCTGCAACTACTGGGAATTTGGATGAATT
CATGAGGCTGTCCGGTAGCGGAGATGAAGCAGATCGAGCGGAAGGTATTT
CAAGCAGCAACAGATGGCCCCGTCAAGAAACTCTCGCTCTTCTTCAAATT
AGGTCTGATATGGATGCCGCCTTTCGTGATGCTACTGTCAAGGGTCCCCT
CTGGGAAGATGTTTCCAGGAAGCTGGCGGAGATGGGATACAAGAGAAGTG
CCAAGAAATGCAAAGAAAAATTTGAGAACGTCCACAAGTATTACAAGCGA
ACCAAGGAAGGACGAGCTGGTCGTCAAGATGGCAAAAGCTACAGATTTTT
CAGTCAACTGGAGGCTCTACATAACATCAACAGTAACACTTCAACTACAT
CCCTCAATCTTGTCTCAGCTTCTCAACCGGTGGCTACCACAGCCACTACC
CTAGATGTTGCTCCTGTTTCCGTTGGGATCCCTATGCCTGTCTCCTCCGT
TAGAATTCCACCTTCAACTGTCGGCATGTCCTCCTCCTCCTCCATGTTCC
CTCCAGATTTGGCCGCAACTATGGCACCTGCTGTTCCTGTACCACCCAGG
CCGTTAGCAGGAATCAGCTTCTCCTCAACTTCAGATGGCTCTTCTTCTTC
TTCTGGATCCCACGAGGATGATGAGGATGACGACGATGACGATGACGATG
TTGATAAGCCAACCAGCGTTGCCGCTGGTTCAAGCCGCAAACGTAAAAGG
CATTCTTCTAAAGGAGGTACCCGCCGAATGATGGAGTTCTTTGAGGGCCT
TATGAAACATGTTATACAAAAGCAAGAGGCCATGCAGCAGAGTTTCCTGG
AGGCCATAGAGAAGAGAGAACACGACAGGATGATAAGGGAGGAAGCCTGG
AAAAGACAAGAACTTGCCAGACAGAGCCGCGAGAATGAGCTTGTGGCTCA
AGAGCGGGCCATTTATGCTTCCAGAGATGCAGCAATAATTGCCTTTCTAC
AGAAAATTACTGGCCAAACCATTCAGTTGCCTTCACCTGTAACAATTCCA
GCAGTCCCACGACCAGCACCCCCATCACAACCACAAACTGTGTCATTGGC
ACCCGTAGTCACCGTCTCAACCCAACAGCCACCACCCCCACAACCGCAAG
CACAACCGGACCGATCACCACTGCCCCAACAAGATAAACAACAGCAGCAC
CAAGTAGTCCATCATCAGCAGTCATCCATTTCCTCGGAAGTAGCAGTGGC
ATTCCCAGAACAAGAGGTACCACCGCAGGAAATTGGTAATATTGGGAGCC
TTGAACCTACCTCCTCAAGATGGCCAAAAGCAGAAGTACTAGCACTTATA
AAGTTGAGGAGTGGGCTTGAATCCAGATACCAAGAAGTGGGGCCCAAGGG
CCCACTTTGGGAGGAAATCTCCGCTGGGATGCATCGGATGGGTTACAAGA
GGAATGCCAAGAGATGCAAGGAAAAATGGGAGAACATCAACAAGTACTTC
AAGAAGGTCAAGGAAAGTGACAAGAAACGCCCTGAAGATGCCAAGACCTG
TCCCTATTTTCACGAACTAGATGCACTTTACAGAAAAAAGATACTTGGCA
GCAGTAGCGGAGGTGCTGGCGATGGTAGCACTACCAGTAGTAGCTTTGCC
AACCTGAATAGGCCACCAGAATCGCAGCAGCAGGCAAGCATGATATCAGA
TCCTCTTCCACCTACAAAGCCCGAGAGTAGGAGTGAGGTCTCAGCCACAG
TGTTGGTGCAAGCCTCTGATTCACAAACTAAAATGGGTAGTGGAGCAGAT
ATCAATACAGTTTTGCCTGGAAGCCTCTTTGGAGAAGGAAATGGAGGAGC
AACGAAGGGGATGCAAAGACAACAGCAAATACAGTTGATGTTGCATGACT
ACGAGAAAATGGAGGAAGGTAATGAGAGCGATAACACAGAGCAAGAGGAT
AATGAAGATGGTATGGAAGACGTCGACTGCAATGACAACGACGAGGACGA
GGACGGTGTCGAAGATGATGATGAACGGCAAGAAGAGAGAAAGATGGCAT
ACAAGATAGAATTTCAGAGGCAGAACACAAACGCCTCTAATGGAGGAGGA
AACGGAACACCCTCTTTTCTTGCGGTGGTTCAGTAG
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