Manes.01G000600.1.v6.1 (mRNA)

Overview
NameManes.01G000600.1
Unique NameManes.01G000600.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length1863
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:142765..144627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32359235
Longest1
AncestorIdentifiercassava4.1_022534m.v4.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G000600Manes.01G000600.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G000600.1Manes.01G000600.1.v6.1-proteinManihot esculentapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G000600.1.v6.1.five_prime_UTR.1Manes.01G000600.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G000600.1.v6.1.CDS.1Manes.01G000600.1.v6.1.CDS.1Manihot esculentaCDS
Manes.01G000600.1.v6.1.CDS.2Manes.01G000600.1.v6.1.CDS.2Manihot esculentaCDS
Manes.01G000600.1.v6.1.CDS.3Manes.01G000600.1.v6.1.CDS.3Manihot esculentaCDS
Manes.01G000600.1.v6.1.CDS.4Manes.01G000600.1.v6.1.CDS.4Manihot esculentaCDS
Manes.01G000600.1.v6.1.CDS.5Manes.01G000600.1.v6.1.CDS.5Manihot esculentaCDS
Manes.01G000600.1.v6.1.CDS.6Manes.01G000600.1.v6.1.CDS.6Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G000600.1.v6.1.three_prime_UTR.1Manes.01G000600.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G000600.1.v6.1 ID=Manes.01G000600.1.v6.1|Name=Manes.01G000600.1|organism=Manihot esculenta|type=mRNA|length=1863bp
AACAGTTGATCAAGGGATGTCTGAATTAACCTTTCAAAGACTTGAACAAG
ATCAGTAGTTGTCTTTCAGCGATTACATGGCCATGAAATCCTGCGGTTCA
TACTCGGCAATGATACTCATTCAGTTAGCTTATGGAGGATCAAATATACT
CATAAAAATTGCTCTTGACAAGGGACTAAATCAACTTGCTTTTGTGGTTT
ATCGGCATGTGATTGCAGTGGTTCTCTTAGGCCCCTTTGCTTATGTTCTT
GAAAGGTAAAGAAAATCTTGTAATTGTACAATTTATTATTATGGGAGTTA
ACGTTAATATTAAGATTATATTGCAAAGCAGGAAGCAGAGACCTTCGCTT
TCGGTCTCAGTGATCACCAAGATTTTTGTTCTTTCTTCACTAGGAACTAC
CATCCATCTTAACGTTTACTATGCTGGATTGGCATATACTTCTGCAACAG
TTGCAAGTGCTCTTGCTAATGTCATCCCAAGTTTGACGTTCCTCATGGCT
GTTCTACTAAGGTACTAAATTAATTTGTCATTACGTAAACCACTTCAGCT
TCATTCGCTGTCTGATTAGAGGAAATGTGTTGTCAGAATGGAGAAAGTGA
AGATTTCAACTGCTAGGGGATGGGCTAAGGTATTGGGCACCACCATTTGC
ATAGGTGGATCTCTAATTTTCACCTTCTGGAAAGGAGGATTTCTATATAA
GAGCTTTGAGGAGAGGCCATTGATAAGCATCCATAGCAGCAAAGACCATG
CTGTTGTCAAGGAAAACTGGATAAAAGGTTCTGCTCTTATTCTGATAAGC
CATATTGCATGGAGCGCCTGGCTAATTCTACAGGTAAATAATTTCTGTAC
TTCATATATATTTAAGAGTTGTGAGCATATGAAAATAATGGATGCGTCAT
TATGCTTCAGGCTATGGTTTGCAAAGTCTACCCAGCTCGCCTATCGCTAA
CCACTCTGATATGCTTTTTCGCATCAATTCAGTCATCTTTCCTTGCGTTG
TTTTTTGGAAGAAATCCTAGACTGTGGAAGTTGGAGTGGGATGTGCAGCT
CCTGACCATCATATATTGTGTAAGCCATGCACTGTTATCTGTTGTTGTTT
CTTTAATATTACGCCTAAAGCATATAATTTGATCTCCTTCTCCTTTGTTA
TGCAGGGAGTTGTGATCTCTGCATTAGTGTACTACCTACAGACATGGTGT
ATTAGCAAGAAGGGGCCAGTTTTTGCAGCCATGTTTAGTCCTTTGCTCCT
TATAATTGTAGGAATATTCTCAGCGATTGCTTTTGCAGAGAGGCTTCATT
TGGGGAGGTGAGTAATATCTATATCACCAAATGGGACAATTTAGGAGATA
TAAAGTTACTGTTTCAACTTTTAATAGTAGTAACTCATTATCTCTTGACT
GCGGGTACTGTTTTTGGCATTTCCTAGCTTGGTAGGAGCAGTTTGCATCA
TCTTGGGCCTTTATTGTGCACTGTGGGGCAAACTTGAAGATGATATTACT
GCTCAGCAGGCGGACGAAGCTGGCAAAACCATTGCTGCTGATGGTAAACC
AGATGAAATTAGCACGAATGGTTATCCATTGGCCAATCTTGAGAATGAAA
ATGGTAAGTGCTAGTTCAGCACTGTGATAAAAGGAAACACTGAATTGTAT
TTGAATTAGTGCATGGTGACGCTCATGAGATCAGTGGCAGTAGCTACCTA
GCAAAGCAGTGGATGACAATGGATCCACCATTAACACACCAATGATTAAT
TAATTGCCAAAACACGTAACCTTATCTGCGAATTCTAAGTTTGTAACCAA
ACATTGGAAGGTTCATTATTATGGCCACGAAAGAAAGGGGCAATCACTTT
TTATTCTAATGCC
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mRNA from alignment at Chromosome01:142765..144627+

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G000600.1.v6.1 ID=Manes.01G000600.1.v6.1|Name=Manes.01G000600.1|organism=Manihot esculenta|type=mRNA|length=1863bp|location=Sequence derived from alignment at Chromosome01:142765..144627+ (Manihot esculenta)
AACAGTTGATCAAGGGATGTCTGAATTAACCTTTCAAAGACTTGAACAAG ATCAGTAGTTGTCTTTCAGCGATTACATGGCCATGAAATCCTGCGGTTCA TACTCGGCAATGATACTCATTCAGTTAGCTTATGGAGGATCAAATATACT CATAAAAATTGCTCTTGACAAGGGACTAAATCAACTTGCTTTTGTGGTTT ATCGGCATGTGATTGCAGTGGTTCTCTTAGGCCCCTTTGCTTATGTTCTT GAAAGGTAAAGAAAATCTTGTAATTGTACAATTTATTATTATGGGAGTTA ACGTTAATATTAAGATTATATTGCAAAGCAGGAAGCAGAGACCTTCGCTT TCGGTCTCAGTGATCACCAAGATTTTTGTTCTTTCTTCACTAGGAACTAC CATCCATCTTAACGTTTACTATGCTGGATTGGCATATACTTCTGCAACAG TTGCAAGTGCTCTTGCTAATGTCATCCCAAGTTTGACGTTCCTCATGGCT GTTCTACTAAGGTACTAAATTAATTTGTCATTACGTAAACCACTTCAGCT TCATTCGCTGTCTGATTAGAGGAAATGTGTTGTCAGAATGGAGAAAGTGA AGATTTCAACTGCTAGGGGATGGGCTAAGGTATTGGGCACCACCATTTGC ATAGGTGGATCTCTAATTTTCACCTTCTGGAAAGGAGGATTTCTATATAA GAGCTTTGAGGAGAGGCCATTGATAAGCATCCATAGCAGCAAAGACCATG CTGTTGTCAAGGAAAACTGGATAAAAGGTTCTGCTCTTATTCTGATAAGC CATATTGCATGGAGCGCCTGGCTAATTCTACAGGTAAATAATTTCTGTAC TTCATATATATTTAAGAGTTGTGAGCATATGAAAATAATGGATGCGTCAT TATGCTTCAGGCTATGGTTTGCAAAGTCTACCCAGCTCGCCTATCGCTAA CCACTCTGATATGCTTTTTCGCATCAATTCAGTCATCTTTCCTTGCGTTG TTTTTTGGAAGAAATCCTAGACTGTGGAAGTTGGAGTGGGATGTGCAGCT CCTGACCATCATATATTGTGTAAGCCATGCACTGTTATCTGTTGTTGTTT CTTTAATATTACGCCTAAAGCATATAATTTGATCTCCTTCTCCTTTGTTA TGCAGGGAGTTGTGATCTCTGCATTAGTGTACTACCTACAGACATGGTGT ATTAGCAAGAAGGGGCCAGTTTTTGCAGCCATGTTTAGTCCTTTGCTCCT TATAATTGTAGGAATATTCTCAGCGATTGCTTTTGCAGAGAGGCTTCATT TGGGGAGGTGAGTAATATCTATATCACCAAATGGGACAATTTAGGAGATA TAAAGTTACTGTTTCAACTTTTAATAGTAGTAACTCATTATCTCTTGACT GCGGGTACTGTTTTTGGCATTTCCTAGCTTGGTAGGAGCAGTTTGCATCA TCTTGGGCCTTTATTGTGCACTGTGGGGCAAACTTGAAGATGATATTACT GCTCAGCAGGCGGACGAAGCTGGCAAAACCATTGCTGCTGATGGTAAACC AGATGAAATTAGCACGAATGGTTATCCATTGGCCAATCTTGAGAATGAAA ATGGTAAGTGCTAGTTCAGCACTGTGATAAAAGGAAACACTGAATTGTAT TTGAATTAGTGCATGGTGACGCTCATGAGATCAGTGGCAGTAGCTACCTA GCAAAGCAGTGGATGACAATGGATCCACCATTAACACACCAATGATTAAT TAATTGCCAAAACACGTAACCTTATCTGCGAATTCTAAGTTTGTAACCAA ACATTGGAAGGTTCATTATTATGGCCACGAAAGAAAGGGGCAATCACTTT TTATTCTAATGCC
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Coding sequence (CDS) from alignment at Chromosome01:142765..144627+

>Manes.01G000600.1.v6.1 ID=Manes.01G000600.1.v6.1|Name=Manes.01G000600.1|organism=Manihot esculenta|type=CDS|length=1104bp|location=Sequence derived from alignment at Chromosome01:142765..144627+ (Manihot esculenta)
ATGGCCATGAAATCCTGCGGTTCATACTCGGCAATGATACTCATTCAGTT
AGCTTATGGAGGATCAAATATACTCATAAAAATTGCTCTTGACAAGGGAC
TAAATCAACTTGCTTTTGTGGTTTATCGGCATGTGATTGCAGTGGTTCTC
TTAGGCCCCTTTGCTTATGTTCTTGAAAGGAAGCAGAGACCTTCGCTTTC
GGTCTCAGTGATCACCAAGATTTTTGTTCTTTCTTCACTAGGAACTACCA
TCCATCTTAACGTTTACTATGCTGGATTGGCATATACTTCTGCAACAGTT
GCAAGTGCTCTTGCTAATGTCATCCCAAGTTTGACGTTCCTCATGGCTGT
TCTACTAAGAATGGAGAAAGTGAAGATTTCAACTGCTAGGGGATGGGCTA
AGGTATTGGGCACCACCATTTGCATAGGTGGATCTCTAATTTTCACCTTC
TGGAAAGGAGGATTTCTATATAAGAGCTTTGAGGAGAGGCCATTGATAAG
CATCCATAGCAGCAAAGACCATGCTGTTGTCAAGGAAAACTGGATAAAAG
GTTCTGCTCTTATTCTGATAAGCCATATTGCATGGAGCGCCTGGCTAATT
CTACAGGCTATGGTTTGCAAAGTCTACCCAGCTCGCCTATCGCTAACCAC
TCTGATATGCTTTTTCGCATCAATTCAGTCATCTTTCCTTGCGTTGTTTT
TTGGAAGAAATCCTAGACTGTGGAAGTTGGAGTGGGATGTGCAGCTCCTG
ACCATCATATATTGTGGAGTTGTGATCTCTGCATTAGTGTACTACCTACA
GACATGGTGTATTAGCAAGAAGGGGCCAGTTTTTGCAGCCATGTTTAGTC
CTTTGCTCCTTATAATTGTAGGAATATTCTCAGCGATTGCTTTTGCAGAG
AGGCTTCATTTGGGGAGCTTGGTAGGAGCAGTTTGCATCATCTTGGGCCT
TTATTGTGCACTGTGGGGCAAACTTGAAGATGATATTACTGCTCAGCAGG
CGGACGAAGCTGGCAAAACCATTGCTGCTGATGGTAAACCAGATGAAATT
AGCACGAATGGTTATCCATTGGCCAATCTTGAGAATGAAAATGGTAAGTG
CTAG
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