Manes.01G000800.1.v6.1 (mRNA)

Overview
NameManes.01G000800.1
Unique NameManes.01G000800.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length2501
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:145363..147863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32358391
Longest1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G000800Manes.01G000800.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G000800.1Manes.01G000800.1.v6.1-proteinManihot esculentapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G000800.1.v6.1.CDS.2Manes.01G000800.1.v6.1.CDS.2Manihot esculentaCDS
Manes.01G000800.1.v6.1.CDS.1Manes.01G000800.1.v6.1.CDS.1Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G000800.1.v6.1.three_prime_UTR.1Manes.01G000800.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G000800.1.v6.1 ID=Manes.01G000800.1.v6.1|Name=Manes.01G000800.1|organism=Manihot esculenta|type=mRNA|length=2501bp
CAGCGTTTGACTTAAATCCACAGGGGCTGATGAACCAAAACTCTAGTGTT
GAACCACCATCACCCTGCATATGTCAAATTTTGTCAAGAAATACTCAAAA
CTCCAGTGTTGAACCACTGCAATAGAGTTTGGACCTTCATGTATTACCCA
TAAGCACGAGGCATTATTATCCATGTCATGAACTACTTACAAGCTAACAT
TGATCTTAGCTAATTGTTAATAATTCAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGATTGATGTTCTACAAAATATATTTTCACAAGTATCAGA
ACAACCTACAAAGCATTGACTATTCAAATCCCAAAGTTTACTTAATCACA
CGATTTTTCGCTGCAACATTAGGATAGTCATTTTCTAGCACCATAAGGTA
TTCAAAATCTAACAAAATGAACCTTTTCATCATACTTCAGGACATGCCAT
GACGATAGATAATACCAACTAATCAACTCTTTCAGACGGATAGAAGTCAA
AATTATCTAAAAAGTGAACAAGTCAAATTCTTTATCCTGAAGAGAAAGAA
ATAATACAGTTTACAACATCTAAAGGCAGCACAAGCAAAGAAGGCATGAA
CCCTGAACTCTGAGCTATGGAAATGAAAAAACTATAACAAATTACTAGTA
GACTGATAAGGTCTTGCAGCAAATTAAATCTGCTAAGTTATACCAACCTT
CATGTCCACAACATATACTGCATAAAGAAAACATACCTAGATGTGGACTC
TCAATTCTTTCTTTATTAAATTCATAATAGAATATGAACCAGGGGAAGTA
CAATGAAGGCCGAAGGCATTAGCAAAATAAGCAGTCAAGAACAGTGACAA
TAGGTAAACGGTGGTATCAAGACCAATTCATATAAATGAAGCACGACCAC
TGCACATGGAACAGTCCTAGTAAGCATTCCTAATCATGTGATATTGTAAT
GGTCCTCAGACGTCTTATTTCTGTTGTTTTTTCCTTTTTATTGAAGTCTT
CTTAGCCTGCATATTTAGCTCTTGAGATACTTTTGGTTGGTCAGTTTGTG
GTTCTTCAGGTAAAGTGCAATGCAAAAACTTCTTGCTTGAACCAACTTGG
TTACAGAACAGCTTCAGCATCTTCCTCCCCCTCATCCATTTAAGCATTAT
CTTCATGTGTGTTTTGCTGTTCAATCCACTGATATTAGACTCCTGTTATG
GAACAAAAGAATAAATAAAATGATATACTAGTTCTATAAACCAACAAGGA
TCATATTTTTTTTTCTACATATAAAAAGTTAAACAACGAGATTTTGGGGA
AAAAATTGCATATGACAGAGTTTTAAAGTCTTCAAAGGTTTTAGCGACAC
AATGAATAAAAGAAACTCCTATAATTCAGTAAATATAATGAAAGCAACCA
AGTCTTAATCTCAGATTAGTTGAGTTCAGCTGCACGGATCCTTTTTTACC
ACTCAGCTCTGAAGTACACTAGGTCCACATCAATGTCATTAGAACCATAA
GACTCGAAATAGAACCACTAGCCTAATTATACAAATATAATGTGTGAATC
ATAAGTAGCCAAGAATCAGACAAAAATCACATAATATCGATGGTGAATTA
TGAGAATCATTCAGAATCGATTGACAAAGAAAAGGGAAGCAAAAGGCCAA
ACTCAAAAAAAAAATGAAGGGGAAATGACAGAAACCCGAGAGAATGAGGG
CAAATTAACAAAAACAGGGGGGGCAAATACCCCAAGGTAGTTTTAGTTAT
TTTTGTTTTAAAATTATAACTTTGCTAGTTCGATACTTTGAGCTTGGCCA
CAATAAAGACATTAGGTTCACTTTGATTTTATATTTAGTACATGAATTGA
AATTAAAATTTATATATACACATTATTTACAATTGAATTTTAGTATCTTT
TGATAAAATTAATAGAAAATATATCTACAAAATGTGTATATATATTATTT
TTAATTGATTTTTTCAAAAGTTATACAGAACTTTACCATTTGATTTCAAT
TCTCAATTCTCGATTCAAAAAATAAGGATTTTGATTCTCGATTCAATTCT
CGATTTGATAACTATGGTCCACATCAAAATCCAACACTAATAAATCATTT
AATACCACTTTCCTCTATATCATTTTAGATCTCACTGCTTCCCCACTACA
ACAAATATTAAAAAATATTGGAATCCAAAATGCAAGTGCTGAAAGTTGAG
TACAGATGAATGGTTAAAAATTTACATGCCAAACAATAACAGTTGAATTG
TTAAGAATTGCAAAGAAAAAAAAGCTTATGAGAAACTTATTAAGCAAACA
AACAATAGCAGTAATGAACTTAGCCTGGAGGCACTCTGGGAAATTCAACT
AAACACAAAGAACTACATTATCAATTTTTATCAAGCCAAGAAACATGGAA
ATGTGAGAAATCACAAACACATTCTAGTCAATAGATTGCAGCATAAACAT
TTACAAATTAAGTGGGAAAGAATAGAGAACCTTGGCGTAATTCCAGGTGC
T
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mRNA from alignment at Chromosome01:145363..147863-

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G000800.1.v6.1 ID=Manes.01G000800.1.v6.1|Name=Manes.01G000800.1|organism=Manihot esculenta|type=mRNA|length=2501bp|location=Sequence derived from alignment at Chromosome01:145363..147863- (Manihot esculenta)
AGCACCTGGAATTACGCCAAGGTTCTCTATTCTTTCCCACTTAATTTGTA AATGTTTATGCTGCAATCTATTGACTAGAATGTGTTTGTGATTTCTCACA TTTCCATGTTTCTTGGCTTGATAAAAATTGATAATGTAGTTCTTTGTGTT TAGTTGAATTTCCCAGAGTGCCTCCAGGCTAAGTTCATTACTGCTATTGT TTGTTTGCTTAATAAGTTTCTCATAAGCTTTTTTTTCTTTGCAATTCTTA ACAATTCAACTGTTATTGTTTGGCATGTAAATTTTTAACCATTCATCTGT ACTCAACTTTCAGCACTTGCATTTTGGATTCCAATATTTTTTAATATTTG TTGTAGTGGGGAAGCAGTGAGATCTAAAATGATATAGAGGAAAGTGGTAT TAAATGATTTATTAGTGTTGGATTTTGATGTGGACCATAGTTATCAAATC GAGAATTGAATCGAGAATCAAAATCCTTATTTTTTGAATCGAGAATTGAG AATTGAAATCAAATGGTAAAGTTCTGTATAACTTTTGAAAAAATCAATTA AAAATAATATATATACACATTTTGTAGATATATTTTCTATTAATTTTATC AAAAGATACTAAAATTCAATTGTAAATAATGTGTATATATAAATTTTAAT TTCAATTCATGTACTAAATATAAAATCAAAGTGAACCTAATGTCTTTATT GTGGCCAAGCTCAAAGTATCGAACTAGCAAAGTTATAATTTTAAAACAAA AATAACTAAAACTACCTTGGGGTATTTGCCCCCCCTGTTTTTGTTAATTT GCCCTCATTCTCTCGGGTTTCTGTCATTTCCCCTTCATTTTTTTTTTGAG TTTGGCCTTTTGCTTCCCTTTTCTTTGTCAATCGATTCTGAATGATTCTC ATAATTCACCATCGATATTATGTGATTTTTGTCTGATTCTTGGCTACTTA TGATTCACACATTATATTTGTATAATTAGGCTAGTGGTTCTATTTCGAGT CTTATGGTTCTAATGACATTGATGTGGACCTAGTGTACTTCAGAGCTGAG TGGTAAAAAAGGATCCGTGCAGCTGAACTCAACTAATCTGAGATTAAGAC TTGGTTGCTTTCATTATATTTACTGAATTATAGGAGTTTCTTTTATTCAT TGTGTCGCTAAAACCTTTGAAGACTTTAAAACTCTGTCATATGCAATTTT TTCCCCAAAATCTCGTTGTTTAACTTTTTATATGTAGAAAAAAAAATATG ATCCTTGTTGGTTTATAGAACTAGTATATCATTTTATTTATTCTTTTGTT CCATAACAGGAGTCTAATATCAGTGGATTGAACAGCAAAACACACATGAA GATAATGCTTAAATGGATGAGGGGGAGGAAGATGCTGAAGCTGTTCTGTA ACCAAGTTGGTTCAAGCAAGAAGTTTTTGCATTGCACTTTACCTGAAGAA CCACAAACTGACCAACCAAAAGTATCTCAAGAGCTAAATATGCAGGCTAA GAAGACTTCAATAAAAAGGAAAAAACAACAGAAATAAGACGTCTGAGGAC CATTACAATATCACATGATTAGGAATGCTTACTAGGACTGTTCCATGTGC AGTGGTCGTGCTTCATTTATATGAATTGGTCTTGATACCACCGTTTACCT ATTGTCACTGTTCTTGACTGCTTATTTTGCTAATGCCTTCGGCCTTCATT GTACTTCCCCTGGTTCATATTCTATTATGAATTTAATAAAGAAAGAATTG AGAGTCCACATCTAGGTATGTTTTCTTTATGCAGTATATGTTGTGGACAT GAAGGTTGGTATAACTTAGCAGATTTAATTTGCTGCAAGACCTTATCAGT CTACTAGTAATTTGTTATAGTTTTTTCATTTCCATAGCTCAGAGTTCAGG GTTCATGCCTTCTTTGCTTGTGCTGCCTTTAGATGTTGTAAACTGTATTA TTTCTTTCTCTTCAGGATAAAGAATTTGACTTGTTCACTTTTTAGATAAT TTTGACTTCTATCCGTCTGAAAGAGTTGATTAGTTGGTATTATCTATCGT CATGGCATGTCCTGAAGTATGATGAAAAGGTTCATTTTGTTAGATTTTGA ATACCTTATGGTGCTAGAAAATGACTATCCTAATGTTGCAGCGAAAAATC GTGTGATTAAGTAAACTTTGGGATTTGAATAGTCAATGCTTTGTAGGTTG TTCTGATACTTGTGAAAATATATTTTGTAGAACATCAATCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTGAATTATTAACAATTAGCTAAGATC AATGTTAGCTTGTAAGTAGTTCATGACATGGATAATAATGCCTCGTGCTT ATGGGTAATACATGAAGGTCCAAACTCTATTGCAGTGGTTCAACACTGGA GTTTTGAGTATTTCTTGACAAAATTTGACATATGCAGGGTGATGGTGGTT CAACACTAGAGTTTTGGTTCATCAGCCCCTGTGGATTTAAGTCAAACGCT G
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Coding sequence (CDS) from alignment at Chromosome01:145363..147863-

>Manes.01G000800.1.v6.1 ID=Manes.01G000800.1.v6.1|Name=Manes.01G000800.1|organism=Manihot esculenta|type=CDS|length=249bp|location=Sequence derived from alignment at Chromosome01:145363..147863- (Manihot esculenta)
AGCACCTGGAATTACGCCAAGGAGTCTAATATCAGTGGATTGAACAGCAA
AACACACATGAAGATAATGCTTAAATGGATGAGGGGGAGGAAGATGCTGA
AGCTGTTCTGTAACCAAGTTGGTTCAAGCAAGAAGTTTTTGCATTGCACT
TTACCTGAAGAACCACAAACTGACCAACCAAAAGTATCTCAAGAGCTAAA
TATGCAGGCTAAGAAGACTTCAATAAAAAGGAAAAAACAACAGAAATAA
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