Manes.01G001400.1.v6.1 (mRNA)

Overview


Name	Manes.01G001400.1
Unique Name	Manes.01G001400.1.v6.1
Type	mRNA
Organism	Manihot esculenta (Cassava)
Sequence length	2974

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chromosome01	chromosome	Chromosome01:259425..262398 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)	2015-07-22

Properties


Property Name	Value
Pacid	32359990
Longest	1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Manes.01G001400	Manes.01G001400.v6.1	Manihot esculenta	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G001400.1	Manes.01G001400.1.v6.1-protein	Manihot esculenta	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G001400.1.v6.1.CDS.4	Manes.01G001400.1.v6.1.CDS.4	Manihot esculenta	CDS
Manes.01G001400.1.v6.1.CDS.3	Manes.01G001400.1.v6.1.CDS.3	Manihot esculenta	CDS
Manes.01G001400.1.v6.1.CDS.2	Manes.01G001400.1.v6.1.CDS.2	Manihot esculenta	CDS
Manes.01G001400.1.v6.1.CDS.1	Manes.01G001400.1.v6.1.CDS.1	Manihot esculenta	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G001400.1.v6.1.three_prime_UTR.1	Manes.01G001400.1.v6.1.three_prime_UTR.1	Manihot esculenta	three_prime_UTR

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Manes.01G001400.1.v6.1.five_prime_UTR.1	Manes.01G001400.1.v6.1.five_prime_UTR.1	Manihot esculenta	five_prime_UTR

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA from alignment at Chromosome01:259425..262398-
coding sequnece from alignment at Chromosome01:259425..262398-

mRNA sequence

>Manes.01G001400.1.v6.1 ID=Manes.01G001400.1.v6.1|Name=Manes.01G001400.1|organism=Manihot esculenta|type=mRNA|length=2974bp
ACAAGAACAGTAATAAACACAAACCACGCCATATATAGAAATATCAGTAG
CATTGCACACAAGAAGCAACAAAGAAAGCTAGCTAGCTAGCATTACAAAA
CAAAACACAAAAGCCAAACAATCATCTCCCATAGATTGACTTGAGAGATG
ATAAGCATTGATTGTTTTGCAGCATTATTTAACCACACTGTAGGTGTGGA
CTTATAGTCCTGTCACCTTTATTTCCACGACATTTCATTCAAATAACATG
TCCCACACCATTTGTCTTTCAAAAGAAACAATTCATACACGGTGATAATT
GCACATTGATAGTATACAGACCCATTCATCTAGCGACGGAAGCTTCTGAC
TTGGCGGGGTGGATCGGCTTCGTCGTCTCGGAGCTTCACAAGAGTGTAAG
TACCTGCACCAGCAACAGCCCCAAGTGTGGGTGCCACCAAGTATATCCAC
AAATCCCTGTAATTTCCTGCGGCTACCGCTGGCCCCAGAGTCCTCACAGG
ATTCATTGAACCTCCGCTAGATGGCCTGCCACGAAGAAAGTTGAAAATTT
GCAATTATTAAAATGCTTTTCTAATGGAATCTTCGTTGGTCGCACCTTTC
GGGAGCCACAATCCCTCTGTCAAGACCGTCTTGTCACGTTTTCATATATA
ACCAAACTAGCCATTTGTCACCACTGACTAGACTACTCAAACTATTTCCC
TGACTTGTCTCAAACACATTATTATTCCTATATTTATCATATATTTTATG
AATTACATTTATAAATAAATAAAAATAATTAAAACTAATTCAAGTTTTAA
TTTTTCAAAATTATACTCTTGCCATTGGCAAGGAATAAATAAAGGAAATA
GGCATGGATTATTACTCACCCAGCTACTAGAATGTTGAGCATAACAGTTG
CTCCAACTGCTATTCCTGCCAACTCGCCTACCTGATAATAGAGTGAGAGA
ATTTAGATCAAAAAACAAATAAAAATGGAGAAAATATATATTTTAGAGGA
AAGAAATGGAGGCTAAAATTAGAAAGGAAATGAAAGAAAACTTACAGCTC
GGGTATCAGTTGCAACAGCGGTGACGACAAACAAGAGATTGAAAGTAATG
AGAAACTCAAGTGCAAAAGCCTGTCCAACGCCAACGGAAGGAACAGTTAC
GCCACCAGACATGAAAGGATGGAAGACACCTTTAAGAGCAAAAGAAGCAC
AAATGGAGGCAGAAACTTGGGCAGCTATATAGGCAGGGACTTGCATCCAA
GGAAAGTGACGGAGAGATGCAAAGGCGATGGTCAAGGATGGATTCAAGTG
AGCTCCTGATATGTGTCCAGTTGATAAAATTATTATCATCACGGCTAGCC
CAGCACATGCTGCATTCCCAATCAATGACTCTGCTCCGTTATACTTTTGG
TTCACTATCGGTCCTGCTGTTGCTGCAAATATCAGGATGAAGGTTCCCAC
GAATTCTGCTCCAAGCTTCAATACAATTCCATTTTCCCATATTATTAGAT
TTTTTAAAATTATAGAAATTAAATAATAAAATAATTAATGAAAAGATTAA
TTAATAATTTTTTTAAAATTATAAAATTAATTATTAAATTTTTCGTATTA
TAAAAATTAAATAATATTTTTTTAAAAAAAAATATTGAACCCATCCAAAA
ATATATCAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
TATATATATATATATATATATATATATTTAAAGTCAACCTTAAGGAGTGT
TTCTCCGACTTTGTCAAAATAAATAAAAAGTGTTGTGTCCAAGTGACATG
AATTTACTATCATCACTGAGTAAAGCTAAATCAGTGAGCGCTTATGAGTT
AAAACTGCAATATTTTATTAATTTAATTTAAATTTAAATATGTGATTTAT
TATAATTTATTTATTTATTCAGAAAATGTACAAAAATTTCCCCATTGGTT
ACTCTAGTTATGTATATAAAGGCTGCGGAATTTAAAAAATAAAAAAATAA
AACAATATTCTAATGTGAAAAAATTAACAAAGTGAGAGAGAAGGAAGAGA
AGAGATACCTTGCGGGTAAGAGAGACATCCGGTGAAGGGAAATCAGTGAA
GCACGTGTGGGGTTGACCCCAAGTTGGAGCATTAACTGGCAAGCACTTGC
ATCTCGGCATTGACTTTCGATCATAGGATAGTGAATCTATCCTCAGTGAA
GGAAACAGCGGCCCTCCCGGCGTCCCTGGCGTCGCCGGCGCCGAAGCTGT
TGGTGTCCCTGTCTCGTTTTCCGGCATTTGCTCTCTCTCTCTCTCTCTCT
CTTTTTTCTATACTTTAATATCTAATTCAAGCAAAAAAATTTTTTTTTTT
GAAATTTTAGATGATAGCTGGGAATGGGACGATGTTACATGATTTGACGT
TTTTTTAACGGTTTACCTACACGGTGATCTTGTTCTTATCCAGACCGCTA
ACGGTTAGGATTTACTAGAAATTT

mRNA from alignment at Chromosome01:259425..262398-

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Manes.01G001400.1.v6.1 ID=Manes.01G001400.1.v6.1|Name=Manes.01G001400.1|organism=Manihot esculenta|type=mRNA|length=2974bp|location=Sequence derived from alignment at Chromosome01:259425..262398- (Manihot esculenta)
AAATTTCTAGTAAATCCTAACCGTTAGCGGTCTGGATAAGAACAAGATCA
CCGTGTAGGTAAACCGTTAAAAAAACGTCAAATCATGTAACATCGTCCCA
TTCCCAGCTATCATCTAAAATTTCAAAAAAAAAAATTTTTTTGCTTGAAT
TAGATATTAAAGTATAGAAAAAAGAGAGAGAGAGAGAGAGAGAGCAAATG
CCGGAAAACGAGACAGGGACACCAACAGCTTCGGCGCCGGCGACGCCAGG
GACGCCGGGAGGGCCGCTGTTTCCTTCACTGAGGATAGATTCACTATCCT
ATGATCGAAAGTCAATGCCGAGATGCAAGTGCTTGCCAGTTAATGCTCCA
ACTTGGGGTCAACCCCACACGTGCTTCACTGATTTCCCTTCACCGGATGT
CTCTCTTACCCGCAAGGTATCTCTTCTCTTCCTTCTCTCTCACTTTGTTA
ATTTTTTCACATTAGAATATTGTTTTATTTTTTTATTTTTTAAATTCCGC
AGCCTTTATATACATAACTAGAGTAACCAATGGGGAAATTTTTGTACATT
TTCTGAATAAATAAATAAATTATAATAAATCACATATTTAAATTTAAATT
AAATTAATAAAATATTGCAGTTTTAACTCATAAGCGCTCACTGATTTAGC
TTTACTCAGTGATGATAGTAAATTCATGTCACTTGGACACAACACTTTTT
ATTTATTTTGACAAAGTCGGAGAAACACTCCTTAAGGTTGACTTTAAATA
TATATATATATATATATATATATATNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTGATTGATATATTTTTGGATGGGTTCAATATTTTTTTT
TAAAAAAATATTATTTAATTTTTATAATACGAAAAATTTAATAATTAATT
TTATAATTTTAAAAAAATTATTAATTAATCTTTTCATTAATTATTTTATT
ATTTAATTTCTATAATTTTAAAAAATCTAATAATATGGGAAAATGGAATT
GTATTGAAGCTTGGAGCAGAATTCGTGGGAACCTTCATCCTGATATTTGC
AGCAACAGCAGGACCGATAGTGAACCAAAAGTATAACGGAGCAGAGTCAT
TGATTGGGAATGCAGCATGTGCTGGGCTAGCCGTGATGATAATAATTTTA
TCAACTGGACACATATCAGGAGCTCACTTGAATCCATCCTTGACCATCGC
CTTTGCATCTCTCCGTCACTTTCCTTGGATGCAAGTCCCTGCCTATATAG
CTGCCCAAGTTTCTGCCTCCATTTGTGCTTCTTTTGCTCTTAAAGGTGTC
TTCCATCCTTTCATGTCTGGTGGCGTAACTGTTCCTTCCGTTGGCGTTGG
ACAGGCTTTTGCACTTGAGTTTCTCATTACTTTCAATCTCTTGTTTGTCG
TCACCGCTGTTGCAACTGATACCCGAGCTGTAAGTTTTCTTTCATTTCCT
TTCTAATTTTAGCCTCCATTTCTTTCCTCTAAAATATATATTTTCTCCAT
TTTTATTTGTTTTTTGATCTAAATTCTCTCACTCTATTATCAGGTAGGCG
AGTTGGCAGGAATAGCAGTTGGAGCAACTGTTATGCTCAACATTCTAGTA
GCTGGGTGAGTAATAATCCATGCCTATTTCCTTTATTTATTCCTTGCCAA
TGGCAAGAGTATAATTTTGAAAAATTAAAACTTGAATTAGTTTTAATTAT
TTTTATTTATTTATAAATGTAATTCATAAAATATATGATAAATATAGGAA
TAATAATGTGTTTGAGACAAGTCAGGGAAATAGTTTGAGTAGTCTAGTCA
GTGGTGACAAATGGCTAGTTTGGTTATATATGAAAACGTGACAAGACGGT
CTTGACAGAGGGATTGTGGCTCCCGAAAGGTGCGACCAACGAAGATTCCA
TTAGAAAAGCATTTTAATAATTGCAAATTTTCAACTTTCTTCGTGGCAGG
CCATCTAGCGGAGGTTCAATGAATCCTGTGAGGACTCTGGGGCCAGCGGT
AGCCGCAGGAAATTACAGGGATTTGTGGATATACTTGGTGGCACCCACAC
TTGGGGCTGTTGCTGGTGCAGGTACTTACACTCTTGTGAAGCTCCGAGAC
GACGAAGCCGATCCACCCCGCCAAGTCAGAAGCTTCCGTCGCTAGATGAA
TGGGTCTGTATACTATCAATGTGCAATTATCACCGTGTATGAATTGTTTC
TTTTGAAAGACAAATGGTGTGGGACATGTTATTTGAATGAAATGTCGTGG
AAATAAAGGTGACAGGACTATAAGTCCACACCTACAGTGTGGTTAAATAA
TGCTGCAAAACAATCAATGCTTATCATCTCTCAAGTCAATCTATGGGAGA
TGATTGTTTGGCTTTTGTGTTTTGTTTTGTAATGCTAGCTAGCTAGCTTT
CTTTGTTGCTTCTTGTGTGCAATGCTACTGATATTTCTATATATGGCGTG
GTTTGTGTTTATTACTGTTCTTGT

Coding sequence (CDS) from alignment at Chromosome01:259425..262398-

>Manes.01G001400.1.v6.1 ID=Manes.01G001400.1.v6.1|Name=Manes.01G001400.1|organism=Manihot esculenta|type=CDS|length=897bp|location=Sequence derived from alignment at Chromosome01:259425..262398- (Manihot esculenta)
ATGCCGGAAAACGAGACAGGGACACCAACAGCTTCGGCGCCGGCGACGCC
AGGGACGCCGGGAGGGCCGCTGTTTCCTTCACTGAGGATAGATTCACTAT
CCTATGATCGAAAGTCAATGCCGAGATGCAAGTGCTTGCCAGTTAATGCT
CCAACTTGGGGTCAACCCCACACGTGCTTCACTGATTTCCCTTCACCGGA
TGTCTCTCTTACCCGCAAGCTTGGAGCAGAATTCGTGGGAACCTTCATCC
TGATATTTGCAGCAACAGCAGGACCGATAGTGAACCAAAAGTATAACGGA
GCAGAGTCATTGATTGGGAATGCAGCATGTGCTGGGCTAGCCGTGATGAT
AATAATTTTATCAACTGGACACATATCAGGAGCTCACTTGAATCCATCCT
TGACCATCGCCTTTGCATCTCTCCGTCACTTTCCTTGGATGCAAGTCCCT
GCCTATATAGCTGCCCAAGTTTCTGCCTCCATTTGTGCTTCTTTTGCTCT
TAAAGGTGTCTTCCATCCTTTCATGTCTGGTGGCGTAACTGTTCCTTCCG
TTGGCGTTGGACAGGCTTTTGCACTTGAGTTTCTCATTACTTTCAATCTC
TTGTTTGTCGTCACCGCTGTTGCAACTGATACCCGAGCTGTAGGCGAGTT
GGCAGGAATAGCAGTTGGAGCAACTGTTATGCTCAACATTCTAGTAGCTG
GGCCATCTAGCGGAGGTTCAATGAATCCTGTGAGGACTCTGGGGCCAGCG
GTAGCCGCAGGAAATTACAGGGATTTGTGGATATACTTGGTGGCACCCAC
ACTTGGGGCTGTTGCTGGTGCAGGTACTTACACTCTTGTGAAGCTCCGAG
ACGACGAAGCCGATCCACCCCGCCAAGTCAGAAGCTTCCGTCGCTAG