Manes.01G000500.1.v6.1 (mRNA)

Overview
NameManes.01G000500.1
Unique NameManes.01G000500.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length1556
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:126066..127621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Pacid32360174
Longest1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G000500Manes.01G000500.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G000500.1Manes.01G000500.1.v6.1-proteinManihot esculentapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G000500.1.v6.1.five_prime_UTR.1Manes.01G000500.1.v6.1.five_prime_UTR.1Manihot esculentafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G000500.1.v6.1.CDS.1Manes.01G000500.1.v6.1.CDS.1Manihot esculentaCDS
Manes.01G000500.1.v6.1.CDS.2Manes.01G000500.1.v6.1.CDS.2Manihot esculentaCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G000500.1.v6.1.three_prime_UTR.1Manes.01G000500.1.v6.1.three_prime_UTR.1Manihot esculentathree_prime_UTR


Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G000500.1.v6.1 ID=Manes.01G000500.1.v6.1|Name=Manes.01G000500.1|organism=Manihot esculenta|type=mRNA|length=1556bp
GAAAAAAAGTAATTAAACAGAGACTGGCCCTCTTGTAATATATACATGTA
GAATCATTTTCGCTGCTAAGATCTTGAATACAAGTTTCCTAATATTTAGT
AAAGTAATTTTAAAGCCTCAAGTAAACGCATGCATTGCTTAATTGCAGCC
CAGAAGTGATACCTATAAAATCATCCAATTCTCTACTCGTACGCAATCTC
TTCTCTCTCTCAGACAACAATCTCATCTTAGAAACTTCAAGCTGCTTGAT
GATTTGAAAGCACCGCTTTCCGCATATATATATATATATATATCAAATAA
GAAGCCGGTGATATAGCATAAACCACATCAAAATAATAAAACATCCAGCC
AAATGCGGCCGCAACCAGAAATGACAACGGCCGCTTCTCCACATATCATC
CACCTCTCTCCACCGCTTCCCCACACAACATCGACGGCATGTTCCCCCCA
CGCTCACAGCTGCAGGTGGTGGCCTTACTCAAACTCTAATGATTTTGGAG
CCAACACAGCCATGATCCTCATCATCCTCCTCTGTGCACTAATATGTGCT
CTTGCTCTCAACACAGCTATCCGCTGCTTCTTAAACGGCGGCCATCACCC
ACCAGACCGTCTTCCCCAAAATCGACGAGAAATTGACGAACAGCGAAAAC
CCAACACTGAAGCAGGTGCAGCGCCATTGGTGGTGGCTCCAACGCTGGTG
TATTCGGCAGGGATGAAGCTGGGAGGAGAAGAGGCTGACTGCGCTATTTG
CTTGTCGGAGTTCATGGAGGGTGATGGGATTCGGGTTTTGGGAACTTGCA
AGCATGGGTTCCATGTCCACTGTATCGAACGGTGGTTGTCTTGCCACTTC
TCTTGTCCCACTTGTCGCCGCAGTTGTCTTGCTTCCGTCCCCTCCTCCTC
AGAAACTTCCGAGACACCAAGAAATGACCTAAACAACCCTTCCCAACAAC
CGGAGACCCCGATGGCTACAGGTCAATTCACTAGTACTCCTTAACAATTA
TACGCAATGTAACGTTTGTGAATAAAGTTTTTCCCTTTTTCATTTTCCCT
TTTTCATTTTCTAATATATTAACTTTTGGCTCAAAATTTCCCCTCCCTCT
AGCTAGCCCGGCTGCATCTATGCTTATCTTTTAGCAGTCATTTAAGCATC
CATCCTCTAGAGTTCAACAGATACTTCAGCCAGATGCAGCTCTAGAAGAA
TTTCCATTATGCAAAGGACAAGCTAGGAATTACAAGGTTAAGTAGAAACT
AAACTAGAGAGATGAACTATATTTTTCTAACAGAGAAACTCTAAATTACA
AAATCAAAAGAGATATTGGACCTTTTTGCTGTTCCCAATGAAAAGGTGCC
TAGCGTTGAATTTCTGCTAGAACAGCATATTTTTCTCTCTAACCATCATC
GTTCTTACATAGCTTTGCGTGGCAGTTAAAATGTGTCACAAGAACTTAAC
ACTGAACCTTTGTAAGCCGGAATATATGCCAGATCTGTTCCAACTCTTTA
TCCTTTTTAATGGCAAACTGGAATTTTTAAGCAACTTGCCATTATTTGAG
AAGGCT
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mRNA from alignment at Chromosome01:126066..127621+

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G000500.1.v6.1 ID=Manes.01G000500.1.v6.1|Name=Manes.01G000500.1|organism=Manihot esculenta|type=mRNA|length=1556bp|location=Sequence derived from alignment at Chromosome01:126066..127621+ (Manihot esculenta)
GAAAAAAAGTAATTAAACAGAGACTGGCCCTCTTGTAATATATACATGTA GAATCATTTTCGCTGCTAAGATCTTGAATACAAGTTTCCTAATATTTAGT AAAGTAATTTTAAAGCCTCAAGTAAACGCATGCATTGCTTAATTGCAGCC CAGAAGTGATACCTATAAAATCATCCAATTCTCTACTCGTACGCAATCTC TTCTCTCTCTCAGACAACAATCTCATCTTAGAAACTTCAAGCTGCTTGAT GATTTGAAAGCACCGCTTTCCGCATATATATATATATATATATCAAATAA GAAGCCGGTGATATAGCATAAACCACATCAAAATAATAAAACATCCAGCC AAATGCGGCCGCAACCAGAAATGACAACGGCCGCTTCTCCACATATCATC CACCTCTCTCCACCGCTTCCCCACACAACATCGACGGCATGTTCCCCCCA CGCTCACAGCTGCAGGTGGTGGCCTTACTCAAACTCTAATGATTTTGGAG CCAACACAGCCATGATCCTCATCATCCTCCTCTGTGCACTAATATGTGCT CTTGCTCTCAACACAGCTATCCGCTGCTTCTTAAACGGCGGCCATCACCC ACCAGACCGTCTTCCCCAAAATCGACGAGAAATTGACGAACAGCGAAAAC CCAACACTGAAGCAGGTGCAGCGCCATTGGTGGTGGCTCCAACGCTGGTG TATTCGGCAGGGATGAAGCTGGGAGGAGAAGAGGCTGACTGCGCTATTTG CTTGTCGGAGTTCATGGAGGGTGATGGGATTCGGGTTTTGGGAACTTGCA AGCATGGGTTCCATGTCCACTGTATCGAACGGTGGTTGTCTTGCCACTTC TCTTGTCCCACTTGTCGCCGCAGTTGTCTTGCTTCCGTCCCCTCCTCCTC AGAAACTTCCGAGACACCAAGAAATGACCTAAACAACCCTTCCCAACAAC CGGAGACCCCGATGGCTACAGGTCAATTCACTAGTACTCCTTAACAATTA TACGCAATGTAACGTTTGTGAATAAAGTTTTTCCCTTTTTCATTTTCCCT TTTTCATTTTCTAATATATTAACTTTTGGCTCAAAATTTCCCCTCCCTCT AGCTAGCCCGGCTGCATCTATGCTTATCTTTTAGCAGTCATTTAAGCATC CATCCTCTAGAGTTCAACAGATACTTCAGCCAGATGCAGCTCTAGAAGAA TTTCCATTATGCAAAGGACAAGCTAGGAATTACAAGGTTAAGTAGAAACT AAACTAGAGAGATGAACTATATTTTTCTAACAGAGAAACTCTAAATTACA AAATCAAAAGAGATATTGGACCTTTTTGCTGTTCCCAATGAAAAGGTGCC TAGCGTTGAATTTCTGCTAGAACAGCATATTTTTCTCTCTAACCATCATC GTTCTTACATAGCTTTGCGTGGCAGTTAAAATGTGTCACAAGAACTTAAC ACTGAACCTTTGTAAGCCGGAATATATGCCAGATCTGTTCCAACTCTTTA TCCTTTTTAATGGCAAACTGGAATTTTTAAGCAACTTGCCATTATTTGAG AAGGCT
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Coding sequence (CDS) from alignment at Chromosome01:126066..127621+

>Manes.01G000500.1.v6.1 ID=Manes.01G000500.1.v6.1|Name=Manes.01G000500.1|organism=Manihot esculenta|type=CDS|length=651bp|location=Sequence derived from alignment at Chromosome01:126066..127621+ (Manihot esculenta)
ATGCGGCCGCAACCAGAAATGACAACGGCCGCTTCTCCACATATCATCCA
CCTCTCTCCACCGCTTCCCCACACAACATCGACGGCATGTTCCCCCCACG
CTCACAGCTGCAGGTGGTGGCCTTACTCAAACTCTAATGATTTTGGAGCC
AACACAGCCATGATCCTCATCATCCTCCTCTGTGCACTAATATGTGCTCT
TGCTCTCAACACAGCTATCCGCTGCTTCTTAAACGGCGGCCATCACCCAC
CAGACCGTCTTCCCCAAAATCGACGAGAAATTGACGAACAGCGAAAACCC
AACACTGAAGCAGGTGCAGCGCCATTGGTGGTGGCTCCAACGCTGGTGTA
TTCGGCAGGGATGAAGCTGGGAGGAGAAGAGGCTGACTGCGCTATTTGCT
TGTCGGAGTTCATGGAGGGTGATGGGATTCGGGTTTTGGGAACTTGCAAG
CATGGGTTCCATGTCCACTGTATCGAACGGTGGTTGTCTTGCCACTTCTC
TTGTCCCACTTGTCGCCGCAGTTGTCTTGCTTCCGTCCCCTCCTCCTCAG
AAACTTCCGAGACACCAAGAAATGACCTAAACAACCCTTCCCAACAACCG
GAGACCCCGATGGCTACAGCTAGCCCGGCTGCATCTATGCTTATCTTTTA
G
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