Manes.01G001600.1.v6.1 (mRNA)

Overview
NameManes.01G001600.1
Unique NameManes.01G001600.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length1600
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:293773..295372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32357881
Longest1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G001600Manes.01G001600.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G001600.1Manes.01G001600.1.v6.1-proteinManihot esculentapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G001600.1.v6.1.five_prime_UTR.1Manes.01G001600.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G001600.1.v6.1.CDS.1Manes.01G001600.1.v6.1.CDS.1Manihot esculentaCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G001600.1.v6.1 ID=Manes.01G001600.1.v6.1|Name=Manes.01G001600.1|organism=Manihot esculenta|type=mRNA|length=1600bp
CTAATGTCCCATGTAAGGAGCACTGCCTTGTTGAGCTCTGCCAGCACCGC
TCTGTCCCATATGAGGGTTCATCTGTAGGTTCGGATATCCACCCTGCATA
CCTGGTTCAATCGCGTATCCCCCACCAGCCTGATTACCGTATCCAGCAGG
CGGCCCCCCCATATTCACTGGTGCACCACCAAGCCCTCCAAGCAGATTAC
CAAGCCCCAAAGCCGTTAAGGCCTGCCCAAGCGCCGGGTTCAAACCTTGG
GGTGCCATTCCCGGACTGAAGTTCACAGATGGCCCAGACGGTGCCATCAA
ATGACCAGGGCCGTGTGCACCAGACGAGTACTTACCTTTCTTGGCTGTGT
GCTGGTAATGTGGCTGATGATGGTGATGCTGATGGTGAACTGCACCATAA
CCCGTCTTGTTTGATTTTTGCCCATCTATGGCCTTCTGGCAATGCAGCGT
ATGACCCTCAAACTTCTTGTGAGGCTCCTCAAGTGCCTTCTTTGCACTCT
CAACTGACTTATACACGAATAATGCAAACCCCTTGGGTTTTCCGGTCTGC
TTATCAAGCCCAAGTGGACCTTCCTCAATCTCCCCGTACTGCCTAAAGAA
CTCCAGAAGCTTCTCAGGATCTATCTCAGCTGATACATTGCTTACGAAAA
TCTTCCTCTGAGTGTACTCGGACACTGCTGACGTAGTTGGGGGTGGAGCT
GGTACAGGCCCTGCAGTGGCCAACTGACAGGACGTAATCCTATTACCTAT
CTTTTTCTGGGGCTGCCTGAGGGCTTTTCGTGCCCCAGCTCGCTGCTTGA
ATAATATAAAGGCATAGCCTTTAGATTTCCCTGAAACACGGTCGGTCACG
GCCTTACAGTCCTCTATCTCCCCGTACTTCCCAAACTCAGATTTGAGGGT
TTCAGCAGTGGTATCCCAGCCGAGACCGTGCACAAAGATCTTGCGGTGAG
CGGGGTCAGCATCCGCAATTTCACGCACAGAATCCATCAAATCAGGATGC
TTGTCCACGGACTTTCTGAGGAGGGCAACCAGTTGGTCTTTCCCGAAAGG
CTCTAGAAGCTTCTCTAGAGAGTCGTCGTCTTCATTTTCCTCTTCCTCAG
TTGCTTCGTTTCCATTACTAGCACCTTCATTAGCACTATTGGCTTCAGCT
ATTTCTGGGTTTGACTGTGCTACATCACTTGATGAGACTTCTAGGTTATG
AGAGTGATGTTCTTCCGGTTGTTTATCTTCTCCTTCTCCTCCTTCTTCGT
CTTCTTCTTCTGGTTCTTTTTCTTCGTCTTCTCTCCCTTGCTCAAGTTCT
TCTCGCTCCTCTTTCTCTACTCCTTGAGGCTCTTGTTGTTGTCCTCCGGA
ATCATCTTCTATGGCCACGTTTTGAGGGTCTTCTTCCTGGATTGTTTCAG
GCAGCGATTGAACCTCTTGAAGCTGCGGAACAAGGGTTTCAACGGGTGCG
GGTTCAGAGGATCGCTGCTTTCGTTTCTTCGCCATATCTCAGAAAGAGAA
GAGGGAGAAAGAGATTTCAATTCAAGGTTTTATTGAAAGACCGAGACCTA
GGGTTTCAGTAAGATAACGTCGTGTCGTGTCGTGTCGTGTCGTCTCTCCT
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mRNA from alignment at Chromosome01:293773..295372-

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G001600.1.v6.1 ID=Manes.01G001600.1.v6.1|Name=Manes.01G001600.1|organism=Manihot esculenta|type=mRNA|length=1600bp|location=Sequence derived from alignment at Chromosome01:293773..295372- (Manihot esculenta)
AGGAGAGACGACACGACACGACACGACACGACGTTATCTTACTGAAACCC TAGGTCTCGGTCTTTCAATAAAACCTTGAATTGAAATCTCTTTCTCCCTC TTCTCTTTCTGAGATATGGCGAAGAAACGAAAGCAGCGATCCTCTGAACC CGCACCCGTTGAAACCCTTGTTCCGCAGCTTCAAGAGGTTCAATCGCTGC CTGAAACAATCCAGGAAGAAGACCCTCAAAACGTGGCCATAGAAGATGAT TCCGGAGGACAACAACAAGAGCCTCAAGGAGTAGAGAAAGAGGAGCGAGA AGAACTTGAGCAAGGGAGAGAAGACGAAGAAAAAGAACCAGAAGAAGAAG ACGAAGAAGGAGGAGAAGGAGAAGATAAACAACCGGAAGAACATCACTCT CATAACCTAGAAGTCTCATCAAGTGATGTAGCACAGTCAAACCCAGAAAT AGCTGAAGCCAATAGTGCTAATGAAGGTGCTAGTAATGGAAACGAAGCAA CTGAGGAAGAGGAAAATGAAGACGACGACTCTCTAGAGAAGCTTCTAGAG CCTTTCGGGAAAGACCAACTGGTTGCCCTCCTCAGAAAGTCCGTGGACAA GCATCCTGATTTGATGGATTCTGTGCGTGAAATTGCGGATGCTGACCCCG CTCACCGCAAGATCTTTGTGCACGGTCTCGGCTGGGATACCACTGCTGAA ACCCTCAAATCTGAGTTTGGGAAGTACGGGGAGATAGAGGACTGTAAGGC CGTGACCGACCGTGTTTCAGGGAAATCTAAAGGCTATGCCTTTATATTAT TCAAGCAGCGAGCTGGGGCACGAAAAGCCCTCAGGCAGCCCCAGAAAAAG ATAGGTAATAGGATTACGTCCTGTCAGTTGGCCACTGCAGGGCCTGTACC AGCTCCACCCCCAACTACGTCAGCAGTGTCCGAGTACACTCAGAGGAAGA TTTTCGTAAGCAATGTATCAGCTGAGATAGATCCTGAGAAGCTTCTGGAG TTCTTTAGGCAGTACGGGGAGATTGAGGAAGGTCCACTTGGGCTTGATAA GCAGACCGGAAAACCCAAGGGGTTTGCATTATTCGTGTATAAGTCAGTTG AGAGTGCAAAGAAGGCACTTGAGGAGCCTCACAAGAAGTTTGAGGGTCAT ACGCTGCATTGCCAGAAGGCCATAGATGGGCAAAAATCAAACAAGACGGG TTATGGTGCAGTTCACCATCAGCATCACCATCATCAGCCACATTACCAGC ACACAGCCAAGAAAGGTAAGTACTCGTCTGGTGCACACGGCCCTGGTCAT TTGATGGCACCGTCTGGGCCATCTGTGAACTTCAGTCCGGGAATGGCACC CCAAGGTTTGAACCCGGCGCTTGGGCAGGCCTTAACGGCTTTGGGGCTTG GTAATCTGCTTGGAGGGCTTGGTGGTGCACCAGTGAATATGGGGGGGCCG CCTGCTGGATACGGTAATCAGGCTGGTGGGGGATACGCGATTGAACCAGG TATGCAGGGTGGATATCCGAACCTACAGATGAACCCTCATATGGGACAGA GCGGTGCTGGCAGAGCTCAACAAGGCAGTGCTCCTTACATGGGACATTAG
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Coding sequence (CDS) from alignment at Chromosome01:293773..295372-

>Manes.01G001600.1.v6.1 ID=Manes.01G001600.1.v6.1|Name=Manes.01G001600.1|organism=Manihot esculenta|type=CDS|length=1485bp|location=Sequence derived from alignment at Chromosome01:293773..295372- (Manihot esculenta)
ATGGCGAAGAAACGAAAGCAGCGATCCTCTGAACCCGCACCCGTTGAAAC
CCTTGTTCCGCAGCTTCAAGAGGTTCAATCGCTGCCTGAAACAATCCAGG
AAGAAGACCCTCAAAACGTGGCCATAGAAGATGATTCCGGAGGACAACAA
CAAGAGCCTCAAGGAGTAGAGAAAGAGGAGCGAGAAGAACTTGAGCAAGG
GAGAGAAGACGAAGAAAAAGAACCAGAAGAAGAAGACGAAGAAGGAGGAG
AAGGAGAAGATAAACAACCGGAAGAACATCACTCTCATAACCTAGAAGTC
TCATCAAGTGATGTAGCACAGTCAAACCCAGAAATAGCTGAAGCCAATAG
TGCTAATGAAGGTGCTAGTAATGGAAACGAAGCAACTGAGGAAGAGGAAA
ATGAAGACGACGACTCTCTAGAGAAGCTTCTAGAGCCTTTCGGGAAAGAC
CAACTGGTTGCCCTCCTCAGAAAGTCCGTGGACAAGCATCCTGATTTGAT
GGATTCTGTGCGTGAAATTGCGGATGCTGACCCCGCTCACCGCAAGATCT
TTGTGCACGGTCTCGGCTGGGATACCACTGCTGAAACCCTCAAATCTGAG
TTTGGGAAGTACGGGGAGATAGAGGACTGTAAGGCCGTGACCGACCGTGT
TTCAGGGAAATCTAAAGGCTATGCCTTTATATTATTCAAGCAGCGAGCTG
GGGCACGAAAAGCCCTCAGGCAGCCCCAGAAAAAGATAGGTAATAGGATT
ACGTCCTGTCAGTTGGCCACTGCAGGGCCTGTACCAGCTCCACCCCCAAC
TACGTCAGCAGTGTCCGAGTACACTCAGAGGAAGATTTTCGTAAGCAATG
TATCAGCTGAGATAGATCCTGAGAAGCTTCTGGAGTTCTTTAGGCAGTAC
GGGGAGATTGAGGAAGGTCCACTTGGGCTTGATAAGCAGACCGGAAAACC
CAAGGGGTTTGCATTATTCGTGTATAAGTCAGTTGAGAGTGCAAAGAAGG
CACTTGAGGAGCCTCACAAGAAGTTTGAGGGTCATACGCTGCATTGCCAG
AAGGCCATAGATGGGCAAAAATCAAACAAGACGGGTTATGGTGCAGTTCA
CCATCAGCATCACCATCATCAGCCACATTACCAGCACACAGCCAAGAAAG
GTAAGTACTCGTCTGGTGCACACGGCCCTGGTCATTTGATGGCACCGTCT
GGGCCATCTGTGAACTTCAGTCCGGGAATGGCACCCCAAGGTTTGAACCC
GGCGCTTGGGCAGGCCTTAACGGCTTTGGGGCTTGGTAATCTGCTTGGAG
GGCTTGGTGGTGCACCAGTGAATATGGGGGGGCCGCCTGCTGGATACGGT
AATCAGGCTGGTGGGGGATACGCGATTGAACCAGGTATGCAGGGTGGATA
TCCGAACCTACAGATGAACCCTCATATGGGACAGAGCGGTGCTGGCAGAG
CTCAACAAGGCAGTGCTCCTTACATGGGACATTAG
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