Manes.01G001200.1.v6.1 (mRNA)

Overview
NameManes.01G001200.1
Unique NameManes.01G001200.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length2645
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:252121..254765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32357848
Longest1
AncestorIdentifiercassava4.1_009948m.v4.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G001200Manes.01G001200.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G001200.1Manes.01G001200.1.v6.1-proteinManihot esculentapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G001200.1.v6.1.five_prime_UTR.1Manes.01G001200.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G001200.1.v6.1.CDS.1Manes.01G001200.1.v6.1.CDS.1Manihot esculentaCDS
Manes.01G001200.1.v6.1.CDS.2Manes.01G001200.1.v6.1.CDS.2Manihot esculentaCDS
Manes.01G001200.1.v6.1.CDS.3Manes.01G001200.1.v6.1.CDS.3Manihot esculentaCDS
Manes.01G001200.1.v6.1.CDS.4Manes.01G001200.1.v6.1.CDS.4Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G001200.1.v6.1.three_prime_UTR.1Manes.01G001200.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G001200.1.v6.1 ID=Manes.01G001200.1.v6.1|Name=Manes.01G001200.1|organism=Manihot esculenta|type=mRNA|length=2645bp
GCTTTCCTCTCCTTTATATTCTTAATATAATAAAACCCACCACCTCTTAT
CTTTCTACCTCCAACAATAACAAGAAAATTAGGAAAACTGGCATGGCCTC
TTCTCTTGTTCTCTCCAATCTGTTCTCTTCTTCCTTACCTCGCCCTCCCA
ATAACCTAATAAAACCTCGCTGCCCCATCATAATTCCCTCGCTCCAATTC
CAAAATCTCACAAATTCAAAATTTTTTGGACCCACACATCGCTTTCCCTC
AAATTCTTTCTCATTTTCCTGGAAAACTTCGTCCCTTAGTTGCCTTAGAT
CAGATGGGAATACAAGCAGCCCTGTCTCTGAAGAGGCGCTTGTGGGAGAG
GACTCAGCAGCGTTTGAGTTGGGCAAACAGAAGATACTATCTTGGATATA
TTTCAGTGTGATATTGGGAGTTGTTTTATATGTTCTTGATGTGGTTTGGA
TTGATAACTCTACGGGATATGGAAAGCTTTTCATTGATGCTATTTCAAAT
CTTTCAGAGAGTCATGAAGTAAGTTAACTGATTTATTTGTTTACTTAGTC
CAGAACTCAAGAGTATCCATAGATTTTGAGGAGATTTATGTTGAGATAAG
TTAAAAAGAAAACAAGATATATTTTCTGCATACAATCTATCCAGCTTTAA
TTTTAATTTCATACAGAAGATTGATTATAAAGAAGAGTAATTTTATCTAC
GTGGTTGGTTTGTTCTTTGAGACTTGTGGAACAAATTGAATTGCATTATC
ACAATTTGAAAAACAATCTTTCGCAGGCTGTAATGTTGATACTGATTTTC
ATTTTCGCCACTGTTCACAGTGGCTTGGCTAGTCTCCGTGATGTGGGTGA
GCAACTCATTGGTGAACGACCATATCGGGTTTTGTTTGCTGGGGTTTCTC
TTCCATTAGCTCTTAGCACTGTAGTAAGCAATTCCCAGCCTTTAGATAGT
ATAGATTTTAGTTTTCTTATTTAAAAAAATTAATTTAATTTTTGTTTTTA
AATTCCCTTCTTCAGGTGTACTTTATCAATCATAGATATGATGGAGTTCA
GTTATGGCAGCTTCAGAGTGATGTATTAGTACATCAACTTGTGTGGCTTT
CTAATTTTATCTCTTTCTTTTTTCTCTATCCTTCAACGTTTAATCTGTTA
GAAGTAGCAGCTGTTGACAAGCCTAAAATGCATCTTTGGGAAACTGGGAT
AATGAGGATCACAAGGCACCCTCAGGTTGGGTATTTTCTTTACTTGTTCC
TTTGCATTTACACAAATCTTTTGTTTCTTAGTACATCCAACTTGTTTTCT
ATGAAGCTGAAAAATTTAGTAATTTTTATACTATATTTCAATCAATCCGT
GAATATGTGGACAACTCAACTCATCATACTGGTAACATGTGAGTTCTTTG
TGGCAACTATTAGATTAGATACTTTTGGCTGCCAGCATGTGGTTTTTTGG
CCTACACATGTAGAATGAATTTGCAAAATTTTCTCTGGGTTAGAAGACAT
ATTACTCCAAATTGAAAACCACCATATTATATTTTCTTTTGCAAATGTCT
TCATTTTTGTAATCCCAAAATTCCTTGGATAAAGCCTCATTGAGGTGCTG
CCAGAGTAGAACAGAATACTGTTGATTCTGTGTTCATAAAACAATCCCTG
TCATCTATGTCTCTGTTTAACGTGCACTCACACACTCATGAAGGCCAGTT
GTAGGCAAATCTACATACAGATATTTCTTTTCAGATGGTTGGACAGGTGA
TGTGGTGCTTGGCTCATACAATTTGGATTGGAAATTCTGTAGCTGTTGCT
GCATCTATTGGTCTAATTGGGCATCATTTATTTGGTGTGTGGAATGGAGA
CAGAAGATTAGCAAAGCGATATGGAGAGGCTTTTGAGGCTGTAAAGAAGC
GGACAAGTATAGTTCCATTTGCTGCAATAATTGATGGTCGTCAAAAGTTA
CCCAAAGATTATTATAAGGAATTCCTTCGGTTGCCATATTTTTCAATTAC
TGCATTGACTCTAGGTGCATACTTTGCTCACCCACTTATGCAGGCTGCCA
GCTCCAGACTTCATTGGTAAGCATTTCATCTTAGTTCCATCAAATTTACA
GTGGGTTGAAATTGCAAATGGTTAACTTAAAACAGATACAGATTTATTCT
CAAAAGGGAAAGATAATATCTTCTGTATACAATTCTTACTTTGTTGGGAA
TGTACATGAATGATGGATGATCTCACCCTCGAAGAACTGGAATCTAAATG
AATGAAAATGCCAAAAACCATAGAAGCCTTTTTAGCATGTGTAGGCAGAG
ATATTAAGAGGGAGTGTTTAGCTTGGAAAAGGGCACTGAACAATGTTATA
CAATTATGCTTACTTATGTGTTATTGAAATGAACAGTGATTTATGAATTT
TTCTAGCTGTAGATTTGAGTTTTGTTCAGTTTTCAGTGATTTGCAGAGTC
CTAGAACTCAAAAATCCGTTCATGGTTGTTGTAAACCTCTAGTTATAGAT
TTTTTTTCTTTTAATCAACGGTTGGATCAAATCTTCTCTGTGCTTCAGAA
GAAATGTGTACTTGAGAGGGCACTTTCACTCCAATGATCGTAGACCTAAT
GTGTAAGTTAGCTCTTGAACCATGTGAGAAAAGTAAAACCAGTCC
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mRNA from alignment at Chromosome01:252121..254765+

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G001200.1.v6.1 ID=Manes.01G001200.1.v6.1|Name=Manes.01G001200.1|organism=Manihot esculenta|type=mRNA|length=2645bp|location=Sequence derived from alignment at Chromosome01:252121..254765+ (Manihot esculenta)
GCTTTCCTCTCCTTTATATTCTTAATATAATAAAACCCACCACCTCTTAT CTTTCTACCTCCAACAATAACAAGAAAATTAGGAAAACTGGCATGGCCTC TTCTCTTGTTCTCTCCAATCTGTTCTCTTCTTCCTTACCTCGCCCTCCCA ATAACCTAATAAAACCTCGCTGCCCCATCATAATTCCCTCGCTCCAATTC CAAAATCTCACAAATTCAAAATTTTTTGGACCCACACATCGCTTTCCCTC AAATTCTTTCTCATTTTCCTGGAAAACTTCGTCCCTTAGTTGCCTTAGAT CAGATGGGAATACAAGCAGCCCTGTCTCTGAAGAGGCGCTTGTGGGAGAG GACTCAGCAGCGTTTGAGTTGGGCAAACAGAAGATACTATCTTGGATATA TTTCAGTGTGATATTGGGAGTTGTTTTATATGTTCTTGATGTGGTTTGGA TTGATAACTCTACGGGATATGGAAAGCTTTTCATTGATGCTATTTCAAAT CTTTCAGAGAGTCATGAAGTAAGTTAACTGATTTATTTGTTTACTTAGTC CAGAACTCAAGAGTATCCATAGATTTTGAGGAGATTTATGTTGAGATAAG TTAAAAAGAAAACAAGATATATTTTCTGCATACAATCTATCCAGCTTTAA TTTTAATTTCATACAGAAGATTGATTATAAAGAAGAGTAATTTTATCTAC GTGGTTGGTTTGTTCTTTGAGACTTGTGGAACAAATTGAATTGCATTATC ACAATTTGAAAAACAATCTTTCGCAGGCTGTAATGTTGATACTGATTTTC ATTTTCGCCACTGTTCACAGTGGCTTGGCTAGTCTCCGTGATGTGGGTGA GCAACTCATTGGTGAACGACCATATCGGGTTTTGTTTGCTGGGGTTTCTC TTCCATTAGCTCTTAGCACTGTAGTAAGCAATTCCCAGCCTTTAGATAGT ATAGATTTTAGTTTTCTTATTTAAAAAAATTAATTTAATTTTTGTTTTTA AATTCCCTTCTTCAGGTGTACTTTATCAATCATAGATATGATGGAGTTCA GTTATGGCAGCTTCAGAGTGATGTATTAGTACATCAACTTGTGTGGCTTT CTAATTTTATCTCTTTCTTTTTTCTCTATCCTTCAACGTTTAATCTGTTA GAAGTAGCAGCTGTTGACAAGCCTAAAATGCATCTTTGGGAAACTGGGAT AATGAGGATCACAAGGCACCCTCAGGTTGGGTATTTTCTTTACTTGTTCC TTTGCATTTACACAAATCTTTTGTTTCTTAGTACATCCAACTTGTTTTCT ATGAAGCTGAAAAATTTAGTAATTTTTATACTATATTTCAATCAATCCGT GAATATGTGGACAACTCAACTCATCATACTGGTAACATGTGAGTTCTTTG TGGCAACTATTAGATTAGATACTTTTGGCTGCCAGCATGTGGTTTTTTGG CCTACACATGTAGAATGAATTTGCAAAATTTTCTCTGGGTTAGAAGACAT ATTACTCCAAATTGAAAACCACCATATTATATTTTCTTTTGCAAATGTCT TCATTTTTGTAATCCCAAAATTCCTTGGATAAAGCCTCATTGAGGTGCTG CCAGAGTAGAACAGAATACTGTTGATTCTGTGTTCATAAAACAATCCCTG TCATCTATGTCTCTGTTTAACGTGCACTCACACACTCATGAAGGCCAGTT GTAGGCAAATCTACATACAGATATTTCTTTTCAGATGGTTGGACAGGTGA TGTGGTGCTTGGCTCATACAATTTGGATTGGAAATTCTGTAGCTGTTGCT GCATCTATTGGTCTAATTGGGCATCATTTATTTGGTGTGTGGAATGGAGA CAGAAGATTAGCAAAGCGATATGGAGAGGCTTTTGAGGCTGTAAAGAAGC GGACAAGTATAGTTCCATTTGCTGCAATAATTGATGGTCGTCAAAAGTTA CCCAAAGATTATTATAAGGAATTCCTTCGGTTGCCATATTTTTCAATTAC TGCATTGACTCTAGGTGCATACTTTGCTCACCCACTTATGCAGGCTGCCA GCTCCAGACTTCATTGGTAAGCATTTCATCTTAGTTCCATCAAATTTACA GTGGGTTGAAATTGCAAATGGTTAACTTAAAACAGATACAGATTTATTCT CAAAAGGGAAAGATAATATCTTCTGTATACAATTCTTACTTTGTTGGGAA TGTACATGAATGATGGATGATCTCACCCTCGAAGAACTGGAATCTAAATG AATGAAAATGCCAAAAACCATAGAAGCCTTTTTAGCATGTGTAGGCAGAG ATATTAAGAGGGAGTGTTTAGCTTGGAAAAGGGCACTGAACAATGTTATA CAATTATGCTTACTTATGTGTTATTGAAATGAACAGTGATTTATGAATTT TTCTAGCTGTAGATTTGAGTTTTGTTCAGTTTTCAGTGATTTGCAGAGTC CTAGAACTCAAAAATCCGTTCATGGTTGTTGTAAACCTCTAGTTATAGAT TTTTTTTCTTTTAATCAACGGTTGGATCAAATCTTCTCTGTGCTTCAGAA GAAATGTGTACTTGAGAGGGCACTTTCACTCCAATGATCGTAGACCTAAT GTGTAAGTTAGCTCTTGAACCATGTGAGAAAAGTAAAACCAGTCC
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Coding sequence (CDS) from alignment at Chromosome01:252121..254765+

>Manes.01G001200.1.v6.1 ID=Manes.01G001200.1.v6.1|Name=Manes.01G001200.1|organism=Manihot esculenta|type=CDS|length=1119bp|location=Sequence derived from alignment at Chromosome01:252121..254765+ (Manihot esculenta)
ATGGCCTCTTCTCTTGTTCTCTCCAATCTGTTCTCTTCTTCCTTACCTCG
CCCTCCCAATAACCTAATAAAACCTCGCTGCCCCATCATAATTCCCTCGC
TCCAATTCCAAAATCTCACAAATTCAAAATTTTTTGGACCCACACATCGC
TTTCCCTCAAATTCTTTCTCATTTTCCTGGAAAACTTCGTCCCTTAGTTG
CCTTAGATCAGATGGGAATACAAGCAGCCCTGTCTCTGAAGAGGCGCTTG
TGGGAGAGGACTCAGCAGCGTTTGAGTTGGGCAAACAGAAGATACTATCT
TGGATATATTTCAGTGTGATATTGGGAGTTGTTTTATATGTTCTTGATGT
GGTTTGGATTGATAACTCTACGGGATATGGAAAGCTTTTCATTGATGCTA
TTTCAAATCTTTCAGAGAGTCATGAAGCTGTAATGTTGATACTGATTTTC
ATTTTCGCCACTGTTCACAGTGGCTTGGCTAGTCTCCGTGATGTGGGTGA
GCAACTCATTGGTGAACGACCATATCGGGTTTTGTTTGCTGGGGTTTCTC
TTCCATTAGCTCTTAGCACTGTAGTGTACTTTATCAATCATAGATATGAT
GGAGTTCAGTTATGGCAGCTTCAGAGTGATGTATTAGTACATCAACTTGT
GTGGCTTTCTAATTTTATCTCTTTCTTTTTTCTCTATCCTTCAACGTTTA
ATCTGTTAGAAGTAGCAGCTGTTGACAAGCCTAAAATGCATCTTTGGGAA
ACTGGGATAATGAGGATCACAAGGCACCCTCAGATGGTTGGACAGGTGAT
GTGGTGCTTGGCTCATACAATTTGGATTGGAAATTCTGTAGCTGTTGCTG
CATCTATTGGTCTAATTGGGCATCATTTATTTGGTGTGTGGAATGGAGAC
AGAAGATTAGCAAAGCGATATGGAGAGGCTTTTGAGGCTGTAAAGAAGCG
GACAAGTATAGTTCCATTTGCTGCAATAATTGATGGTCGTCAAAAGTTAC
CCAAAGATTATTATAAGGAATTCCTTCGGTTGCCATATTTTTCAATTACT
GCATTGACTCTAGGTGCATACTTTGCTCACCCACTTATGCAGGCTGCCAG
CTCCAGACTTCATTGGTAA
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