Manes.01G000200.1.v6.1 (mRNA)

Overview
NameManes.01G000200.1
Unique NameManes.01G000200.1.v6.1
TypemRNA
OrganismManihot esculenta (Cassava)
Sequence length624
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chromosome01chromosomeChromosome01:11575..12198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Manihot esculenta (JGI)2015-07-22
Properties
Property NameValue
Longest1
Pacid32358069
Sequences
The following sequences are available for this feature:

mRNA sequence

>Manes.01G000200.1.v6.1 ID=Manes.01G000200.1.v6.1|Name=Manes.01G000200.1|organism=Manihot esculenta|type=mRNA|length=624bp
ATGGGGGAAGACAAATATTACAACTCTTCTAACATATTGCTCGGAAGGCC
CTTCCTTAGCATGACAAGAGCAAAAATCAATGTGTATGATGGCATGCTTT
CTATGAAGTTTGATGGTGAGGTTGTAAAATTTAATATTTATGAATCTATG
AAATACCCCACAGATGTGTCCTCTGTTTATGAGATAGATGTTATTGATCT
TTTAGTTGAGGAAATGCTTGATTTAACTTACGATAGACTAACAGATTTTT
CGAGTACCACACTCACAGAGTGCGCAGCGCTCAATGCTCTGACCGATTCC
ATGTCTCGCAATGACCGGTCATCTCTAATTGCTCTACCTGACTCTAATAC
CAAACTTCTTCCTTTTATTGCGCAGGCACCCAAGCTAGAAGTGAAGGAAT
TGCCCGGCCACTTTAAATATGCATATTTAGGTGAACATGAGACTCTTCCG
GTCATAATATCTAGCAAGTTAACTCCCAAAGAAGAAGAAAGATTGATCGA
GGTGTTAAAAGAGTACAAGTCAGCAATCGGTTGGACAATCACTGATATTA
AGGGGTTGAGCCCATCAACATGCCTGCATTGTATACTTTTGGAAGAAGAC
AGTAAGCCAACTCGAGAACCATAG
back to top

mRNA from alignment at Chromosome01:11575..12198+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Manes.01G000200.1.v6.1 ID=Manes.01G000200.1.v6.1|Name=Manes.01G000200.1|organism=Manihot esculenta|type=mRNA|length=624bp|location=Sequence derived from alignment at Chromosome01:11575..12198+ (Manihot esculenta)
ATGGGGGAAGACAAATATTACAACTCTTCTAACATATTGCTCGGAAGGCC CTTCCTTAGCATGACAAGAGCAAAAATCAATGTGTATGATGGCATGCTTT CTATGAAGTTTGATGGTGAGGTTGTAAAATTTAATATTTATGAATCTATG AAATACCCCACAGATGTGTCCTCTGTTTATGAGATAGATGTTATTGATCT TTTAGTTGAGGAAATGCTTGATTTAACTTACGATAGACTAACAGATTTTT CGAGTACCACACTCACAGAGTGCGCAGCGCTCAATGCTCTGACCGATTCC ATGTCTCGCAATGACCGGTCATCTCTAATTGCTCTACCTGACTCTAATAC CAAACTTCTTCCTTTTATTGCGCAGGCACCCAAGCTAGAAGTGAAGGAAT TGCCCGGCCACTTTAAATATGCATATTTAGGTGAACATGAGACTCTTCCG GTCATAATATCTAGCAAGTTAACTCCCAAAGAAGAAGAAAGATTGATCGA GGTGTTAAAAGAGTACAAGTCAGCAATCGGTTGGACAATCACTGATATTA AGGGGTTGAGCCCATCAACATGCCTGCATTGTATACTTTTGGAAGAAGAC AGTAAGCCAACTCGAGAACCATAG
back to top

Coding sequence (CDS) from alignment at Chromosome01:11575..12198+

>Manes.01G000200.1.v6.1 ID=Manes.01G000200.1.v6.1|Name=Manes.01G000200.1|organism=Manihot esculenta|type=CDS|length=369bp|location=Sequence derived from alignment at Chromosome01:11575..12198+ (Manihot esculenta)
ATGGGGGAAGACAAATATTACAACTCTTCTAACATATTGCTCGGAAGGCC
CTTCCTTAGCATGACAAGAGCAAAAATCAATGTGTATGATGGCATGCTTT
CTATGAAGTTTGATGGTGAGGCACCCAAGCTAGAAGTGAAGGAATTGCCC
GGCCACTTTAAATATGCATATTTAGGTGAACATGAGACTCTTCCGGTCAT
AATATCTAGCAAGTTAACTCCCAAAGAAGAAGAAAGATTGATCGAGGTGT
TAAAAGAGTACAAGTCAGCAATCGGTTGGACAATCACTGATATTAAGGGG
TTGAGCCCATCAACATGCCTGCATTGTATACTTTTGGAAGAAGACAGTAA
GCCAACTCGAGAACCATAG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Manes.01G000200Manes.01G000200.v6.1Manihot esculentagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G000200.1Manes.01G000200.1.v6.1-proteinManihot esculentapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Manes.01G000200.1.v6.1.CDS.1Manes.01G000200.1.v6.1.CDS.1Manihot esculentaCDS
Manes.01G000200.1.v6.1.CDS.2Manes.01G000200.1.v6.1.CDS.2Manihot esculentaCDS