Manes.01G000700.1.v6.1 (mRNA)

Overview
NameManes.01G000700.1
Unique NameManes.01G000700.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length642
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:144661..145302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32359632
Longest1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G000700Manes.01G000700.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G000700.1Manes.01G000700.1.v6.1-proteinManihot esculentapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G000700.1.v6.1.CDS.2Manes.01G000700.1.v6.1.CDS.2Manihot esculentaCDS
Manes.01G000700.1.v6.1.CDS.1Manes.01G000700.1.v6.1.CDS.1Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G000700.1.v6.1.three_prime_UTR.1Manes.01G000700.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G000700.1.v6.1 ID=Manes.01G000700.1.v6.1|Name=Manes.01G000700.1|organism=Manihot esculenta|type=mRNA|length=642bp
AATATATTAAGATTTAATATACGATGATATTGCATTAATTCAACGTTGAT
AAATAAATTAATTTTTCACCAAAAACAGAATATCTAAAAGAAAAATCTCT
TGCTTTGCCAAAAAAGATTAGCAACTTCATTAACTTTCCTGCAAACCCAT
GAGAACTCCACATGCTCGAAATTAATTTCAATTTTCATTGCCTTGGCAGT
AGCTTCAATTTCCCATTTGCATTCACTTTAATTTTGCTTCAAACCCAAAT
AAACTCCATCAGATAGCTCCCAGACTTCTAGCTAATTGAATAGCATGTAG
CATATAGCCTTTGCTTCACCCGCTAAGAGGGAAGAAGAACAAAATTTACT
TGTTCTATCCACAATTTTGCCAAATAACTCCTTAGTAAGACTGCTGCAGT
TGCCTCCAAATATCCTCTTTCTTAGCCACATCACAATTAAATTTAAGAGA
GGCCAGCTTATTGGATTCAGAAAAGCCAGATTTTGAACAGGATTACACAG
CCTAAACTCAGATAAACGAGATAGAGATGTGATGATGCGTGAAGGATGGG
TTAAGAGAGGAATTCTCAAACACAGCTTTATTTCCTGGTTTTCCAAATAC
TCCTCAAGTCATAGCAATAGAAACCAGATATACCTGGCGCAT
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mRNA from alignment at Chromosome01:144661..145302-

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G000700.1.v6.1 ID=Manes.01G000700.1.v6.1|Name=Manes.01G000700.1|organism=Manihot esculenta|type=mRNA|length=642bp|location=Sequence derived from alignment at Chromosome01:144661..145302- (Manihot esculenta)
ATGCGCCAGGTATATCTGGTTTCTATTGCTATGACTTGAGGAGTATTTGG
AAAACCAGGAAATAAAGCTGTGTTTGAGAATTCCTCTCTTAACCCATCCT
TCACGCATCATCACATCTCTATCTCGTTTATCTGAGTTTAGGCTGTGTAA
TCCTGTTCAAAATCTGGCTTTTCTGAATCCAATAAGCTGGCCTCTCTTAA
ATTTAATTGTGATGTGGCTAAGAAAGAGGATATTTGGAGGCAACTGCAGC
AGTCTTACTAAGGAGTTATTTGGCAAAATTGTGGATAGAACAAGTAAATT
TTGTTCTTCTTCCCTCTTAGCGGGTGAAGCAAAGGCTATATGCTACATGC
TATTCAATTAGCTAGAAGTCTGGGAGCTATCTGATGGAGTTTATTTGGGT
TTGAAGCAAAATTAAAGTGAATGCAAATGGGAAATTGAAGCTACTGCCAA
GGCAATGAAAATTGAAATTAATTTCGAGCATGTGGAGTTCTCATGGGTTT
GCAGGAAAGTTAATGAAGTTGCTAATCTTTTTTGGCAAAGCAAGAGATTT
TTCTTTTAGATATTCTGTTTTTGGTGAAAAATTAATTTATTTATCAACGT
TGAATTAATGCAATATCATCGTATATTAAATCTTAATATATT
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Coding sequence (CDS) from alignment at Chromosome01:144661..145302-

>Manes.01G000700.1.v6.1 ID=Manes.01G000700.1.v6.1|Name=Manes.01G000700.1|organism=Manihot esculenta|type=CDS|length=312bp|location=Sequence derived from alignment at Chromosome01:144661..145302- (Manihot esculenta)
ATGCGCCAGGAAATAAAGCTGTGTTTGAGAATTCCTCTCTTAACCCATCC
TTCACGCATCATCACATCTCTATCTCGTTTATCTGAGTTTAGGCTGTGTA
ATCCTGTTCAAAATCTGGCTTTTCTGAATCCAATAAGCTGGCCTCTCTTA
AATTTAATTGTGATGTGGCTAAGAAAGAGGATATTTGGAGGCAACTGCAG
CAGTCTTACTAAGGAGTTATTTGGCAAAATTGTGGATAGAACAAGTAAAT
TTTGTTCTTCTTCCCTCTTAGCGGGTGAAGCAAAGGCTATATGCTACATG
CTATTCAATTAG
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