Manes.01G001400.1.v6.1 (mRNA)

Overview
NameManes.01G001400.1
Unique NameManes.01G001400.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length2974
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:259425..262398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32359990
Longest1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G001400Manes.01G001400.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G001400.1Manes.01G001400.1.v6.1-proteinManihot esculentapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G001400.1.v6.1.CDS.4Manes.01G001400.1.v6.1.CDS.4Manihot esculentaCDS
Manes.01G001400.1.v6.1.CDS.3Manes.01G001400.1.v6.1.CDS.3Manihot esculentaCDS
Manes.01G001400.1.v6.1.CDS.2Manes.01G001400.1.v6.1.CDS.2Manihot esculentaCDS
Manes.01G001400.1.v6.1.CDS.1Manes.01G001400.1.v6.1.CDS.1Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G001400.1.v6.1.three_prime_UTR.1Manes.01G001400.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G001400.1.v6.1.five_prime_UTR.1Manes.01G001400.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G001400.1.v6.1 ID=Manes.01G001400.1.v6.1|Name=Manes.01G001400.1|organism=Manihot esculenta|type=mRNA|length=2974bp
ACAAGAACAGTAATAAACACAAACCACGCCATATATAGAAATATCAGTAG
CATTGCACACAAGAAGCAACAAAGAAAGCTAGCTAGCTAGCATTACAAAA
CAAAACACAAAAGCCAAACAATCATCTCCCATAGATTGACTTGAGAGATG
ATAAGCATTGATTGTTTTGCAGCATTATTTAACCACACTGTAGGTGTGGA
CTTATAGTCCTGTCACCTTTATTTCCACGACATTTCATTCAAATAACATG
TCCCACACCATTTGTCTTTCAAAAGAAACAATTCATACACGGTGATAATT
GCACATTGATAGTATACAGACCCATTCATCTAGCGACGGAAGCTTCTGAC
TTGGCGGGGTGGATCGGCTTCGTCGTCTCGGAGCTTCACAAGAGTGTAAG
TACCTGCACCAGCAACAGCCCCAAGTGTGGGTGCCACCAAGTATATCCAC
AAATCCCTGTAATTTCCTGCGGCTACCGCTGGCCCCAGAGTCCTCACAGG
ATTCATTGAACCTCCGCTAGATGGCCTGCCACGAAGAAAGTTGAAAATTT
GCAATTATTAAAATGCTTTTCTAATGGAATCTTCGTTGGTCGCACCTTTC
GGGAGCCACAATCCCTCTGTCAAGACCGTCTTGTCACGTTTTCATATATA
ACCAAACTAGCCATTTGTCACCACTGACTAGACTACTCAAACTATTTCCC
TGACTTGTCTCAAACACATTATTATTCCTATATTTATCATATATTTTATG
AATTACATTTATAAATAAATAAAAATAATTAAAACTAATTCAAGTTTTAA
TTTTTCAAAATTATACTCTTGCCATTGGCAAGGAATAAATAAAGGAAATA
GGCATGGATTATTACTCACCCAGCTACTAGAATGTTGAGCATAACAGTTG
CTCCAACTGCTATTCCTGCCAACTCGCCTACCTGATAATAGAGTGAGAGA
ATTTAGATCAAAAAACAAATAAAAATGGAGAAAATATATATTTTAGAGGA
AAGAAATGGAGGCTAAAATTAGAAAGGAAATGAAAGAAAACTTACAGCTC
GGGTATCAGTTGCAACAGCGGTGACGACAAACAAGAGATTGAAAGTAATG
AGAAACTCAAGTGCAAAAGCCTGTCCAACGCCAACGGAAGGAACAGTTAC
GCCACCAGACATGAAAGGATGGAAGACACCTTTAAGAGCAAAAGAAGCAC
AAATGGAGGCAGAAACTTGGGCAGCTATATAGGCAGGGACTTGCATCCAA
GGAAAGTGACGGAGAGATGCAAAGGCGATGGTCAAGGATGGATTCAAGTG
AGCTCCTGATATGTGTCCAGTTGATAAAATTATTATCATCACGGCTAGCC
CAGCACATGCTGCATTCCCAATCAATGACTCTGCTCCGTTATACTTTTGG
TTCACTATCGGTCCTGCTGTTGCTGCAAATATCAGGATGAAGGTTCCCAC
GAATTCTGCTCCAAGCTTCAATACAATTCCATTTTCCCATATTATTAGAT
TTTTTAAAATTATAGAAATTAAATAATAAAATAATTAATGAAAAGATTAA
TTAATAATTTTTTTAAAATTATAAAATTAATTATTAAATTTTTCGTATTA
TAAAAATTAAATAATATTTTTTTAAAAAAAAATATTGAACCCATCCAAAA
ATATATCAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
TATATATATATATATATATATATATATTTAAAGTCAACCTTAAGGAGTGT
TTCTCCGACTTTGTCAAAATAAATAAAAAGTGTTGTGTCCAAGTGACATG
AATTTACTATCATCACTGAGTAAAGCTAAATCAGTGAGCGCTTATGAGTT
AAAACTGCAATATTTTATTAATTTAATTTAAATTTAAATATGTGATTTAT
TATAATTTATTTATTTATTCAGAAAATGTACAAAAATTTCCCCATTGGTT
ACTCTAGTTATGTATATAAAGGCTGCGGAATTTAAAAAATAAAAAAATAA
AACAATATTCTAATGTGAAAAAATTAACAAAGTGAGAGAGAAGGAAGAGA
AGAGATACCTTGCGGGTAAGAGAGACATCCGGTGAAGGGAAATCAGTGAA
GCACGTGTGGGGTTGACCCCAAGTTGGAGCATTAACTGGCAAGCACTTGC
ATCTCGGCATTGACTTTCGATCATAGGATAGTGAATCTATCCTCAGTGAA
GGAAACAGCGGCCCTCCCGGCGTCCCTGGCGTCGCCGGCGCCGAAGCTGT
TGGTGTCCCTGTCTCGTTTTCCGGCATTTGCTCTCTCTCTCTCTCTCTCT
CTTTTTTCTATACTTTAATATCTAATTCAAGCAAAAAAATTTTTTTTTTT
GAAATTTTAGATGATAGCTGGGAATGGGACGATGTTACATGATTTGACGT
TTTTTTAACGGTTTACCTACACGGTGATCTTGTTCTTATCCAGACCGCTA
ACGGTTAGGATTTACTAGAAATTT
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mRNA from alignment at Chromosome01:259425..262398-

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G001400.1.v6.1 ID=Manes.01G001400.1.v6.1|Name=Manes.01G001400.1|organism=Manihot esculenta|type=mRNA|length=2974bp|location=Sequence derived from alignment at Chromosome01:259425..262398- (Manihot esculenta)
AAATTTCTAGTAAATCCTAACCGTTAGCGGTCTGGATAAGAACAAGATCA CCGTGTAGGTAAACCGTTAAAAAAACGTCAAATCATGTAACATCGTCCCA TTCCCAGCTATCATCTAAAATTTCAAAAAAAAAAATTTTTTTGCTTGAAT TAGATATTAAAGTATAGAAAAAAGAGAGAGAGAGAGAGAGAGAGCAAATG CCGGAAAACGAGACAGGGACACCAACAGCTTCGGCGCCGGCGACGCCAGG GACGCCGGGAGGGCCGCTGTTTCCTTCACTGAGGATAGATTCACTATCCT ATGATCGAAAGTCAATGCCGAGATGCAAGTGCTTGCCAGTTAATGCTCCA ACTTGGGGTCAACCCCACACGTGCTTCACTGATTTCCCTTCACCGGATGT CTCTCTTACCCGCAAGGTATCTCTTCTCTTCCTTCTCTCTCACTTTGTTA ATTTTTTCACATTAGAATATTGTTTTATTTTTTTATTTTTTAAATTCCGC AGCCTTTATATACATAACTAGAGTAACCAATGGGGAAATTTTTGTACATT TTCTGAATAAATAAATAAATTATAATAAATCACATATTTAAATTTAAATT AAATTAATAAAATATTGCAGTTTTAACTCATAAGCGCTCACTGATTTAGC TTTACTCAGTGATGATAGTAAATTCATGTCACTTGGACACAACACTTTTT ATTTATTTTGACAAAGTCGGAGAAACACTCCTTAAGGTTGACTTTAAATA TATATATATATATATATATATATATNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNTGATTGATATATTTTTGGATGGGTTCAATATTTTTTTT TAAAAAAATATTATTTAATTTTTATAATACGAAAAATTTAATAATTAATT TTATAATTTTAAAAAAATTATTAATTAATCTTTTCATTAATTATTTTATT ATTTAATTTCTATAATTTTAAAAAATCTAATAATATGGGAAAATGGAATT GTATTGAAGCTTGGAGCAGAATTCGTGGGAACCTTCATCCTGATATTTGC AGCAACAGCAGGACCGATAGTGAACCAAAAGTATAACGGAGCAGAGTCAT TGATTGGGAATGCAGCATGTGCTGGGCTAGCCGTGATGATAATAATTTTA TCAACTGGACACATATCAGGAGCTCACTTGAATCCATCCTTGACCATCGC CTTTGCATCTCTCCGTCACTTTCCTTGGATGCAAGTCCCTGCCTATATAG CTGCCCAAGTTTCTGCCTCCATTTGTGCTTCTTTTGCTCTTAAAGGTGTC TTCCATCCTTTCATGTCTGGTGGCGTAACTGTTCCTTCCGTTGGCGTTGG ACAGGCTTTTGCACTTGAGTTTCTCATTACTTTCAATCTCTTGTTTGTCG TCACCGCTGTTGCAACTGATACCCGAGCTGTAAGTTTTCTTTCATTTCCT TTCTAATTTTAGCCTCCATTTCTTTCCTCTAAAATATATATTTTCTCCAT TTTTATTTGTTTTTTGATCTAAATTCTCTCACTCTATTATCAGGTAGGCG AGTTGGCAGGAATAGCAGTTGGAGCAACTGTTATGCTCAACATTCTAGTA GCTGGGTGAGTAATAATCCATGCCTATTTCCTTTATTTATTCCTTGCCAA TGGCAAGAGTATAATTTTGAAAAATTAAAACTTGAATTAGTTTTAATTAT TTTTATTTATTTATAAATGTAATTCATAAAATATATGATAAATATAGGAA TAATAATGTGTTTGAGACAAGTCAGGGAAATAGTTTGAGTAGTCTAGTCA GTGGTGACAAATGGCTAGTTTGGTTATATATGAAAACGTGACAAGACGGT CTTGACAGAGGGATTGTGGCTCCCGAAAGGTGCGACCAACGAAGATTCCA TTAGAAAAGCATTTTAATAATTGCAAATTTTCAACTTTCTTCGTGGCAGG CCATCTAGCGGAGGTTCAATGAATCCTGTGAGGACTCTGGGGCCAGCGGT AGCCGCAGGAAATTACAGGGATTTGTGGATATACTTGGTGGCACCCACAC TTGGGGCTGTTGCTGGTGCAGGTACTTACACTCTTGTGAAGCTCCGAGAC GACGAAGCCGATCCACCCCGCCAAGTCAGAAGCTTCCGTCGCTAGATGAA TGGGTCTGTATACTATCAATGTGCAATTATCACCGTGTATGAATTGTTTC TTTTGAAAGACAAATGGTGTGGGACATGTTATTTGAATGAAATGTCGTGG AAATAAAGGTGACAGGACTATAAGTCCACACCTACAGTGTGGTTAAATAA TGCTGCAAAACAATCAATGCTTATCATCTCTCAAGTCAATCTATGGGAGA TGATTGTTTGGCTTTTGTGTTTTGTTTTGTAATGCTAGCTAGCTAGCTTT CTTTGTTGCTTCTTGTGTGCAATGCTACTGATATTTCTATATATGGCGTG GTTTGTGTTTATTACTGTTCTTGT
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Coding sequence (CDS) from alignment at Chromosome01:259425..262398-

>Manes.01G001400.1.v6.1 ID=Manes.01G001400.1.v6.1|Name=Manes.01G001400.1|organism=Manihot esculenta|type=CDS|length=897bp|location=Sequence derived from alignment at Chromosome01:259425..262398- (Manihot esculenta)
ATGCCGGAAAACGAGACAGGGACACCAACAGCTTCGGCGCCGGCGACGCC
AGGGACGCCGGGAGGGCCGCTGTTTCCTTCACTGAGGATAGATTCACTAT
CCTATGATCGAAAGTCAATGCCGAGATGCAAGTGCTTGCCAGTTAATGCT
CCAACTTGGGGTCAACCCCACACGTGCTTCACTGATTTCCCTTCACCGGA
TGTCTCTCTTACCCGCAAGCTTGGAGCAGAATTCGTGGGAACCTTCATCC
TGATATTTGCAGCAACAGCAGGACCGATAGTGAACCAAAAGTATAACGGA
GCAGAGTCATTGATTGGGAATGCAGCATGTGCTGGGCTAGCCGTGATGAT
AATAATTTTATCAACTGGACACATATCAGGAGCTCACTTGAATCCATCCT
TGACCATCGCCTTTGCATCTCTCCGTCACTTTCCTTGGATGCAAGTCCCT
GCCTATATAGCTGCCCAAGTTTCTGCCTCCATTTGTGCTTCTTTTGCTCT
TAAAGGTGTCTTCCATCCTTTCATGTCTGGTGGCGTAACTGTTCCTTCCG
TTGGCGTTGGACAGGCTTTTGCACTTGAGTTTCTCATTACTTTCAATCTC
TTGTTTGTCGTCACCGCTGTTGCAACTGATACCCGAGCTGTAGGCGAGTT
GGCAGGAATAGCAGTTGGAGCAACTGTTATGCTCAACATTCTAGTAGCTG
GGCCATCTAGCGGAGGTTCAATGAATCCTGTGAGGACTCTGGGGCCAGCG
GTAGCCGCAGGAAATTACAGGGATTTGTGGATATACTTGGTGGCACCCAC
ACTTGGGGCTGTTGCTGGTGCAGGTACTTACACTCTTGTGAAGCTCCGAG
ACGACGAAGCCGATCCACCCCGCCAAGTCAGAAGCTTCCGTCGCTAG
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